Pregenerated sensors for MNDA (Homo sapiens)
Ensembl gene IDs: ENSG00000163563Ensembl transcript IDs: ENST00000368141.5, ENST00000438394.1, ENST00000491210.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGCTACAGGAATCCTCCCTCTTGCTTCCGATGTCAGTTTGTTTCTTaGGGTGGGTGCAGGTGCCGCAAGACCCACTTCTTCCTGGTTTAT | + |
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Preference number: 5 (lower is better) Translates to: SYRNPPSCFRCQFVS*GGCRCRKTHFFLVY Trigger: ATAAACCAGGAAGAAGTGGGTCTTGCGGCACCTGCACCCACCGCAAGAAACAAACTGACATCGGAAGCAAGAGGGAGGATTCCTGTAGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368141.5 |
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| CDS TCA 90 bp | TTGCCAACTGGTCAGTCTCTGAGGTGCCAACATCCCCATGACTGCTaGGTTATAAATTGGAAAAGGGATGTACCAGCTATGACCAAGGTG | + |
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Preference number: 5 (lower is better) Translates to: LPTGQSLRCQHPHDC*VINWKRDVPAMTKV Trigger: CACCTTGGTCATAGCTGGTACATCCCTTTTCCAATTTATAACTCAGCAGTCATGGGGATGTTGGCACCTCAGAGACTGACCAGTTGGCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000491210.1 |
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| CDS CAA 72 bp | GCTACAGGAATCCTCCCTCTTGCTTCCGATGTCAGTTaGTTTCTTGCGGTGGGTGCAGGTGCCGCAAGACCC | + |
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Preference number: 6 (lower is better) Translates to: ATGILPLASDVS*FLAVGAGAARP Trigger: GGGTCTTGCGGCACCTGCACCCACCGCAAGAAACAAACTGACATCGGAAGCAAGAGGGAGGATTCCTGTAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368141.5 |
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| CDS CAA 72 bp | GAATCCTCCCTCTTGCTTCCGATGTCAGTTTGTTTCTaGCGGTGGGTGCAGGTGCCGCAAGACCCACTTCTT | + |
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Preference number: 6 (lower is better) Translates to: ESSLLLPMSVCF*RWVQVPQDPLL Trigger: AAGAAGTGGGTCTTGCGGCACCTGCACCCACCGCAAGAAACAAACTGACATCGGAAGCAAGAGGGAGGATTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368141.5 |
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| CDS CAA 90 bp | GAGCTACAGGAATCCTCCCTCTTGCTTCCGATGTCAGTTTGTTTCTaGCGGTGGGTGCAGGTGCCGCAAGACCCACTTCTTCCTGGTTTA | + |
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Preference number: 6 (lower is better) Translates to: ELQESSLLLPMSVCF*RWVQVPQDPLLPGL Trigger: TAAACCAGGAAGAAGTGGGTCTTGCGGCACCTGCACCCACCGCAAGAAACAAACTGACATCGGAAGCAAGAGGGAGGATTCCTGTAGCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368141.5 |
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| CDS CAA 90 bp | CACTGGGTCGTTTTGGGGAACATTTCTTCTTGCATCCACCTGCCGTaGGGCCTGGGTTTCCTGATTCGGAGTAAACGAAGTGTTGGATGG | + |
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Preference number: 6 (lower is better) Translates to: HWVVLGNISSCIHLP*GLGFLIRSKRSVGW Trigger: CCATCCAACACTTCGTTTACTCCGAATCAGGAAACCCAGGCCCAACGGCAGGTGGATGCAAGAAGAAATGTTCCCCAAAACGACCCAGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368141.5 |
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| CDS CAA 72 bp | GTTTTGGGGAACATTTCTTCTTGCATCCACCTGCCGTaGGGCCTGGGTTTCCTGATTCGGAGTAAACGAAGT | + |
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Preference number: 6 (lower is better) Translates to: VLGNISSCIHLP*GLGFLIRSKRS Trigger: ACTTCGTTTACTCCGAATCAGGAAACCCAGGCCCAACGGCAGGTGGATGCAAGAAGAAATGTTCCCCAAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368141.5 |
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| CDS TCA 72 bp | GCCAACTGGTCAGTCTCTGAGGTGCCAACATCCCCATaGCTGCTGAGTTATAAATTGGAAAAGGGATGTACC | + |
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Preference number: 6 (lower is better) Translates to: ANWSVSEVPTSP*LLSYKLEKGCT Trigger: GGTACATCCCTTTTCCAATTTATAACTCAGCAGTCATGGGGATGTTGGCACCTCAGAGACTGACCAGTTGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000491210.1 |
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| CDS TCA 72 bp | GGTCAGTCTCTGAGGTGCCAACATCCCCATGACTGCTaGGTTATAAATTGGAAAAGGGATGTACCAGCTATG | + |
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Preference number: 6 (lower is better) Translates to: GQSLRCQHPHDC*VINWKRDVPAM Trigger: CATAGCTGGTACATCCCTTTTCCAATTTATAACTCAGCAGTCATGGGGATGTTGGCACCTCAGAGACTGACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000491210.1 |
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| CDS CAA 72 bp | TCCACAATAGTCTTCAGAAATCCTGGAGTCACTGTCTaGTTTAGGACAGAATCACTGTCCGTAAAGCTTTGG | + |
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Preference number: 6 (lower is better) Translates to: STIVFRNPGVTV*FRTESLSVKLW Trigger: CCAAAGCTTTACGGACAGTGATTCTGTCCTAAACAAGACAGTGACTCCAGGATTTCTGAAGACTATTGTGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000368141.5 ENST00000491210.1 |
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| CDS CAA 72 bp | CCCATACACCATTGTTCCAGATGCTTGCTTGTAAAGTaGACTGATCTTGGGAGTTTTATTTGCTATTTCGAT | + |
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Preference number: 6 (lower is better) Translates to: PIHHCSRCLLVK*TDLGSFICYFD Trigger: ATCGAAATAGCAAATAAAACTCCCAAGATCAGTCAACTTTACAAGCAAGCATCTGGAACAATGGTGTATGGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000368141.5 ENST00000438394.1 |
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