Pregenerated sensors for MPHOSPH6-DT (Homo sapiens)

Ensembl gene IDs: ENSG00000261029

Ensembl transcript IDs: ENST00000563841.1

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	CGCTTTAAATCCAGATTATGCTGCCTTCCACATCTTCCATCTCTATaGCAGTACTTAGGATCCATATCGTTGTCTTGGGCATACCCATGG	+
Preference number: 5 (lower is better) Translates to: RFKSRLCCLPHLPSL*QYLGSISLSWAYPW Trigger: CCATGGGTATGCCCAAGACAACGATATGGATCCTAAGTACTGTCATAGAGATGGAAGATGTGGAAGGCAGCATAATCTGGATTTAAAGCG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000563841.1
CDS CAA 90 bp	ACATCTTCCATCTCTATGACAGTACTTAGGATCCATATCGTTGTCTaGGGCATACCCATGGCGGGGGTGGTTTCCCTAGTACCCGAGCCT	+
Preference number: 6 (lower is better) Translates to: TSSISMTVLRIHIVV*GIPMAGVVSLVPEP Trigger: AGGCTCGGGTACTAGGGAAACCACCCCCGCCATGGGTATGCCCAAGACAACGATATGGATCCTAAGTACTGTCATAGAGATGGAAGATGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000563841.1
CDS CAA 72 bp	ATCTCTATGACAGTACTTAGGATCCATATCGTTGTCTaGGGCATACCCATGGCGGGGGTGGTTTCCCTAGTA	+
Preference number: 6 (lower is better) Translates to: ISMTVLRIHIVV*GIPMAGVVSLV Trigger: TACTAGGGAAACCACCCCCGCCATGGGTATGCCCAAGACAACGATATGGATCCTAAGTACTGTCATAGAGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000563841.1
CDS TCA 72 bp	TCCAGATTATGCTGCCTTCCACATCTTCCATCTCTATaGCAGTACTTAGGATCCATATCGTTGTCTTGGGCA	+
Preference number: 6 (lower is better) Translates to: SRLCCLPHLPSL*QYLGSISLSWA Trigger: TGCCCAAGACAACGATATGGATCCTAAGTACTGTCATAGAGATGGAAGATGTGGAAGGCAGCATAATCTGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000563841.1
CDS CAA 72 bp	CAATTTAATACATGGCCTTTAAGATCTGGCCGTAACTaGCCTCCCCAGACTTGTCACCTATACAACAAGCAT	+
Preference number: 6 (lower is better) Translates to: QFNTWPLRSGRN*PPQTCHLYNKH Trigger: ATGCTTGTTGTATAGGTGACAAGTCTGGGGAGGCAAGTTACGGCCAGATCTTAAAGGCCATGTATTAAATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000563841.1
CDS CAA 90 bp	AAATCCTACCAATTTAATACATGGCCTTTAAGATCTGGCCGTAACTaGCCTCCCCAGACTTGTCACCTATACAACAAGCATCACTTTAAC	+
Preference number: 6 (lower is better) Translates to: KSYQFNTWPLRSGRN*PPQTCHLYNKHHFN Trigger: GTTAAAGTGATGCTTGTTGTATAGGTGACAAGTCTGGGGAGGCAAGTTACGGCCAGATCTTAAAGGCCATGTATTAAATTGGTAGGATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000563841.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu