RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MMACHC (Homo sapiens)

Ensembl gene IDs: ENSG00000132763

Ensembl transcript IDs: ENST00000401061.9, ENST00000616135.1

Found 284 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTGTTACATTTTGTTTCACTACACATGAGGGAGAAGAATAAGCCCTaGTATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGG +
Preference number: 1 (lower is better)
Translates to: VLHFVSLHMREKNKP*YSVGQSTATDATGW
Trigger: CCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAGTGAAACAAAATGTAACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
3UTR CCA 90 bp ACAAGGCTGGTGGCCTTGGGTAGGGCTTTCGTAGTTGCACAGTACTaGGCAATTCTTAGCCTTCCCTTGGTTCTAGCCTTGATTAGAGAT +
Preference number: 1 (lower is better)
Translates to: TRLVALGRAFVVAQY*AILSLPLVLALIRD
Trigger: ATCTCTAATCAAGGCTAGAACCAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAACTACGAAAGCCCTACCCAAGGCCACCAGCCTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
3UTR TCA 90 bp GAGGCCAAGGTAGATTCAGAACTGAGGATACTTCTGTGTATCATGTaGTACCATTCCAGCCACTTGTCTTCCTCAGCTACTCCCACCTGC +
Preference number: 1 (lower is better)
Translates to: EAKVDSELRILLCIM*YHSSHLSSSATPTC
Trigger: GCAGGTGGGAGTAGCTGAGGAAGACAAGTGGCTGGAATGGTATCACATGATACACAGAAGTATCCTCAGTTCTGAATCTACCTTGGCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR CCA 90 bp CTTGGACACCTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATaGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTG +
Preference number: 1 (lower is better)
Translates to: LGHLFLFRHTIQRAA*EPEAWPLLINAWYL
Trigger: CAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAGGTGTCCAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
3UTR CCA 90 bp TTGTTTAGACACACTATTCAAAGGGCTGCATGGGAACCAGAAGCTTaGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAAAGAGCT +
Preference number: 1 (lower is better)
Translates to: LFRHTIQRAAWEPEA*PLLINAWYLLCKRA
Trigger: AGCTCTTTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
3UTR GCA 90 bp GAGTGTTCAGGTGCAGAACTGGTTTTGTCCATAGGAGAATGGTGGTaGATACCATTGAGAAGGTTATTAATTAGTGGTGCCTTTCTCTTG +
Preference number: 1 (lower is better)
Translates to: ECSGAELVLSIGEWW*IPLRRLLISGAFLL
Trigger: CAAGAGAAAGGCACCACTAATTAATAACCTTCTCAATGGTATGCACCACCATTCTCCTATGGACAAAACCAGTTCTGCACCTGAACACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR CCA 90 bp TCTGAGTGTTCAGGTGCAGAACTGGTTTTGTCCATAGGAGAATGGTaGTGCATACCATTGAGAAGGTTATTAATTAGTGGTGCCTTTCTC +
Preference number: 1 (lower is better)
Translates to: SECSGAELVLSIGEW*CIPLRRLLISGAFL
Trigger: GAGAAAGGCACCACTAATTAATAACCTTCTCAATGGTATGCACCACCATTCTCCTATGGACAAAACCAGTTCTGCACCTGAACACTCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR CCA 90 bp GTATCTGAGTGTTCAGGTGCAGAACTGGTTTTGTCCATAGGAGAATaGTGGTGCATACCATTGAGAAGGTTATTAATTAGTGGTGCCTTT +
Preference number: 1 (lower is better)
Translates to: VSECSGAELVLSIGE*WCIPLRRLLISGAF
Trigger: AAAGGCACCACTAATTAATAACCTTCTCAATGGTATGCACCACCATTCTCCTATGGACAAAACCAGTTCTGCACCTGAACACTCAGATAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR CCA 90 bp TTAAAGGAAATGAAGTTATTAGAGTCTGGATTAGTGGTGTATGTTTaGGAAGACCCAAAGGTGCTAGCTTGGCTAGCACCAAGTAATCTT +
Preference number: 1 (lower is better)
Translates to: LKEMKLLESGLVVYV*EDPKVLAWLAPSNL
Trigger: AAGATTACTTGGTGCTAGCCAAGCTAGCACCTTTGGGTCTTCCCAAACATACACCACTAATCCAGACTCTAATAACTTCATTTCCTTTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR TCA 90 bp CAGGGAATTATATTGACACAGGTAGATATAGGGAATGGAACTGAATaGACCCAAGGTGTTACATTTTGTTTCACTACACATGAGGGAGAA +
Preference number: 1 (lower is better)
Translates to: QGIILTQVDIGNGTE*TQGVTFCFTTHEGE
Trigger: TTCTCCCTCATGTGTAGTGAAACAAAATGTAACACCTTGGGTTCATTCAGTTCCATTCCCTATATCTACCTGTGTCAATATAATTCCCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
3UTR TCA 90 bp TTTAGAATCAGTCACTCCCAAAGATCTAACTTACTGAATGTAGGATaGTCTCACAGATGTATTAGGGCAAAACAAAATGGTTGGGAATCA +
Preference number: 1 (lower is better)
Translates to: FRISHSQRSNLLNVG*SHRCIRAKQNGWES
Trigger: TGATTCCCAACCATTTTGTTTTGCCCTAATACATCTGTGAGATCATCCTACATTCAGTAAGTTAGATCTTTGGGAGTGACTGATTCTAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR-3UTR TCA 90 bp GCCCACCCCTCTAGAACCGACTACACCCATGAGCAGCAGTACAGAATTCCCAGGCCTCCCTGGTTCAAATaGTTCTACTGCCTCAGCCTC +
Preference number: 2 (lower is better)
Translates to: AHPSRTDYTHEQQYRIPRPPWFK*FYCLSL
Trigger: GAGGCTGAGGCAGTAGAATCATTTGAACCAGGGAGG...CCTGGGAATTCTGTACTGCTGCTCATGGGTGTAGTCGGTTCTAGAGGGGTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR-3UTR GCA 90 bp ATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTTAAAGCTGAGGCAGATAATTaGTTGAACCCAGGAGGCAGA +
Preference number: 2 (lower is better)
Translates to: IVLARALRLTPQAGLPVKAEADN*LNPGGR
Trigger: TCTGCCTCCTGGGTTCAAGCAATTATCTGCCTCAGC...TTTAACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR-3UTR CCA 90 bp ATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTTAAAGGCAGATGGGAATTCTaGTTCCCTGGCCTTTATCTT +
Preference number: 2 (lower is better)
Translates to: IVLARALRLTPQAGLPVKGRWEF*FPGLYL
Trigger: AAGATAAAGGCCAGGGAACCAGAATTCCCATCTGCC...TTTAACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR-3UTR TCA 90 bp CCATCCCACTGGAACATGTACAGCCTCTTAAATAGGTACCATTTAAGAGCCAATGGCAGGAGAATGGCATaGACCCCGGAGGTGGAGCTT +
Preference number: 2 (lower is better)
Translates to: PSHWNMYSLLNRYHLRANGRRMA*TPEVEL
Trigger: AAGCTCCACCTCCGGGGTTCATGCCATTCTCCTGCC...ATTGGCTCTTAAATGGTACCTATTTAAGAGGCTGTACATGTTCCAGTGGGATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR CAA 90 bp GTACTCTTTAGAGGATATTTGCCCCTTAGGCCCTGTAACAACATCTaGGGGAACTGCTTAGAAATGGGAACAGATAGAGTCTTGGCTGGG +
Preference number: 2 (lower is better)
Translates to: VLFRGYLPLRPCNNI*GNCLEMGTDRVLAG
Trigger: CCCAGCCAAGACTCTATCTGTTCCCATTTCTAAGCAGTTCCCCAAGATGTTGTTACAGGGCCTAAGGGGCAAATATCCTCTAAAGAGTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR-3UTR CCA 90 bp TGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAATCATTTGAAGGCAGATaGGAATTCTGGTTCCCTGGC +
Preference number: 2 (lower is better)
Translates to: WEPEAWPLLINAWYLLCKSFEGR*EFWFPG
Trigger: GCCAGGGAACCAGAATTCCCATCTGCCTTCAAATGA...TTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR CAA 90 bp GAACCGACTACACCCATGAGCAGCAGTACAGAATTCCCAGGGCCTTaGGTAATGGCCAACATACTGCTTACTATATATGCCAGGTATTTT +
Preference number: 2 (lower is better)
Translates to: EPTTPMSSSTEFPGP*VMANILLTIYARYF
Trigger: AAAATACCTGGCATATATAGTAAGCAGTATGTTGGCCATTACCAAAGGCCCTGGGAATTCTGTACTGCTGCTCATGGGTGTAGTCGGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR-3UTR TCA 90 bp AAGTTCTTGATCCTTTATAAGGTTCAGGCTATCCAGTTTGGTAGAGTTAGAAGATGCCCAGAGTGGTTCTaGATTCCTTGCCTCAGGCGG +
Preference number: 2 (lower is better)
Translates to: KFLILYKVQAIQFGRVRRCPEWF*IPCLRR
Trigger: CCGCCTGAGGCAAGGAATTCAGAACCACTCTGGGCA...TCTTCTAACTCTACCAAACTGGATAGCCTGAACCTTATAAAGGATCAAGAACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR-3UTR CCA 90 bp GAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAAAGACCCTGGCCTTTATCTTaGCCAAACCTAACTTCCTTG +
Preference number: 2 (lower is better)
Translates to: EPEAWPLLINAWYLLCKRPWPLS*PNLTSL
Trigger: CAAGGAAGTTAGGTTTGGCCAAGATAAAGGCCAGGG...TCTTTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR CAA 90 bp AGGGCTTTCGTAGTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTaGGTTCTAGCCTTGATTAGAGATAGTCTTGTTATCTTCATGGAA +
Preference number: 2 (lower is better)
Translates to: RAFVVAQYWAILSLP*VLALIRDSLVIFME
Trigger: TTCCATGAAGATAACAAGACTATCTCTAATCAAGGCTAGAACCAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAACTACGAAAGCCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616135.1
3UTR-3UTR TCA 90 bp GGTTACCAGTTAAAGTCTCAGTGTGACTACTTGGACACCTATTTTTGTTTAGACAGGCAGATAATTGCTTaGACCCAGGAGGCAGAGGTT +
Preference number: 2 (lower is better)
Translates to: GYQLKSQCDYLDTYFCLDRQIIA*TQEAEV
Trigger: AACCTCTGCCTCCTGGGTTCAAGCAATTATCTGCCT...GTCTAAACAAAAATAGGTGTCCAAGTAGTCACACTGAGACTTTAACTGGTAACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR-3UTR TCA 90 bp GACACCTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATGGGAACCAGAAGGGCCAAAGCTCGTTTTaGTCCTCATTCATATGTCAT +
Preference number: 2 (lower is better)
Translates to: DTYFCLDTLFKGLHGNQKGQSSF*SSFICH
Trigger: ATGACATATGAATGAGGATCAAAACGAGCTTTGGCC...CTTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAGGTGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR-3UTR TCA 90 bp CCATCCCACTGGAACATGTACAGCCTCTTAAATAGGTACCATTTAAGAGCCAATTTGTTTCACTACACATaGGGGAGAAGAATAAGCCCT +
Preference number: 2 (lower is better)
Translates to: PSHWNMYSLLNRYHLRANLFHYT*GRRISP
Trigger: AGGGCTTATTCTTCTCCCTCATGTGTAGTGAAACAA...ATTGGCTCTTAAATGGTACCTATTTAAGAGGCTGTACATGTTCCAGTGGGATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR-3UTR CCA 90 bp GGTTACCAGTTAAAGTCTCAGTGTGACTACTTGGACACCTATTTTTGTTTAGACGTAGTTGCACAGTACTaGGCAATTCTTAGCCTTCCC +
Preference number: 2 (lower is better)
Translates to: GYQLKSQCDYLDTYFCLDVVAQY*AILSLP
Trigger: GGGAAGGCTAAGAATTGCCCAGTACTGTGCAACTAC...GTCTAAACAAAAATAGGTGTCCAAGTAGTCACACTGAGACTTTAACTGGTAACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
3UTR-3UTR CCA 90 bp GGTTACCAGTTAAAGTCTCAGTGTGACTACTTGGACACCTATTTTTGTTTAGACTGGGAACCAGAAGCTTaGCCTCTTCTGATAAATGCC +
Preference number: 2 (lower is better)
Translates to: GYQLKSQCDYLDTYFCLDWEPEA*PLLINA
Trigger: GGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCA...GTCTAAACAAAAATAGGTGTCCAAGTAGTCACACTGAGACTTTAACTGGTAACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
3UTR CAA 90 bp GATGGCAGTTACTTAATGAAACAAGCGGGGGCTTCTGTTAAGTTCTaGATCCTTTATAAGGTTCAGGCTATCCAGTTTGGTAGAGTTAGA +
Preference number: 2 (lower is better)
Translates to: DGSYLMKQAGASVKF*ILYKVQAIQFGRVR
Trigger: TCTAACTCTACCAAACTGGATAGCCTGAACCTTATAAAGGATCAAGAACTTAACAGAAGCCCCCGCTTGTTTCATTAAGTAACTGCCATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR-3UTR GCA 90 bp GACACCTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATGGGAACCAGAAGAACATCTTGGGGAACTaGTTAGAAATGGGAACAGAT +
Preference number: 2 (lower is better)
Translates to: DTYFCLDTLFKGLHGNQKNILGN*LEMGTD
Trigger: ATCTGTTCCCATTTCTAAGCAGTTCCCCAAGATGTT...CTTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAGGTGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR-3UTR GCA 90 bp AAGTTCTTGATCCTTTATAAGGTTCAGGCTATCCAGTTTGGTAGAGTTAGAAGACACTATTCAAAGGGCTaGATGGGAACCAGAAGCTTG +
Preference number: 2 (lower is better)
Translates to: KFLILYKVQAIQFGRVRRHYSKG*MGTRSL
Trigger: CAAGCTTCTGGTTCCCATGCAGCCCTTTGAATAGTG...TCTTCTAACTCTACCAAACTGGATAGCCTGAACCTTATAAAGGATCAAGAACTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR-3UTR GCA 90 bp GGACACCTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATGGGAACCAGAACAAAACCTTTTGCTTTaGCAAAGCCAATTAAGTCCT +
Preference number: 2 (lower is better)
Translates to: GHLFLFRHTIQRAAWEPEQNLLL*QSQLSP
Trigger: AGGACTTAATTGGCTTTGGCAAAGCAAAAGGTTTTG...TTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAGGTGTCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
3UTR-3UTR GCA 90 bp GACACCTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATGGGAACCAGAAGCAAAACCTTTTGCTTTaGCAAAGCCAATTAAGTCCT +
Preference number: 2 (lower is better)
Translates to: DTYFCLDTLFKGLHGNQKQNLLL*QSQLSP
Trigger: AGGACTTAATTGGCTTTGGCAAAGCAAAAGGTTTTG...CTTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAGGTGTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
3UTR TCA 72 bp GGAGAATCGCTTGAACCCGGGAGACCGAGGTTGCAGTaGGACGGAGGTGGAGATTGCGCCACCGTACTCCAG +
Preference number: 3 (lower is better)
Translates to: GESLEPGRPRLQ*DGGGDCATVLQ
Trigger: CTGGAGTACGGTGGCGCAATCTCCACCTCCGTCTCACTGCAACCTCGGTCTCCCGGGTTCAAGCGATTCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR GCA 72 bp ATGCAGGAGAATCGCTTGAACCCGGGAGACCGAGGTTaGAGTGAGACGGAGGTGGAGATTGCGCCACCGTAC +
Preference number: 3 (lower is better)
Translates to: MQENRLNPGDRG*SETEVEIAPPY
Trigger: GTACGGTGGCGCAATCTCCACCTCCGTCTCACTGCAACCTCGGTCTCCCGGGTTCAAGCGATTCTCCTGCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR CCA 72 bp ATGGCTCAGCTGACACCTGCTGAGACTGCCCCCTTGTaGGAGATGAGGTTCAGCATTAAGAAGGAGGCAGCA +
Preference number: 3 (lower is better)
Translates to: MAQLTPAETAPL*EMRFSIKKEAA
Trigger: TGCTGCCTCCTTCTTAATGCTGAACCTCATCTCCCACAAGGGGGCAGTCTCAGCAGGTGTCAGCTGAGCCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR TCA 72 bp CAGGTGAGCGCCACAGTGCCTGGCCAAAGCTCGTTTTaGTCCTCATTCATATGTCATTGTCCTCAGAGAGGC +
Preference number: 3 (lower is better)
Translates to: QVSATVPGQSSF*SSFICHCPQRG
Trigger: GCCTCTCTGAGGACAATGACATATGAATGAGGATCAAAACGAGCTTTGGCCAGGCACTGTGGCGCTCACCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR CCA 72 bp GTGGCCTTGGGTAGGGCTTTCGTAGTTGCACAGTACTaGGCAATTCTTAGCCTTCCCTTGGTTCTAGCCTTG +
Preference number: 3 (lower is better)
Translates to: VALGRAFVVAQY*AILSLPLVLAL
Trigger: CAAGGCTAGAACCAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAACTACGAAAGCCCTACCCAAGGCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
3UTR TCA 72 bp GGCTGTCAGCTGGGAAAAGTTATTCTCCTGGGCCCTTaGGGCCAAGGTAGATTCAGAACTGAGGATACTTCT +
Preference number: 3 (lower is better)
Translates to: GCQLGKVILLGP*GQGRFRTEDTS
Trigger: AGAAGTATCCTCAGTTCTGAATCTACCTTGGCCTCAAGGGCCCAGGAGAATAACTTTTCCCAGCTGACAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR GCA 72 bp CCACACCCTGCTGGTAGGTACTCTTTAGAGGATATTTaGCCCTTAGGCCCTGTAACAACATCTTGGGGAACT +
Preference number: 3 (lower is better)
Translates to: PHPAGRYSLEDI*PLGPVTTSWGT
Trigger: AGTTCCCCAAGATGTTGTTACAGGGCCTAAGGGGCAAATATCCTCTAAAGAGTACCTACCAGCAGGGTGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR GCA 72 bp TTTGTTTCACTACACATGAGGGAGAAGAATAAGCCCTaGTATAGTGTTGGCCAGAGCACTGCGACTGACGCC +
Preference number: 3 (lower is better)
Translates to: FVSLHMREKNKP*YSVGQSTATDA
Trigger: GGCGTCAGTCGCAGTGCTCTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAGTGAAACAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
3UTR GCA 72 bp CAGAAGCTTGCTTCTTCAGACTCTGTTGGTCTCTGCTaGTTCCCATCCCACTGGAACATGTACAGCCTCTTA +
Preference number: 3 (lower is better)
Translates to: QKLASSDSVGLC*FPSHWNMYSLL
Trigger: TAAGAGGCTGTACATGTTCCAGTGGGATGGGAAGCAGCAGAGACCAACAGAGTCTGAAGAAGCAAGCTTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR CCA 72 bp CACACTATTCAAAGGGCTGCATGGGAACCAGAAGCTTaGCCTCTTCTGATAAATGCCTGGTACCTGCTATGT +
Preference number: 3 (lower is better)
Translates to: HTIQRAAWEPEA*PLLINAWYLLC
Trigger: ACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCATGCAGCCCTTTGAATAGTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
3UTR-3UTR CAA 90 bp TGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAATCCCTGGCCTTTATCTaGGCCAAACCTAACTTCCTT +
Preference number: 3 (lower is better)
Translates to: WEPEAWPLLINAWYLLCKSLAFI*AKPNFL
Trigger: AAGGAAGTTAGGTTTGGCCAAGATAAAGGCCAGGGA...TTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR TCA 72 bp TCTAAGACTGATTGCAGGGGTAGGTTTCCTGGTATCTaGGTGTTCAGGTGCAGAACTGGTTTTGTCCATAGG +
Preference number: 3 (lower is better)
Translates to: SKTDCRGRFPGI*VFRCRTGFVHR
Trigger: CCTATGGACAAAACCAGTTCTGCACCTGAACACTCAGATACCAGGAAACCTACCCCTGCAATCAGTCTTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR-3UTR CAA 90 bp GGTTACCAGTTAAAGTCTCAGTGTGACTACTTGGACACCTATTTTTGTTTAGACACAAGGCTGGTGGCCTaGGGTAGGGCTTTCGTAGTT +
Preference number: 3 (lower is better)
Translates to: GYQLKSQCDYLDTYFCLDTRLVA*GRAFVV
Trigger: AACTACGAAAGCCCTACCCAAGGCCACCAGCCTTGT...GTCTAAACAAAAATAGGTGTCCAAGTAGTCACACTGAGACTTTAACTGGTAACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
3UTR CCA 72 bp TTTCATAACTCAGAAGCTTGCTTCTTCAGACTCTGTTaGTCTCTGCTGCTTCCCATCCCACTGGAACATGTA +
Preference number: 3 (lower is better)
Translates to: FHNSEACFFRLC*SLLLPIPLEHV
Trigger: TACATGTTCCAGTGGGATGGGAAGCAGCAGAGACCAACAGAGTCTGAAGAAGCAAGCTTCTGAGTTATGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR GCA 72 bp GGTGCAGAACTGGTTTTGTCCATAGGAGAATGGTGGTaGATACCATTGAGAAGGTTATTAATTAGTGGTGCC +
Preference number: 3 (lower is better)
Translates to: GAELVLSIGEWW*IPLRRLLISGA
Trigger: GGCACCACTAATTAATAACCTTCTCAATGGTATGCACCACCATTCTCCTATGGACAAAACCAGTTCTGCACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR CCA 72 bp GTGGTGTATGTTTGGGAAGACCCAAAGGTGCTAGCTTaGCTAGCACCAAGTAATCTTTTTACAGGGATTAGA +
Preference number: 3 (lower is better)
Translates to: VVYVWEDPKVLA*LAPSNLFTGIR
Trigger: TCTAATCCCTGTAAAAAGATTACTTGGTGCTAGCCAAGCTAGCACCTTTGGGTCTTCCCAAACATACACCAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR CCA 72 bp ATGAAGTTATTAGAGTCTGGATTAGTGGTGTATGTTTaGGAAGACCCAAAGGTGCTAGCTTGGCTAGCACCA +
Preference number: 3 (lower is better)
Translates to: MKLLESGLVVYV*EDPKVLAWLAP
Trigger: TGGTGCTAGCCAAGCTAGCACCTTTGGGTCTTCCCAAACATACACCACTAATCCAGACTCTAATAACTTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR-3UTR CAA 90 bp AAGTTCTTGATCCTTTATAAGGTTCAGGCTATCCAGTTTGGTAGAGTTAGAAGAGAGGCAGATAATTGCTaGAACCCAGGAGGCAGAGGT +
Preference number: 3 (lower is better)
Translates to: KFLILYKVQAIQFGRVRREADNC*NPGGRG
Trigger: ACCTCTGCCTCCTGGGTTCAAGCAATTATCTGCCTC...TCTTCTAACTCTACCAAACTGGATAGCCTGAACCTTATAAAGGATCAAGAACTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR TCA 72 bp GTAGATTCAGAACTGAGGATACTTCTGTGTATCATGTaGTACCATTCCAGCCACTTGTCTTCCTCAGCTACT +
Preference number: 3 (lower is better)
Translates to: VDSELRILLCIM*YHSSHLSSSAT
Trigger: AGTAGCTGAGGAAGACAAGTGGCTGGAATGGTATCACATGATACACAGAAGTATCCTCAGTTCTGAATCTAC
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR CCA 72 bp CTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATaGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCC +
Preference number: 3 (lower is better)
Translates to: LFLFRHTIQRAA*EPEAWPLLINA
Trigger: GGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
3UTR-3UTR CAA 90 bp TTTGTTTCACTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGTCAAAACCTTTTGCTTaGCCAAAGCCAATTAAGTCC +
Preference number: 3 (lower is better)
Translates to: FVSLHMREKNKPCYSVGQSKPFA*PKPIKS
Trigger: GGACTTAATTGGCTTTGGCAAAGCAAAAGGTTTTGA...CTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAGTGAAACAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
3UTR-3UTR CAA 90 bp TGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAATGTACTCAAAACCTTTaGCTTTGCCAAAGCCAATTA +
Preference number: 3 (lower is better)
Translates to: WEPEAWPLLINAWYLLCKCTQNL*LCQSQL
Trigger: TAATTGGCTTTGGCAAAGCAAAAGGTTTTGAGTACA...TTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
3UTR-3UTR CAA 90 bp AAGTTCTTGATCCTTTATAAGGTTCAGGCTATCCAGTTTGGTAGAGTTAGAAGAGGTGCAGAACTGGTTTaGTCCATAGGAGAATGGTGG +
Preference number: 3 (lower is better)
Translates to: KFLILYKVQAIQFGRVRRGAELV*SIGEWW
Trigger: CCACCATTCTCCTATGGACAAAACCAGTTCTGCACC...TCTTCTAACTCTACCAAACTGGATAGCCTGAACCTTATAAAGGATCAAGAACTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR CCA 72 bp TCAGGTGCAGAACTGGTTTTGTCCATAGGAGAATGGTaGTGCATACCATTGAGAAGGTTATTAATTAGTGGT +
Preference number: 3 (lower is better)
Translates to: SGAELVLSIGEW*CIPLRRLLISG
Trigger: ACCACTAATTAATAACCTTCTCAATGGTATGCACCACCATTCTCCTATGGACAAAACCAGTTCTGCACCTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR-3UTR CAA 90 bp GAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAAAGATGTACTCAAAACCTTTaGCTTTGCCAAAGCCAATTA +
Preference number: 3 (lower is better)
Translates to: EPEAWPLLINAWYLLCKRCTQNL*LCQSQL
Trigger: TAATTGGCTTTGGCAAAGCAAAAGGTTTTGAGTACA...TCTTTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
3UTR CCA 72 bp TGTTCAGGTGCAGAACTGGTTTTGTCCATAGGAGAATaGTGGTGCATACCATTGAGAAGGTTATTAATTAGT +
Preference number: 3 (lower is better)
Translates to: CSGAELVLSIGE*WCIPLRRLLIS
Trigger: ACTAATTAATAACCTTCTCAATGGTATGCACCACCATTCTCCTATGGACAAAACCAGTTCTGCACCTGAACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR-3UTR CAA 90 bp GGTTACCAGTTAAAGTCTCAGTGTGACTACTTGGACACCTATTTTTGTTTAGACCCCTTGGTTCTAGCCTaGATTAGAGATAGTCTTTTT +
Preference number: 3 (lower is better)
Translates to: GYQLKSQCDYLDTYFCLDPLVLA*IRDSLF
Trigger: AAAAAGACTATCTCTAATCAAGGCTAGAACCAAGGG...GTCTAAACAAAAATAGGTGTCCAAGTAGTCACACTGAGACTTTAACTGGTAACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR TCA 72 bp AGTCACTCCCAAAGATCTAACTTACTGAATGTAGGATaGTCTCACAGATGTATTAGGGCAAAACAAAATGGT +
Preference number: 3 (lower is better)
Translates to: SHSQRSNLLNVG*SHRCIRAKQNG
Trigger: ACCATTTTGTTTTGCCCTAATACATCTGTGAGATCATCCTACATTCAGTAAGTTAGATCTTTGGGAGTGACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR TCA 72 bp ATATTGACACAGGTAGATATAGGGAATGGAACTGAATaGACCCAAGGTGTTACATTTTGTTTCACTACACAT +
Preference number: 3 (lower is better)
Translates to: ILTQVDIGNGTE*TQGVTFCFTTH
Trigger: ATGTGTAGTGAAACAAAATGTAACACCTTGGGTTCATTCAGTTCCATTCCCTATATCTACCTGTGTCAATAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR TCA 90 bp GCCCACCCCTCTAGAACCGACTACACCCATGAGCAGCAGTACAGAATTCCCAGGCTTGCCTCAGCCTCCTaGGTAGCTAGGACTACAGGG +
Preference number: 4 (lower is better)
Translates to: AHPSRTDYTHEQQYRIPRLASAS*VARTTG
Trigger: CCCTGTAGTCCTAGCTACTCAGGAGGCTGAGGCAAG...CCTGGGAATTCTGTACTGCTGCTCATGGGTGTAGTCGGTTCTAGAGGGGTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR GCA 90 bp TGCTATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTCCCAGCTACATGGGCTaGTGTCTGGGCCAGGATCTT +
Preference number: 4 (lower is better)
Translates to: CYSVGQSTATDATGWVTSPSYMG*CLGQDL
Trigger: AAGATCCTGGCCCAGACAGCAGCCCATGTAGCTGGG...ACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTATAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp ATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTTAAATCTGGGCCAGGATCTTaGGGCGTCGGTTGGGGTGCA +
Preference number: 4 (lower is better)
Translates to: IVLARALRLTPQAGLPVKSGPGS*GVGWGA
Trigger: TGCACCCCAACCGACGCCCCAAGATCCTGGCCCAGA...TTTAACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp GCCCACCCCTCTAGAACCGACTACACCCATGAGCAGCAGTACAGAATTCCCAGGACACCTGATATGCGCTaGTTCCCCCATGGGTCAGCC +
Preference number: 4 (lower is better)
Translates to: AHPSRTDYTHEQQYRIPRTPDMR*FPHGSA
Trigger: GGCTGACCCATGGGGGAACCAGCGCATATCAGGTGT...CCTGGGAATTCTGTACTGCTGCTCATGGGTGTAGTCGGTTCTAGAGGGGTGGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR TCA 90 bp TGCTATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTGTGTATGCACACACCTaGTATGCGCTGGTTCCCCCA +
Preference number: 4 (lower is better)
Translates to: CYSVGQSTATDATGWVTSVYAHT*YALVPP
Trigger: TGGGGGAACCAGCGCATATCAGGTGTGTGCATACAC...ACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTATAGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR TCA 90 bp GCCCACCCCTCTAGAACCGACTACACCCATGAGCAGCAGTACAGAATTCCCAGGCACGCCAGTGGAAATTaGAGCCTTCGAGTAGGGCGA +
Preference number: 4 (lower is better)
Translates to: AHPSRTDYTHEQQYRIPRHASGN*SLRVGR
Trigger: TCGCCCTACTCGAAGGCTTCAATTTCCACTGGCGTG...CCTGGGAATTCTGTACTGCTGCTCATGGGTGTAGTCGGTTCTAGAGGGGTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR TCA 90 bp GCCCACCCCTCTAGAACCGACTACACCCATGAGCAGCAGTACAGAATTCCCAGGAGGCAGAGGTTGCAGTaGGTAGAGACTGTGCCACTG +
Preference number: 4 (lower is better)
Translates to: AHPSRTDYTHEQQYRIPRRQRLQ*VETVPL
Trigger: CAGTGGCACAGTCTCTACTCACTGCAACCTCTGCCT...CCTGGGAATTCTGTACTGCTGCTCATGGGTGTAGTCGGTTCTAGAGGGGTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR TCA 90 bp ATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTTAAAAGGTGGAGCTTGCAGTaGGCTGAGATCGCGCCACTG +
Preference number: 4 (lower is better)
Translates to: IVLARALRLTPQAGLPVKRWSLQ*AEIAPL
Trigger: CAGTGGCGCGATCTCAGCTCACTGCAAGCTCCACCT...TTTAACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR TCA 90 bp TGCTATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTCCTCCCTGGTTCAAATaGTTCTACTGCCTCAGCCTC +
Preference number: 4 (lower is better)
Translates to: CYSVGQSTATDATGWVTSPPWFK*FYCLSL
Trigger: GAGGCTGAGGCAGTAGAATCATTTGAACCAGGGAGG...ACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTATAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR TCA 90 bp ATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTTAAATGCCCAGAGTGGTTCTaGATTCCTTGCCTCAGGCGG +
Preference number: 4 (lower is better)
Translates to: IVLARALRLTPQAGLPVKCPEWF*IPCLRR
Trigger: CCGCCTGAGGCAAGGAATTCAGAACCACTCTGGGCA...TTTAACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CCA 90 bp CTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGAGCACTGCGTCTTGGGGCGTCGGTTaGGGTGCACCTCGTAGTCAG +
Preference number: 4 (lower is better)
Translates to: LHMREKNKPCYSVGQSTASWGVG*GAPRSQ
Trigger: CTGACTACGAGGTGCACCCCAACCGACGCCCCAAGA...CGCAGTGCTCTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp GCATGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTTCTGGGCCAGGATCTTaGGGCGTCGGTTGGGGTGCA +
Preference number: 4 (lower is better)
Translates to: AWEPEAWPLLINAWYLLCSGPGS*GVGWGA
Trigger: TGCACCCCAACCGACGCCCCAAGATCCTGGCCCAGA...ACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp CTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGAGCACTGCGACATGGGCTGCTGTCTaGGCCAGGATCTTGGGGCGT +
Preference number: 4 (lower is better)
Translates to: LHMREKNKPCYSVGQSTATWAAV*ARILGR
Trigger: ACGCCCCAAGATCCTGGCCCAGACAGCAGCCCATGT...CGCAGTGCTCTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp CTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGAGCACTGCGTGGCACCTCTATCCCTaGCAGCAGCACTACCCCTCG +
Preference number: 4 (lower is better)
Translates to: LHMREKNKPCYSVGQSTAWHLYP*QQHYPS
Trigger: CGAGGGGTAGTGCTGCTGCCAGGGATAGAGGTGCCA...CGCAGTGCTCTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR TCA 90 bp GGACACCTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATGGGAACCAGAAGTGAGACCCTGGGGCTaGGCCAGCTCCGGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: GHLFLFRHTIQRAAWEPEVRPWG*ASSGLC
Trigger: GCAGAGCCCGGAGCTGGCTCAGCCCCAGGGTCTCAC...TTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAGGTGTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp GCATGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTCCTGGCAGCGGTAGGTaGAAGGCTGGAGGCAAGAGT +
Preference number: 4 (lower is better)
Translates to: AWEPEAWPLLINAWYLLCPGSGR*KAGGKS
Trigger: ACTCTTGCCTCCAGCCTTCCACCTACCGCTGCCAGG...ACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp CTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGAGCACTGCGGTCAGCATTCGGAGGTaGCAGCTCTGCAAGAAGGGC +
Preference number: 4 (lower is better)
Translates to: LHMREKNKPCYSVGQSTAVSIRR*QLCKKG
Trigger: GCCCTTCTTGCAGAGCTGCCACCTCCGAATGCTGAC...CGCAGTGCTCTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp GCATGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAGCTCCGGGCTCTGCTaGGATTCCCAGGCTTCTTGG +
Preference number: 4 (lower is better)
Translates to: AWEPEAWPLLINAWYLLCSSGLC*DSQASW
Trigger: CCAAGAAGCCTGGGAATCCCAGCAGAGCCCGGAGCT...ACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp TTGGGTAGGGCTTTCGTAGTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTTGAGCTCCGGGCTCTGCTaGGATTCCCAGGCTTCTTGG +
Preference number: 4 (lower is better)
Translates to: LGRAFVVAQYWAILSLPLSSGLC*DSQASW
Trigger: CCAAGAAGCCTGGGAATCCCAGCAGAGCCCGGAGCT...CAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAACTACGAAAGCCCTACCCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp GCATGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTGCTGAGGCAGGAGAATaGCATGAACCCCGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: AWEPEAWPLLINAWYLLCAEAGE*HEPRRW
Trigger: CCACCTCCGGGGTTCATGCCATTCTCCTGCCTCAGC...ACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR TCA 90 bp TGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAAACATGGCAGGCGTGCTaGGTACCAGGAAGGCCAGGG +
Preference number: 4 (lower is better)
Translates to: WEPEAWPLLINAWYLLCKTWQAC*VPGRPG
Trigger: CCCTGGCCTTCCTGGTACTCAGCACGCCTGCCATGT...TTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR TCA 90 bp TTGGGTAGGGCTTTCGTAGTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTTGTTGGTAGGAATGGCCTaGGTTGGCGTTGTGGGCAGG +
Preference number: 4 (lower is better)
Translates to: LGRAFVVAQYWAILSLPLLVGMA*VGVVGR
Trigger: CCTGCCCACAACGCCAACTCAGGCCATTCCTACCAA...CAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAACTACGAAAGCCCTACCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR TCA 90 bp GCCCACCCCTCTAGAACCGACTACACCCATGAGCAGCAGTACAGAATTCCCAGGAGGTTTCCTGGTATCTaGGTGTTCAGGTGCAGAACT +
Preference number: 4 (lower is better)
Translates to: AHPSRTDYTHEQQYRIPRRFPGI*VFRCRT
Trigger: AGTTCTGCACCTGAACACTCAGATACCAGGAAACCT...CCTGGGAATTCTGTACTGCTGCTCATGGGTGTAGTCGGTTCTAGAGGGGTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR TCA 90 bp ATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTTAAACCCCCTTGTGGGAGATaGGGTTCAGCATTAAGAAGG +
Preference number: 4 (lower is better)
Translates to: IVLARALRLTPQAGLPVKPPCGR*GSALRR
Trigger: CCTTCTTAATGCTGAACCTCATCTCCCACAAGGGGG...TTTAACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR GCA 90 bp TGCTATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTGAGTTCATTGTACCATaGCACCTGGAAGGGGTAAAC +
Preference number: 4 (lower is better)
Translates to: CYSVGQSTATDATGWVTSEFIVP*HLEGVN
Trigger: GTTTACCCCTTCCAGGTGGCATGGTACAATGAACTC...ACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTATAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR GCA 90 bp TTGGGTAGGGCTTTCGTAGTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTTGCCCAGCTACATGGGCTaGTGTCTGGGCCAGGATCTT +
Preference number: 4 (lower is better)
Translates to: LGRAFVVAQYWAILSLPLPSYMG*CLGQDL
Trigger: AAGATCCTGGCCCAGACAGCAGCCCATGTAGCTGGG...CAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAACTACGAAAGCCCTACCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR GCA 90 bp TGCTATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTCACTATTCAAAGGGCTaGATGGGAACCAGAAGCTTG +
Preference number: 4 (lower is better)
Translates to: CYSVGQSTATDATGWVTSHYSKG*MGTRSL
Trigger: CAAGCTTCTGGTTCCCATGCAGCCCTTTGAATAGTG...ACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTATAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR GCA 90 bp TGCTATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTGAGAAGAATAAGCCCTaGTATAGTGTTGGCCAGAGC +
Preference number: 4 (lower is better)
Translates to: CYSVGQSTATDATGWVTSEKNKP*YSVGQS
Trigger: GCTCTGGCCAACACTATAGCAGGGCTTATTCTTCTC...ACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTATAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp TTTGTTTCACTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGGCAGCCCCAGCTACATaGGCTGCTGTCTGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: FVSLHMREKNKPCYSVGQAAPAT*AAVWAR
Trigger: CCTGGCCCAGACAGCAGCCCATGTAGCTGGGGCTGC...CTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAGTGAAACAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp TTGGGTAGGGCTTTCGTAGTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTTGACACCTGATATGCGCTaGTTCCCCCATGGGTCAGCC +
Preference number: 4 (lower is better)
Translates to: LGRAFVVAQYWAILSLPLTPDMR*FPHGSA
Trigger: GGCTGACCCATGGGGGAACCAGCGCATATCAGGTGT...CAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAACTACGAAAGCCCTACCCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp GCATGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTTCTGGGTGGCAGATCTaGCACCTCTATCCCTGGCAG +
Preference number: 4 (lower is better)
Translates to: AWEPEAWPLLINAWYLLCSGWQI*HLYPWQ
Trigger: CTGCCAGGGATAGAGGTGCCAGATCTGCCACCCAGA...ACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCATGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp TGCTATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTGTCCAATCACGCCAGTaGAAATTGAAGCCTTCGAGT +
Preference number: 4 (lower is better)
Translates to: CYSVGQSTATDATGWVTSVQSRQ*KLKPSS
Trigger: ACTCGAAGGCTTCAATTTCCACTGGCGTGATTGGAC...ACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTATAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp ATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTTAAAAATAGGGCCAATCGTTaGGCAGGTGGAGTGGAGAAG +
Preference number: 4 (lower is better)
Translates to: IVLARALRLTPQAGLPVKNRANR*AGGVEK
Trigger: CTTCTCCACTCCACCTGCCCAACGATTGGCCCTATT...TTTAACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp TGCTATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTGAAAAGTTATTCTCCTaGGCCCTTGAGGCCAAGGTA +
Preference number: 4 (lower is better)
Translates to: CYSVGQSTATDATGWVTSEKLFS*ALEAKV
Trigger: TACCTTGGCCTCAAGGGCCCAGGAGAATAACTTTTC...ACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTATAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CCA 90 bp TGCTATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTTTCTTCAGACTCTGTTaGTCTCTGCTGCTTCCCATC +
Preference number: 4 (lower is better)
Translates to: CYSVGQSTATDATGWVTSFFRLC*SLLLPI
Trigger: GATGGGAAGCAGCAGAGACCAACAGAGTCTGAAGAA...ACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTATAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR TCA 90 bp TTTGTTTCACTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGACATGGCAGGCGTGCTaGGTACCAGGAAGGCCAGGG +
Preference number: 4 (lower is better)
Translates to: FVSLHMREKNKPCYSVGQTWQAC*VPGRPG
Trigger: CCCTGGCCTTCCTGGTACTCAGCACGCCTGCCATGT...CTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAGTGAAACAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR TCA 90 bp GCATGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTGTGTATGCACACACCTaGTATGCGCTGGTTCCCCCA +
Preference number: 4 (lower is better)
Translates to: AWEPEAWPLLINAWYLLCVYAHT*YALVPP
Trigger: TGGGGGAACCAGCGCATATCAGGTGTGTGCATACAC...ACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCATGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR TCA 90 bp GGTTACCAGTTAAAGTCTCAGTGTGACTACTTGGACACCTATTTTTGTTTAGACGTGAGACCCTGGGGCTaGGCCAGCTCCGGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: GYQLKSQCDYLDTYFCLDVRPWG*ASSGLC
Trigger: GCAGAGCCCGGAGCTGGCTCAGCCCCAGGGTCTCAC...GTCTAAACAAAAATAGGTGTCCAAGTAGTCACACTGAGACTTTAACTGGTAACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR TCA 90 bp TTTGTTTCACTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGCCAGAGCACTGCGACTaGCGCCACAGGCTGGGTTAC +
Preference number: 4 (lower is better)
Translates to: FVSLHMREKNKPCYSVGQPEHCD*RHRLGY
Trigger: GTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGG...CTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAGTGAAACAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR TCA 90 bp TGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAATCAGCTGACACCTGCTaGGACTGCCCCCTTGTGGGA +
Preference number: 4 (lower is better)
Translates to: WEPEAWPLLINAWYLLCKSADTC*DCPLVG
Trigger: TCCCACAAGGGGGCAGTCTCAGCAGGTGTCAGCTGA...TTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR GCA 90 bp GAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAAAGAGCCAGCTCCGGGCTCTaGTGGGATTCCCAGGCTTCT +
Preference number: 4 (lower is better)
Translates to: EPEAWPLLINAWYLLCKRASSGL*WDSQAS
Trigger: AGAAGCCTGGGAATCCCAGCAGAGCCCGGAGCTGGC...TCTTTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR GCA 90 bp TTGGGTAGGGCTTTCGTAGTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTTGTCGCCCAGACTGGAGTaGAGTGGTGTGATCTCAGCT +
Preference number: 4 (lower is better)
Translates to: LGRAFVVAQYWAILSLPLSPRLE*SGVISA
Trigger: AGCTGAGATCACACCACTGCACTCCAGTCTGGGCGA...CAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAACTACGAAAGCCCTACCCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR GCA 90 bp CTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGAGCACTGCGCCAAGAGGTACCCTTTaGAGAAGGATGTGTGGGCAG +
Preference number: 4 (lower is better)
Translates to: LHMREKNKPCYSVGQSTAPRGTL*RRMCGQ
Trigger: CTGCCCACACATCCTTCTGCAAAGGGTACCTCTTGG...CGCAGTGCTCTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CCA 90 bp GGACACCTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATGGGAACCAGAAGCAGCCCCAGCTACATaGGCTGCTGTCTGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: GHLFLFRHTIQRAAWEPEAAPAT*AAVWAR
Trigger: CCTGGCCCAGACAGCAGCCCATGTAGCTGGGGCTGC...TTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAGGTGTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp TGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAAGCGCTGGTTCCCCCATaGGTCAGCCTCCACATCTTG +
Preference number: 4 (lower is better)
Translates to: WEPEAWPLLINAWYLLCKALVPP*VSLHIL
Trigger: CAAGATGTGGAGGCTGACCCATGGGGGAACCAGCGC...TTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp ATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTTAAAATTCAAAGGGCTGCATaGGAACCAGAAGCTTGGCCT +
Preference number: 4 (lower is better)
Translates to: IVLARALRLTPQAGLPVKIQRAA*EPEAWP
Trigger: AGGCCAAGCTTCTGGTTCCCATGCAGCCCTTTGAAT...TTTAACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR TCA 90 bp CTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGAGCACTGCGGTAGGTACACAGTCATaGGGTTTTCTGGGTGGCAGA +
Preference number: 4 (lower is better)
Translates to: LHMREKNKPCYSVGQSTAVGTQS*GFLGGR
Trigger: TCTGCCACCCAGAAAACCTCATGACTGTGTACCTAC...CGCAGTGCTCTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR TCA 90 bp TTGGGTAGGGCTTTCGTAGTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTTGATTCTCCTGGGCCCTTaGGGCCAAGGTAGATTCAGA +
Preference number: 4 (lower is better)
Translates to: LGRAFVVAQYWAILSLPLILLGP*GQGRFR
Trigger: TCTGAATCTACCTTGGCCTCAAGGGCCCAGGAGAAT...CAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAACTACGAAAGCCCTACCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR GCA 90 bp CTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGAGCACTGCGGTGTCCTCGATCTTCTaGTTCAGCTCTGCGACTTTC +
Preference number: 4 (lower is better)
Translates to: LHMREKNKPCYSVGQSTAVSSIF*FSSATF
Trigger: GAAAGTCGCAGAGCTGAAGCAGAAGATCGAGGACAC...CGCAGTGCTCTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR GCA 90 bp GACACCTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATGGGAACCAGAAGGCCAGCTCCGGGCTCTaGTGGGATTCCCAGGCTTCT +
Preference number: 4 (lower is better)
Translates to: DTYFCLDTLFKGLHGNQKASSGL*WDSQAS
Trigger: AGAAGCCTGGGAATCCCAGCAGAGCCCGGAGCTGGC...CTTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAGGTGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp GAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAAAGACCTGGCAGCGGTAGGTaGAAGGCTGGAGGCAAGAGT +
Preference number: 4 (lower is better)
Translates to: EPEAWPLLINAWYLLCKRPGSGR*KAGGKS
Trigger: ACTCTTGCCTCCAGCCTTCCACCTACCGCTGCCAGG...TCTTTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp TGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAAGCACTACCCCTCGGATaGCAAACCAGCCCCCAAATC +
Preference number: 4 (lower is better)
Translates to: WEPEAWPLLINAWYLLCKALPLG*QTSPQI
Trigger: GATTTGGGGGCTGGTTTGCCATCCGAGGGGTAGTGC...TTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp GTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTTGGTTCTAGCCTTGATTAGATCTGGGTGGCAGATCTaGCACCTCTATCCCTGGCAG +
Preference number: 4 (lower is better)
Translates to: VAQYWAILSLPLVLALIRSGWQI*HLYPWQ
Trigger: CTGCCAGGGATAGAGGTGCCAGATCTGCCACCCAGA...TCTAATCAAGGCTAGAACCAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp CTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGAGCACTGCGATTCAAAGGGCTGCATaGGAACCAGAAGCTTGGCCT +
Preference number: 4 (lower is better)
Translates to: LHMREKNKPCYSVGQSTAIQRAA*EPEAWP
Trigger: AGGCCAAGCTTCTGGTTCCCATGCAGCCCTTTGAAT...CGCAGTGCTCTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
3UTR CAA 72 bp ACAGGTGAGCGCCACAGTGCCTGGCCAAAGCTCGTTTaGATCCTCATTCATATGTCATTGTCCTCAGAGAGG +
Preference number: 4 (lower is better)
Translates to: TGERHSAWPKLV*ILIHMSLSSER
Trigger: CCTCTCTGAGGACAATGACATATGAATGAGGATCAAAACGAGCTTTGGCCAGGCACTGTGGCGCTCACCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR TCA 90 bp TTTGTTTCACTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGTCTGCAAGAAGGGCTTaGGGGCCCGGTCAAACATGG +
Preference number: 4 (lower is better)
Translates to: FVSLHMREKNKPCYSVGQSARRA*GPGQTW
Trigger: CCATGTTTGACCGGGCCCTCAAGCCCTTCTTGCAGA...CTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAGTGAAACAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR TCA 90 bp GCATGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTGTAGGTACACAGTCATaGGGTTTTCTGGGTGGCAGA +
Preference number: 4 (lower is better)
Translates to: AWEPEAWPLLINAWYLLCVGTQS*GFLGGR
Trigger: TCTGCCACCCAGAAAACCTCATGACTGTGTACCTAC...ACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR TCA 90 bp GTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTTGGTTCTAGCCTTGATTAGACACGCCAGTGGAAATTaGAGCCTTCGAGTAGGGCGA +
Preference number: 4 (lower is better)
Translates to: VAQYWAILSLPLVLALIRHASGN*SLRVGR
Trigger: TCGCCCTACTCGAAGGCTTCAATTTCCACTGGCGTG...TCTAATCAAGGCTAGAACCAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR TCA 90 bp TGTAACAACATCTTGGGGAACTGCTTAGAAATGGGAACAGATAGAGTCTTGGCTGGCAGGAGAATGGCATaGACCCCGGAGGTGGAGCTT +
Preference number: 4 (lower is better)
Translates to: CNNILGNCLEMGTDRVLAGRRMA*TPEVEL
Trigger: AAGCTCCACCTCCGGGGTTCATGCCATTCTCCTGCC...AGCCAAGACTCTATCTGTTCCCATTTCTAAGCAGTTCCCCAAGATGTTGTTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR GCA 90 bp TTGGGTAGGGCTTTCGTAGTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTTGGCTGAGGCAGATAATTaGTTGAACCCAGGAGGCAGA +
Preference number: 4 (lower is better)
Translates to: LGRAFVVAQYWAILSLPLAEADN*LNPGGR
Trigger: TCTGCCTCCTGGGTTCAAGCAATTATCTGCCTCAGC...CAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAACTACGAAAGCCCTACCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CCA 90 bp GGACACCTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATGGGAACCAGAAGCGCTGGTTCCCCCATaGGTCAGCCTCCACATCTTG +
Preference number: 4 (lower is better)
Translates to: GHLFLFRHTIQRAAWEPEALVPP*VSLHIL
Trigger: CAAGATGTGGAGGCTGACCCATGGGGGAACCAGCGC...TTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAGGTGTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp GAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAAAGAGGAAGACAAGGCTGGTaGCCTTGGGTAGGGCTTTCG +
Preference number: 4 (lower is better)
Translates to: EPEAWPLLINAWYLLCKRGRQGW*PWVGLS
Trigger: CGAAAGCCCTACCCAAGGCCACCAGCCTTGTCTTCC...TCTTTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp TTTGTTTCACTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGGGAAGACAAGGCTGGTaGCCTTGGGTAGGGCTTTCG +
Preference number: 4 (lower is better)
Translates to: FVSLHMREKNKPCYSVGQGRQGW*PWVGLS
Trigger: CGAAAGCCCTACCCAAGGCCACCAGCCTTGTCTTCC...CTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAGTGAAACAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp ATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTTAAAGTAATCCTAGCTATTTaGGAGGCTGATGCAGGAGAA +
Preference number: 4 (lower is better)
Translates to: IVLARALRLTPQAGLPVKVILAI*EADAGE
Trigger: TTCTCCTGCATCAGCCTCCCAAATAGCTAGGATTAC...TTTAACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CCA 90 bp GCATGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAGAAGGAGGCAGCAGTaGCAAAGTAGGCCCTTTAAC +
Preference number: 4 (lower is better)
Translates to: AWEPEAWPLLINAWYLLCRRRQQ*QSRPFN
Trigger: GTTAAAGGGCCTACTTTGCCACTGCTGCCTCCTTCT...ACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCATGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR TCA 90 bp GGTTACCAGTTAAAGTCTCAGTGTGACTACTTGGACACCTATTTTTGTTTAGACCCAGAGCACTGCGACTaGCGCCACAGGCTGGGTTAC +
Preference number: 4 (lower is better)
Translates to: GYQLKSQCDYLDTYFCLDPEHCD*RHRLGY
Trigger: GTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGG...GTCTAAACAAAAATAGGTGTCCAAGTAGTCACACTGAGACTTTAACTGGTAACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR TCA 90 bp ATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTTAAATATAGGGAATGGAACTaGATGAACCCAAGGTGTTAC +
Preference number: 4 (lower is better)
Translates to: IVLARALRLTPQAGLPVKYREWN*MNPRCY
Trigger: GTAACACCTTGGGTTCATTCAGTTCCATTCCCTATA...TTTAACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR TCA 90 bp TTGGGTAGGGCTTTCGTAGTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTTGTTCTTCAGGCTAGCCTaGGGCACATTCTTAGGCATT +
Preference number: 4 (lower is better)
Translates to: LGRAFVVAQYWAILSLPLFFRLA*GTFLGI
Trigger: AATGCCTAAGAATGTGCCTCAGGCTAGCCTGAAGAA...CAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAACTACGAAAGCCCTACCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR GCA 90 bp TTGGGTAGGGCTTTCGTAGTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTTGGAGAAGAATAAGCCCTaGTATAGTGTTGGCCAGAGC +
Preference number: 4 (lower is better)
Translates to: LGRAFVVAQYWAILSLPLEKNKP*YSVGQS
Trigger: GCTCTGGCCAACACTATAGCAGGGCTTATTCTTCTC...CAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAACTACGAAAGCCCTACCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR GCA 90 bp GACACCTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATGGGAACCAGAAGGTGGTGCCTTTCTCTTaGAGTGTGCCCAGCTGGCTG +
Preference number: 4 (lower is better)
Translates to: DTYFCLDTLFKGLHGNQKVVPFS*SVPSWL
Trigger: CAGCCAGCTGGGCACACTGCAAGAGAAAGGCACCAC...CTTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAGGTGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR GCA 90 bp GCCCACCCCTCTAGAACCGACTACACCCATGAGCAGCAGTACAGAATTCCCAGGAAAAATTTCAAACTCTaGCTTTTGCTTACCAAGGGG +
Preference number: 4 (lower is better)
Translates to: AHPSRTDYTHEQQYRIPRKNFKL*LLLTKG
Trigger: CCCCTTGGTAAGCAAAAGGCAGAGTTTGAAATTTTT...CCTGGGAATTCTGTACTGCTGCTCATGGGTGTAGTCGGTTCTAGAGGGGTGGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CCA 90 bp GGACACCTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATGGGAACCAGAAGTCAGCATTCGGAGGTaGCAGCTCTGCAAGAAGGGC +
Preference number: 4 (lower is better)
Translates to: GHLFLFRHTIQRAAWEPEVSIRR*QLCKKG
Trigger: GCCCTTCTTGCAGAGCTGCCACCTCCGAATGCTGAC...TTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAGGTGTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp GAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAAAGACACACACTGGTCCACTaGGTCAGTCAGCATTCGGAG +
Preference number: 4 (lower is better)
Translates to: EPEAWPLLINAWYLLCKRHTLVH*VSQHSE
Trigger: CTCCGAATGCTGACTGACCCAGTGGACCAGTGTGTG...TCTTTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp GAACTGAATGAACCCAAGGTGTTACATTTTGTTTCACTACACATGAGGGAGAAGACATGGGCTGCTGTCTaGGCCAGGATCTTGGGGCGT +
Preference number: 4 (lower is better)
Translates to: ELNEPKVLHFVSLHMREKTWAAV*ARILGR
Trigger: ACGCCCCAAGATCCTGGCCCAGACAGCAGCCCATGT...CTTCTCCCTCATGTGTAGTGAAACAAAATGTAACACCTTGGGTTCATTCAGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp GCATGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTGTCCAATCACGCCAGTaGAAATTGAAGCCTTCGAGT +
Preference number: 4 (lower is better)
Translates to: AWEPEAWPLLINAWYLLCVQSRQ*KLKPSS
Trigger: ACTCGAAGGCTTCAATTTCCACTGGCGTGATTGGAC...ACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCATGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp TTGGGTAGGGCTTTCGTAGTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTTGAAATCAGGGTCCACATaGGAGAAAATCAAGGGCCAG +
Preference number: 4 (lower is better)
Translates to: LGRAFVVAQYWAILSLPLKSGST*EKIKGQ
Trigger: CTGGCCCTTGATTTTCTCCCATGTGGACCCTGATTT...CAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAACTACGAAAGCCCTACCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp TTGGGTAGGGCTTTCGTAGTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTTGCCCTGGCCTTTATCTTaGCCAAACCTAACTTCCTTG +
Preference number: 4 (lower is better)
Translates to: LGRAFVVAQYWAILSLPLPWPLS*PNLTSL
Trigger: CAAGGAAGTTAGGTTTGGCCAAGATAAAGGCCAGGG...CAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAACTACGAAAGCCCTACCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR CAA 72 bp ACACACTATTCAAAGGGCTGCATGGGAACCAGAAGCTaGGCCTCTTCTGATAAATGCCTGGTACCTGCTATG +
Preference number: 4 (lower is better)
Translates to: THYSKGCMGTRS*ASSDKCLVPAM
Trigger: CATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR TCA 90 bp GAACTGAATGAACCCAAGGTGTTACATTTTGTTTCACTACACATGAGGGAGAAGTCTGCAAGAAGGGCTTaGGGGCCCGGTCAAACATGG +
Preference number: 4 (lower is better)
Translates to: ELNEPKVLHFVSLHMREKSARRA*GPGQTW
Trigger: CCATGTTTGACCGGGCCCTCAAGCCCTTCTTGCAGA...CTTCTCCCTCATGTGTAGTGAAACAAAATGTAACACCTTGGGTTCATTCAGTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR TCA 90 bp CTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGAGCACTGCGTTATATAGGGATCAGTaGGCACTGATAACCAAGAGG +
Preference number: 4 (lower is better)
Translates to: LHMREKNKPCYSVGQSTALYRDQ*ALITKR
Trigger: CCTCTTGGTTATCAGTGCTCACTGATCCCTATATAA...CGCAGTGCTCTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR GCA 90 bp ATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTTAAAAACATCTTGGGGAACTaGTTAGAAATGGGAACAGAT +
Preference number: 4 (lower is better)
Translates to: IVLARALRLTPQAGLPVKNILGN*LEMGTD
Trigger: ATCTGTTCCCATTTCTAAGCAGTTCCCCAAGATGTT...TTTAACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CCA 90 bp GGTTACCAGTTAAAGTCTCAGTGTGACTACTTGGACACCTATTTTTGTTTAGACTGGCACCTCTATCCCTaGCAGCAGCACTACCCCTCG +
Preference number: 4 (lower is better)
Translates to: GYQLKSQCDYLDTYFCLDWHLYP*QQHYPS
Trigger: CGAGGGGTAGTGCTGCTGCCAGGGATAGAGGTGCCA...GTCTAAACAAAAATAGGTGTCCAAGTAGTCACACTGAGACTTTAACTGGTAACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp GTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTTGGTTCTAGCCTTGATTAGAAGTCATGAGGTTTTCTaGGTGGCAGATCTGGCACCT +
Preference number: 4 (lower is better)
Translates to: VAQYWAILSLPLVLALIRSHEVF*VADLAP
Trigger: AGGTGCCAGATCTGCCACCCAGAAAACCTCATGACT...TCTAATCAAGGCTAGAACCAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp TGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAAAGTCATGAGGTTTTCTaGGTGGCAGATCTGGCACCT +
Preference number: 4 (lower is better)
Translates to: WEPEAWPLLINAWYLLCKSHEVF*VADLAP
Trigger: AGGTGCCAGATCTGCCACCCAGAAAACCTCATGACT...TTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp GAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAAAGATGTGGGCAGTTAGCCTaGACAGATGACACATGGCTC +
Preference number: 4 (lower is better)
Translates to: EPEAWPLLINAWYLLCKRCGQLA*TDDTWL
Trigger: GAGCCATGTGTCATCTGTCCAGGCTAACTGCCCACA...TCTTTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CCA 90 bp GCATGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTCCAAAGGTGCTAGCTTaGCTAGCACCAAGTAATCTT +
Preference number: 4 (lower is better)
Translates to: AWEPEAWPLLINAWYLLCPKVLA*LAPSNL
Trigger: AAGATTACTTGGTGCTAGCCAAGCTAGCACCTTTGG...ACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR TCA 90 bp TTTGTTTCACTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGAGGCAGATAATTGCTTaGACCCAGGAGGCAGAGGTT +
Preference number: 4 (lower is better)
Translates to: FVSLHMREKNKPCYSVGQRQIIA*TQEAEV
Trigger: AACCTCTGCCTCCTGGGTTCAAGCAATTATCTGCCT...CTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAGTGAAACAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR TCA 90 bp AAGTTCTTGATCCTTTATAAGGTTCAGGCTATCCAGTTTGGTAGAGTTAGAAGAACTGCCTCAGCCTCCTaGGTAGCTGGGACTACAGGC +
Preference number: 4 (lower is better)
Translates to: KFLILYKVQAIQFGRVRRTASAS*VAGTTG
Trigger: GCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGT...TCTTCTAACTCTACCAAACTGGATAGCCTGAACCTTATAAAGGATCAAGAACTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR TCA 90 bp TTGGGTAGGGCTTTCGTAGTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTTGTTGTTTCACTACACATaGGGGAGAAGAATAAGCCCT +
Preference number: 4 (lower is better)
Translates to: LGRAFVVAQYWAILSLPLLFHYT*GRRISP
Trigger: AGGGCTTATTCTTCTCCCTCATGTGTAGTGAAACAA...CAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAACTACGAAAGCCCTACCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR TCA 90 bp TTGGGTAGGGCTTTCGTAGTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTTGTATAGGGAATGGAACTaGATGAACCCAAGGTGTTAC +
Preference number: 4 (lower is better)
Translates to: LGRAFVVAQYWAILSLPLYREWN*MNPRCY
Trigger: GTAACACCTTGGGTTCATTCAGTTCCATTCCCTATA...CAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAACTACGAAAGCCCTACCCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR TCA 90 bp TGTAACAACATCTTGGGGAACTGCTTAGAAATGGGAACAGATAGAGTCTTGGCTGTTAGCCTGGACAGATaGCACATGGCTCAGCTGACA +
Preference number: 4 (lower is better)
Translates to: CNNILGNCLEMGTDRVLAVSLDR*HMAQLT
Trigger: TGTCAGCTGAGCCATGTGTCATCTGTCCAGGCTAAC...AGCCAAGACTCTATCTGTTCCCATTTCTAAGCAGTTCCCCAAGATGTTGTTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR TCA 90 bp ATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTTAAATTACTGAATGTAGGATaGTCTCACAGATGTATTAGG +
Preference number: 4 (lower is better)
Translates to: IVLARALRLTPQAGLPVKLLNVG*SHRCIR
Trigger: CCTAATACATCTGTGAGATCATCCTACATTCAGTAA...TTTAACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR GCA 90 bp TTTGTTTCACTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGGTGTCCTCGATCTTCTaGTTCAGCTCTGCGACTTTC +
Preference number: 4 (lower is better)
Translates to: FVSLHMREKNKPCYSVGQVSSIF*FSSATF
Trigger: GAAAGTCGCAGAGCTGAAGCAGAAGATCGAGGACAC...CTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAGTGAAACAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR GCA 90 bp GAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAAAGACAAATCGGGGGTGTATaGACACACCTGATATGCGCT +
Preference number: 4 (lower is better)
Translates to: EPEAWPLLINAWYLLCKRQIGGV*THLICA
Trigger: AGCGCATATCAGGTGTGTGCATACACCCCCGATTTG...TCTTTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR GCA 90 bp GTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTTGGTTCTAGCCTTGATTAGACACTATTCAAAGGGCTaGATGGGAACCAGAAGCTTG +
Preference number: 4 (lower is better)
Translates to: VAQYWAILSLPLVLALIRHYSKG*MGTRSL
Trigger: CAAGCTTCTGGTTCCCATGCAGCCCTTTGAATAGTG...TCTAATCAAGGCTAGAACCAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR GCA 90 bp TTGGGTAGGGCTTTCGTAGTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTTGGAAAATGAGGAGAGCTaGCTCCAAATCAGGGAATTA +
Preference number: 4 (lower is better)
Translates to: LGRAFVVAQYWAILSLPLENEES*LQIREL
Trigger: TAATTCCCTGATTTGGAGGCAGCTCTCCTCATTTTC...CAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAACTACGAAAGCCCTACCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR GCA 90 bp GCATGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTGAGGAATTTACTCCTTaGTTTCCCTGTTTTGGGGAA +
Preference number: 4 (lower is better)
Translates to: AWEPEAWPLLINAWYLLCEEFTP*FPCFGE
Trigger: TTCCCCAAAACAGGGAAAGCAAGGAGTAAATTCCTC...ACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR GCA 90 bp GAACTGAATGAACCCAAGGTGTTACATTTTGTTTCACTACACATGAGGGAGAAGGACTCTGTTGGTCTCTaGTGCTTCCCATCCCACTGG +
Preference number: 4 (lower is better)
Translates to: ELNEPKVLHFVSLHMREKDSVGL*CFPSHW
Trigger: CCAGTGGGATGGGAAGCAGCAGAGACCAACAGAGTC...CTTCTCCCTCATGTGTAGTGAAACAAAATGTAACACCTTGGGTTCATTCAGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CCA 90 bp CCATCCCACTGGAACATGTACAGCCTCTTAAATAGGTACCATTTAAGAGCCAATGAACAGATAGAGTCTTaGCTGGGTGCGGTGGCTCAT +
Preference number: 4 (lower is better)
Translates to: PSHWNMYSLLNRYHLRANEQIES*LGAVAH
Trigger: ATGAGCCACCGCACCCAGCCAAGACTCTATCTGTTC...ATTGGCTCTTAAATGGTACCTATTTAAGAGGCTGTACATGTTCCAGTGGGATGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CCA 90 bp GACACCTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATGGGAACCAGAAGCCTGAGTTGGCGTTGTaGGCAGGCTACTGGTTTGTA +
Preference number: 4 (lower is better)
Translates to: DTYFCLDTLFKGLHGNQKPELAL*AGYWFV
Trigger: TACAAACCAGTAGCCTGCCCACAACGCCAACTCAGG...CTTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAGGTGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CCA 90 bp ATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTTAAAGCAAAACAAAATGGTTaGGAATCACCTCTAGAGATA +
Preference number: 4 (lower is better)
Translates to: IVLARALRLTPQAGLPVKAKQNG*ESPLEI
Trigger: TATCTCTAGAGGTGATTCCCAACCATTTTGTTTTGC...TTTAACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR CAA 72 bp ACACCCATGAGCAGCAGTACAGAATTCCCAGGGCCTTaGGTAATGGCCAACATACTGCTTACTATATATGCC +
Preference number: 4 (lower is better)
Translates to: TPMSSSTEFPGP*VMANILLTIYA
Trigger: GGCATATATAGTAAGCAGTATGTTGGCCATTACCAAAGGCCCTGGGAATTCTGTACTGCTGCTCATGGGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR TCA 90 bp TGTAACAACATCTTGGGGAACTGCTTAGAAATGGGAACAGATAGAGTCTTGGCTAACCGACTACACCCATaGGCAGCAGTACAGAATTCC +
Preference number: 4 (lower is better)
Translates to: CNNILGNCLEMGTDRVLANRLHP*AAVQNS
Trigger: GGAATTCTGTACTGCTGCTCATGGGTGTAGTCGGTT...AGCCAAGACTCTATCTGTTCCCATTTCTAAGCAGTTCCCCAAGATGTTGTTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR TCA 90 bp TGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAACTTCTGTGTATCATGTaGTACCATTCCAGCCACTTG +
Preference number: 4 (lower is better)
Translates to: WEPEAWPLLINAWYLLCKLLCIM*YHSSHL
Trigger: CAAGTGGCTGGAATGGTATCACATGATACACAGAAG...TTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR GCA 90 bp GGACACCTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATGGGAACCAGAACAAATCGGGGGTGTATaGACACACCTGATATGCGCT +
Preference number: 4 (lower is better)
Translates to: GHLFLFRHTIQRAAWEPEQIGGV*THLICA
Trigger: AGCGCATATCAGGTGTGTGCATACACCCCCGATTTG...TTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAGGTGTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR GCA 90 bp GCATGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTATAGGAGAATGGTGGTaGATACCATTGAGAAGGTTA +
Preference number: 4 (lower is better)
Translates to: AWEPEAWPLLINAWYLLCIGEWW*IPLRRL
Trigger: TAACCTTCTCAATGGTATGCACCACCATTCTCCTAT...ACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCATGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CCA 90 bp AAGTTCTTGATCCTTTATAAGGTTCAGGCTATCCAGTTTGGTAGAGTTAGAAGAGCACTACCCCTCGGATaGCAAACCAGCCCCCAAATC +
Preference number: 4 (lower is better)
Translates to: KFLILYKVQAIQFGRVRRALPLG*QTSPQI
Trigger: GATTTGGGGGCTGGTTTGCCATCCGAGGGGTAGTGC...TCTTCTAACTCTACCAAACTGGATAGCCTGAACCTTATAAAGGATCAAGAACTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CCA 90 bp TTTGTTTCACTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGTCATTTGAAGGCAGATaGGAATTCTGGTTCCCTGGC +
Preference number: 4 (lower is better)
Translates to: FVSLHMREKNKPCYSVGQSFEGR*EFWFPG
Trigger: GCCAGGGAACCAGAATTCCCATCTGCCTTCAAATGA...CTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAGTGAAACAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CCA 90 bp GGACACCTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATGGGAACCAGAACTGTATTGGCCAGGCTaGTCTCAAACTCGACCTCAT +
Preference number: 4 (lower is better)
Translates to: GHLFLFRHTIQRAAWEPELYWPG*SQTRPH
Trigger: ATGAGGTCGAGTTTGAGACCAGCCTGGCCAATACAG...TTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAGGTGTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CCA 90 bp TTTGTTTCACTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGAGAGAGGCTGTCAGCTaGGAAAAGTTATTCTCCTGG +
Preference number: 4 (lower is better)
Translates to: FVSLHMREKNKPCYSVGQREAVS*EKLFSW
Trigger: CCAGGAGAATAACTTTTCCCAGCTGACAGCCTCTCT...CTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAGTGAAACAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CCA 90 bp GAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAAAGATGGGAACCAGAAGCTTaGCCTCTTCTGATAAATGCC +
Preference number: 4 (lower is better)
Translates to: EPEAWPLLINAWYLLCKRWEPEA*PLLINA
Trigger: GGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCA...TCTTTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp GAACTGAATGAACCCAAGGTGTTACATTTTGTTTCACTACACATGAGGGAGAAGGAGACTGCCCCCTTGTaGGAGATGAGGTTCAGCATT +
Preference number: 4 (lower is better)
Translates to: ELNEPKVLHFVSLHMREKETAPL*EMRFSI
Trigger: AATGCTGAACCTCATCTCCCACAAGGGGGCAGTCTC...CTTCTCCCTCATGTGTAGTGAAACAAAATGTAACACCTTGGGTTCATTCAGTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR CAA 72 bp AGAGGATATTTGCCCCTTAGGCCCTGTAACAACATCTaGGGGAACTGCTTAGAAATGGGAACAGATAGAGTC +
Preference number: 4 (lower is better)
Translates to: RGYLPLRPCNNI*GNCLEMGTDRV
Trigger: GACTCTATCTGTTCCCATTTCTAAGCAGTTCCCCAAGATGTTGTTACAGGGCCTAAGGGGCAAATATCCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR TCA 90 bp GACACCTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATGGGAACCAGAAGCCTCGTAGTCAGCAATaGTTTCTATCTGCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: DTYFCLDTLFKGLHGNQKPRSQQ*FLSAAL
Trigger: CAGAGCTGCAGATAGAAATCATTGCTGACTACGAGG...CTTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAGGTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR TCA 90 bp GTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTTGGTTCTAGCCTTGATTAGAGGCCAAAGCTCGTTTTaGTCCTCATTCATATGTCAT +
Preference number: 4 (lower is better)
Translates to: VAQYWAILSLPLVLALIRGQSSF*SSFICH
Trigger: ATGACATATGAATGAGGATCAAAACGAGCTTTGGCC...TCTAATCAAGGCTAGAACCAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR TCA 90 bp TGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAAGGGAATGGAACTGAATaGACCCAAGGTGTTACATTT +
Preference number: 4 (lower is better)
Translates to: WEPEAWPLLINAWYLLCKGNGTE*TQGVTF
Trigger: AAATGTAACACCTTGGGTTCATTCAGTTCCATTCCC...TTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR TCA 90 bp TTGGGTAGGGCTTTCGTAGTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTTGCTTCTGTTAAGTTCTTaGTCCTTTATAAGGTTCAGG +
Preference number: 4 (lower is better)
Translates to: LGRAFVVAQYWAILSLPLLLLSS*SFIRFR
Trigger: CCTGAACCTTATAAAGGATCAAGAACTTAACAGAAG...CAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAACTACGAAAGCCCTACCCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR TCA 90 bp GTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTTGGTTCTAGCCTTGATTAGATATAGGTTAGTCTCCTaGACCCAGGCTTTCATAACT +
Preference number: 4 (lower is better)
Translates to: VAQYWAILSLPLVLALIRYRLVS*TQAFIT
Trigger: AGTTATGAAAGCCTGGGTTCAGGAGACTAACCTATA...TCTAATCAAGGCTAGAACCAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR GCA 90 bp GGTTACCAGTTAAAGTCTCAGTGTGACTACTTGGACACCTATTTTTGTTTAGACCTTCTGCTTCAGCTCTaGGACTTTCGGCTCCATAGC +
Preference number: 4 (lower is better)
Translates to: GYQLKSQCDYLDTYFCLDLLLQL*DFRLHS
Trigger: GCTATGGAGCCGAAAGTCGCAGAGCTGAAGCAGAAG...GTCTAAACAAAAATAGGTGTCCAAGTAGTCACACTGAGACTTTAACTGGTAACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR GCA 90 bp CCATCCCACTGGAACATGTACAGCCTCTTAAATAGGTACCATTTAAGAGCCAATGAGTTCATTGTACCATaGCACCTGGAAGGGGTAAAC +
Preference number: 4 (lower is better)
Translates to: PSHWNMYSLLNRYHLRANEFIVP*HLEGVN
Trigger: GTTTACCCCTTCCAGGTGGCATGGTACAATGAACTC...ATTGGCTCTTAAATGGTACCTATTTAAGAGGCTGTACATGTTCCAGTGGGATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR GCA 90 bp AAGTTCTTGATCCTTTATAAGGTTCAGGCTATCCAGTTTGGTAGAGTTAGAAGATCACCCAGGCTAGAGTaGAGCCATGCAATCTCGGCT +
Preference number: 4 (lower is better)
Translates to: KFLILYKVQAIQFGRVRRSPRLE*SHAISA
Trigger: AGCCGAGATTGCATGGCTGCACTCTAGCCTGGGTGA...TCTTCTAACTCTACCAAACTGGATAGCCTGAACCTTATAAAGGATCAAGAACTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR GCA 90 bp TGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAAGAAAATGAGGAGAGCTaGCTCCAAATCAGGGAATTA +
Preference number: 4 (lower is better)
Translates to: WEPEAWPLLINAWYLLCKENEES*LQIREL
Trigger: TAATTCCCTGATTTGGAGGCAGCTCTCCTCATTTTC...TTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR GCA 90 bp GTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTTGGTTCTAGCCTTGATTAGAGAGGAATTTACTCCTTaGTTTCCCTGTTTTGGGGAA +
Preference number: 4 (lower is better)
Translates to: VAQYWAILSLPLVLALIREEFTP*FPCFGE
Trigger: TTCCCCAAAACAGGGAAAGCAAGGAGTAAATTCCTC...TCTAATCAAGGCTAGAACCAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR GCA 90 bp TGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAACATAACTCAGAAGCTTaGTTCTTCAGACTCTGTTGG +
Preference number: 4 (lower is better)
Translates to: WEPEAWPLLINAWYLLCKHNSEA*FFRLCW
Trigger: CCAACAGAGTCTGAAGAAGCAAGCTTCTGAGTTATG...TTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CCA 90 bp GGACACCTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATGGGAACCAGAAATGAGGTTTTCTGGGTaGCAGATCTGGCACCTCTAT +
Preference number: 4 (lower is better)
Translates to: GHLFLFRHTIQRAAWEPEMRFSG*QIWHLY
Trigger: ATAGAGGTGCCAGATCTGCCACCCAGAAAACCTCAT...TTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAGGTGTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp GGTTACCAGTTAAAGTCTCAGTGTGACTACTTGGACACCTATTTTTGTTTAGACAATAGGGCCAATCGTTaGGCAGGTGGAGTGGAGAAG +
Preference number: 4 (lower is better)
Translates to: GYQLKSQCDYLDTYFCLDNRANR*AGGVEK
Trigger: CTTCTCCACTCCACCTGCCCAACGATTGGCCCTATT...GTCTAAACAAAAATAGGTGTCCAAGTAGTCACACTGAGACTTTAACTGGTAACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp GGACACCTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATGGGAACCAGAAGGCAGATGGGAATTCTaGTTCCCTGGCCTTTATCTT +
Preference number: 4 (lower is better)
Translates to: GHLFLFRHTIQRAAWEPEGRWEF*FPGLYL
Trigger: AAGATAAAGGCCAGGGAACCAGAATTCCCATCTGCC...TTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAGGTGTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CCA 90 bp GACACCTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATGGGAACCAGAAGGTAGTTGCACAGTACTaGGCAATTCTTAGCCTTCCC +
Preference number: 4 (lower is better)
Translates to: DTYFCLDTLFKGLHGNQKVVAQY*AILSLP
Trigger: GGGAAGGCTAAGAATTGCCCAGTACTGTGCAACTAC...CTTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAGGTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp TGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAATTAGTGGTGTATGTTTaGGAAGACCCAAAGGTGCTA +
Preference number: 4 (lower is better)
Translates to: WEPEAWPLLINAWYLLCKLVVYV*EDPKVL
Trigger: TAGCACCTTTGGGTCTTCCCAAACATACACCACTAA...TTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR CAA 72 bp AATGAAGTTATTAGAGTCTGGATTAGTGGTGTATGTTaGGGAAGACCCAAAGGTGCTAGCTTGGCTAGCACC +
Preference number: 4 (lower is better)
Translates to: NEVIRVWISGVC*GRPKGASLAST
Trigger: GGTGCTAGCCAAGCTAGCACCTTTGGGTCTTCCCAAACATACACCACTAATCCAGACTCTAATAACTTCATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR TCA 90 bp GAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAAAGAGGGAATGGAACTGAATaGACCCAAGGTGTTACATTT +
Preference number: 4 (lower is better)
Translates to: EPEAWPLLINAWYLLCKRGNGTE*TQGVTF
Trigger: AAATGTAACACCTTGGGTTCATTCAGTTCCATTCCC...TCTTTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR TCA 90 bp CCATCCCACTGGAACATGTACAGCCTCTTAAATAGGTACCATTTAAGAGCCAATGAGTTAGAAGAATGCTaGGAAGGCAGACTGAGTTTG +
Preference number: 4 (lower is better)
Translates to: PSHWNMYSLLNRYHLRANELEEC*EGRLSL
Trigger: CAAACTCAGTCTGCCTTCTCAGCATTCTTCTAACTC...ATTGGCTCTTAAATGGTACCTATTTAAGAGGCTGTACATGTTCCAGTGGGATGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR GCA 90 bp GAACTGAATGAACCCAAGGTGTTACATTTTGTTTCACTACACATGAGGGAGAAGGCTCACTGCAATCTCTaGCTCCCTGGTTCAAATGAT +
Preference number: 4 (lower is better)
Translates to: ELNEPKVLHFVSLHMREKAHCNL*LPGSND
Trigger: ATCATTTGAACCAGGGAGGCAGAGATTGCAGTGAGC...CTTCTCCCTCATGTGTAGTGAAACAAAATGTAACACCTTGGGTTCATTCAGTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR GCA 90 bp TTGGGTAGGGCTTTCGTAGTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTTGGGTATTTTTCCAAAGTaGCTTACACGTGTTTATTCA +
Preference number: 4 (lower is better)
Translates to: LGRAFVVAQYWAILSLPLGIFPK*LTRVYS
Trigger: TGAATAAACACGTGTAAGGCACTTTGGAAAAATACC...CAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAACTACGAAAGCCCTACCCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR GCA 90 bp AAGTTCTTGATCCTTTATAAGGTTCAGGCTATCCAGTTTGGTAGAGTTAGAAGATCTGTTGGTCTCTGCTaGTTCCCATCCCACTGGAAC +
Preference number: 4 (lower is better)
Translates to: KFLILYKVQAIQFGRVRRSVGLC*FPSHWN
Trigger: GTTCCAGTGGGATGGGAAGCAGCAGAGACCAACAGA...TCTTCTAACTCTACCAAACTGGATAGCCTGAACCTTATAAAGGATCAAGAACTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CCA 90 bp GAACTGAATGAACCCAAGGTGTTACATTTTGTTTCACTACACATGAGGGAGAAGATGAGGTTTTCTGGGTaGCAGATCTGGCACCTCTAT +
Preference number: 4 (lower is better)
Translates to: ELNEPKVLHFVSLHMREKMRFSG*QIWHLY
Trigger: ATAGAGGTGCCAGATCTGCCACCCAGAAAACCTCAT...CTTCTCCCTCATGTGTAGTGAAACAAAATGTAACACCTTGGGTTCATTCAGTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp GAACTGAATGAACCCAAGGTGTTACATTTTGTTTCACTACACATGAGGGAGAAGTGGGAACCAGAAGCTTaGCCTCTTCTGATAAATGCC +
Preference number: 4 (lower is better)
Translates to: ELNEPKVLHFVSLHMREKWEPEA*PLLINA
Trigger: GGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCA...CTTCTCCCTCATGTGTAGTGAAACAAAATGTAACACCTTGGGTTCATTCAGTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CCA 90 bp TGTAACAACATCTTGGGGAACTGCTTAGAAATGGGAACAGATAGAGTCTTGGCTTCCATAGGAGAATGGTaGTGCATACCATTGAGAAGG +
Preference number: 4 (lower is better)
Translates to: CNNILGNCLEMGTDRVLASIGEW*CIPLRR
Trigger: CCTTCTCAATGGTATGCACCACCATTCTCCTATGGA...AGCCAAGACTCTATCTGTTCCCATTTCTAAGCAGTTCCCCAAGATGTTGTTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CCA 90 bp TGTAACAACATCTTGGGGAACTGCTTAGAAATGGGAACAGATAGAGTCTTGGCTAGTAGGCCCTTTAACTaGACTTTCCTAGGAACCTAC +
Preference number: 4 (lower is better)
Translates to: CNNILGNCLEMGTDRVLASRPFN*TFLGTY
Trigger: GTAGGTTCCTAGGAAAGTCCAGTTAAAGGGCCTACT...AGCCAAGACTCTATCTGTTCCCATTTCTAAGCAGTTCCCCAAGATGTTGTTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR CAA 72 bp GTAGTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTaGGTTCTAGCCTTGATTAGAGATAGTCTTGTTATC +
Preference number: 4 (lower is better)
Translates to: VVAQYWAILSLP*VLALIRDSLVI
Trigger: GATAACAAGACTATCTCTAATCAAGGCTAGAACCAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAACTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616135.1
CDS-3UTR TCA 90 bp GACACCTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATGGGAACCAGAAGTTGTTTCACTACACATaGGGGAGAAGAATAAGCCCT +
Preference number: 4 (lower is better)
Translates to: DTYFCLDTLFKGLHGNQKLFHYT*GRRISP
Trigger: AGGGCTTATTCTTCTCCCTCATGTGTAGTGAAACAA...CTTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAGGTGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR TCA 90 bp AAGTTCTTGATCCTTTATAAGGTTCAGGCTATCCAGTTTGGTAGAGTTAGAAGACTGTCTTCAGAGCTCTaGAGGGCTGTCAGAAACAGT +
Preference number: 4 (lower is better)
Translates to: KFLILYKVQAIQFGRVRRLSSEL*RAVRNS
Trigger: ACTGTTTCTGACAGCCCTTCAGAGCTCTGAAGACAG...TCTTCTAACTCTACCAAACTGGATAGCCTGAACCTTATAAAGGATCAAGAACTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR TCA 90 bp TGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAAGGCCTATTTCAGCTCTaGTCTTGTAATTTAAAGGAA +
Preference number: 4 (lower is better)
Translates to: WEPEAWPLLINAWYLLCKGLFQL*SCNLKE
Trigger: TTCCTTTAAATTACAAGATCAGAGCTGAAATAGGCC...TTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CCA 90 bp GACACCTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATGGGAACCAGAAGTTGTCCATAGGAGAATaGTGGTGCATACCATTGAGA +
Preference number: 4 (lower is better)
Translates to: DTYFCLDTLFKGLHGNQKLSIGE*WCIPLR
Trigger: TCTCAATGGTATGCACCACCATTCTCCTATGGACAA...CTTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAGGTGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR TCA 90 bp GAACTGAATGAACCCAAGGTGTTACATTTTGTTTCACTACACATGAGGGAGAAGTTGTCAGGAAAAGGTTaGAGGCTGTGCTTTCTGTAT +
Preference number: 4 (lower is better)
Translates to: ELNEPKVLHFVSLHMREKLSGKG*RLCFLY
Trigger: ATACAGAAAGCACAGCCTTCAACCTTTTCCTGACAA...CTTCTCCCTCATGTGTAGTGAAACAAAATGTAACACCTTGGGTTCATTCAGTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR GCA 90 bp TTTGTTTCACTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGCAAAACCTTTTGCTTTaGCAAAGCCAATTAAGTCCT +
Preference number: 4 (lower is better)
Translates to: FVSLHMREKNKPCYSVGQQNLLL*QSQLSP
Trigger: AGGACTTAATTGGCTTTGGCAAAGCAAAAGGTTTTG...CTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAGTGAAACAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR GCA 90 bp GAACTGAATGAACCCAAGGTGTTACATTTTGTTTCACTACACATGAGGGAGAAGTCTTTAGAGGATATTTaGCCCTTAGGCCCTGTAACA +
Preference number: 4 (lower is better)
Translates to: ELNEPKVLHFVSLHMREKSLEDI*PLGPVT
Trigger: TGTTACAGGGCCTAAGGGGCAAATATCCTCTAAAGA...CTTCTCCCTCATGTGTAGTGAAACAAAATGTAACACCTTGGGTTCATTCAGTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CCA 90 bp AAGTTCTTGATCCTTTATAAGGTTCAGGCTATCCAGTTTGGTAGAGTTAGAAGAAAATCAGGGTCCACATaGGAGAAAATCAAGGGCCAG +
Preference number: 4 (lower is better)
Translates to: KFLILYKVQAIQFGRVRRKSGST*EKIKGQ
Trigger: CTGGCCCTTGATTTTCTCCCATGTGGACCCTGATTT...TCTTCTAACTCTACCAAACTGGATAGCCTGAACCTTATAAAGGATCAAGAACTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CCA 90 bp AAGTTCTTGATCCTTTATAAGGTTCAGGCTATCCAGTTTGGTAGAGTTAGAAGATGCTTCCCATCCCACTaGAACATGTACAGCCTCTTA +
Preference number: 4 (lower is better)
Translates to: KFLILYKVQAIQFGRVRRCFPSH*NMYSLL
Trigger: TAAGAGGCTGTACATGTTCCAGTGGGATGGGAAGCA...TCTTCTAACTCTACCAAACTGGATAGCCTGAACCTTATAAAGGATCAAGAACTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CCA 90 bp TTTGTTTCACTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGGAAGTTATTAGAGTCTaGATTAGTGGTGTATGTTTG +
Preference number: 4 (lower is better)
Translates to: FVSLHMREKNKPCYSVGQEVIRV*ISGVCL
Trigger: CAAACATACACCACTAATCCAGACTCTAATAACTTC...CTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAGTGAAACAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
3UTR CAA 72 bp TACTGGGCAATTCTTAGCCTTCCCTTGGTTCTAGCCTaGATTAGAGATAGTCTTGTTATCTTCATGGAAGAT +
Preference number: 4 (lower is better)
Translates to: YWAILSLPLVLA*IRDSLVIFMED
Trigger: ATCTTCCATGAAGATAACAAGACTATCTCTAATCAAGGCTAGAACCAAGGGAAGGCTAAGAATTGCCCAGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000616135.1
CDS-3UTR GCA 90 bp GAACTGAATGAACCCAAGGTGTTACATTTTGTTTCACTACACATGAGGGAGAAGCAAAACCTTTTGCTTTaGCAAAGCCAATTAAGTCCT +
Preference number: 4 (lower is better)
Translates to: ELNEPKVLHFVSLHMREKQNLLL*QSQLSP
Trigger: AGGACTTAATTGGCTTTGGCAAAGCAAAAGGTTTTG...CTTCTCCCTCATGTGTAGTGAAACAAAATGTAACACCTTGGGTTCATTCAGTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
3UTR CAA 72 bp AGGCTGGGTTACCAGTTAAAGTCTCAGTGTGACTACTaGGACACCTATTTTTGTTTAGACACACTATTCAAA +
Preference number: 4 (lower is better)
Translates to: RLGYQLKSQCDY*DTYFCLDTLFK
Trigger: TTTGAATAGTGTGTCTAAACAAAAATAGGTGTCCAAGTAGTCACACTGAGACTTTAACTGGTAACCCAGCCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS GCA 90 bp ACACACTGGTCCACTGGGTCAGTCAGCATTCGGAGGTGGCAGCTCTaGAAGAAGGGCTTGAGGGCCCGGTCAAACATGGCAGGCGTGCTG +
Preference number: 5 (lower is better)
Translates to: THWSTGSVSIRRWQL*KKGLRARSNMAGVL
Trigger: CAGCACGCCTGCCATGTTTGACCGGGCCCTCAAGCCCTTCTTGCAGAGCTGCCACCTCCGAATGCTGACTGACCCAGTGGACCAGTGTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS CCA 90 bp GCTCTCTCTAACACGGCCCAGATGGTAGGCCACACACTGGTCCACTaGGTCAGTCAGCATTCGGAGGTGGCAGCTCTGCAAGAAGGGCTT +
Preference number: 5 (lower is better)
Translates to: ALSNTAQMVGHTLVH*VSQHSEVAALQEGL
Trigger: AAGCCCTTCTTGCAGAGCTGCCACCTCCGAATGCTGACTGACCCAGTGGACCAGTGTGTGGCCTACCATCTGGGCCGTGTTAGAGAGAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp GCCCACCCCTCTAGAACCGACTACACCCATGAGCAGCAGTACAGAATTCCCAGGGGATTCCCAGGCTTCTaGGGGGCGGGTGTGGTAAAG +
Preference number: 5 (lower is better)
Translates to: AHPSRTDYTHEQQYRIPRGFPGF*GAGVVK
Trigger: CTTTACCACACCCGCCCCCAAGAAGCCTGGGAATCC...CCTGGGAATTCTGTACTGCTGCTCATGGGTGTAGTCGGTTCTAGAGGGGTGGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CAA 90 bp GCCCACCCCTCTAGAACCGACTACACCCATGAGCAGCAGTACAGAATTCCCAGGGTGGTTCTGAATTCCTaGCCTCAGGCGGTCCTCCGC +
Preference number: 5 (lower is better)
Translates to: AHPSRTDYTHEQQYRIPRVVLNS*PQAVLR
Trigger: GCGGAGGACCGCCTGAGGCAAGGAATTCAGAACCAC...CCTGGGAATTCTGTACTGCTGCTCATGGGTGTAGTCGGTTCTAGAGGGGTGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CAA 90 bp TGCTATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTTGGCCTGAGTTGGCGTaGTGGGCAGGCTACTGGTTT +
Preference number: 5 (lower is better)
Translates to: CYSVGQSTATDATGWVTSWPELA*WAGYWF
Trigger: AAACCAGTAGCCTGCCCACAACGCCAACTCAGGCCA...ACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTATAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS TCA 90 bp CCTTCGAGTAGGGCGATACGGTCAGCTCTTGTAGGTACACAGTCATaGGGTTTTCTGGGTGGCAGATCTGGCACCTCTATCCCTGGCAGC +
Preference number: 5 (lower is better)
Translates to: PSSRAIRSALVGTQS*GFLGGRSGTSIPGS
Trigger: GCTGCCAGGGATAGAGGTGCCAGATCTGCCACCCAGAAAACCTCATGACTGTGTACCTACAAGAGCTGACCGTATCGCCCTACTCGAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS CCA 90 bp GATACGGTCAGCTCTTGTAGGTACACAGTCATGAGGTTTTCTGGGTaGCAGATCTGGCACCTCTATCCCTGGCAGCAGCACTACCCCTCG +
Preference number: 5 (lower is better)
Translates to: DTVSSCRYTVMRFSG*QIWHLYPWQQHYPS
Trigger: CGAGGGGTAGTGCTGCTGCCAGGGATAGAGGTGCCAGATCTGCCACCCAGAAAACCTCATGACTGTGTACCTACAAGAGCTGACCGTATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp TGCTATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTGGAGGCAAGAGTTCATaGTACCATGCCACCTGGAAG +
Preference number: 5 (lower is better)
Translates to: CYSVGQSTATDATGWVTSGGKSS*YHATWK
Trigger: CTTCCAGGTGGCATGGTACAATGAACTCTTGCCTCC...ACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTATAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS CCA 90 bp AGCTCTTGTAGGTACACAGTCATGAGGTTTTCTGGGTGGCAGATCTaGCACCTCTATCCCTGGCAGCAGCACTACCCCTCGGATGGCAAA +
Preference number: 5 (lower is better)
Translates to: SSCRYTVMRFSGWQI*HLYPWQQHYPSDGK
Trigger: TTTGCCATCCGAGGGGTAGTGCTGCTGCCAGGGATAGAGGTGCCAGATCTGCCACCCAGAAAACCTCATGACTGTGTACCTACAAGAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp CTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGAGCACTGCGCTCTGCAAGAAGGGCTaGAGGGCCCGGTCAAACATG +
Preference number: 5 (lower is better)
Translates to: LHMREKNKPCYSVGQSTALCKKG*RARSNM
Trigger: CATGTTTGACCGGGCCCTCAAGCCCTTCTTGCAGAG...CGCAGTGCTCTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp TGCTATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTGTCAGCCTCCACATCTaGTCGTTGGTAGTAGTAAGC +
Preference number: 5 (lower is better)
Translates to: CYSVGQSTATDATGWVTSVSLHI*SLVVVS
Trigger: GCTTACTACTACCAACGACAAGATGTGGAGGCTGAC...ACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTATAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp GACACCTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATGGGAACCAGAAGGTCTGGGCCAGGATCTaGGGGCGTCGGTTGGGGTGC +
Preference number: 5 (lower is better)
Translates to: DTYFCLDTLFKGLHGNQKVWARI*GRRLGC
Trigger: GCACCCCAACCGACGCCCCAAGATCCTGGCCCAGAC...CTTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAGGTGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp CTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGAGCACTGCGTCACGCCAGTGGAAATaGAAGCCTTCGAGTAGGGCG +
Preference number: 5 (lower is better)
Translates to: LHMREKNKPCYSVGQSTASRQWK*KPSSRA
Trigger: CGCCCTACTCGAAGGCTTCAATTTCCACTGGCGTGA...CGCAGTGCTCTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp TGCTATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTTCCCTGGCCTTTATCTaGGCCAAACCTAACTTCCTT +
Preference number: 5 (lower is better)
Translates to: CYSVGQSTATDATGWVTSSLAFI*AKPNFL
Trigger: AAGGAAGTTAGGTTTGGCCAAGATAAAGGCCAGGGA...ACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTATAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CAA 90 bp GCATGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTATGCAGGAGAATCGCTaGAACCCGGGAGACCGAGGT +
Preference number: 5 (lower is better)
Translates to: AWEPEAWPLLINAWYLLCMQENR*NPGDRG
Trigger: ACCTCGGTCTCCCGGGTTCAAGCGATTCTCCTGCAT...ACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCATGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CAA 90 bp GGACACCTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATGGGAACCAGAAGCCTCCCCTGAGCCATaGCGCCCAGCCCAGACTAGC +
Preference number: 5 (lower is better)
Translates to: GHLFLFRHTIQRAAWEPEASPEP*RPAQTS
Trigger: GCTAGTCTGGGCTGGGCGCAATGGCTCAGGGGAGGC...TTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAGGTGTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CAA 90 bp GCATGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTTCACGCCAGTGGAAATaGAAGCCTTCGAGTAGGGCG +
Preference number: 5 (lower is better)
Translates to: AWEPEAWPLLINAWYLLCSRQWK*KPSSRA
Trigger: CGCCCTACTCGAAGGCTTCAATTTCCACTGGCGTGA...ACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp TGCTATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTCTCATTCATATGTCATaGTCCTCAGAGAGGCTGTCA +
Preference number: 5 (lower is better)
Translates to: CYSVGQSTATDATGWVTSLIHMS*SSERLS
Trigger: TGACAGCCTCTCTGAGGACAATGACATATGAATGAG...ACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTATAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CAA 90 bp TGCTATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTAAGAGATTAGTCCCCTaGCCTCATTTTCTTCAGGCT +
Preference number: 5 (lower is better)
Translates to: CYSVGQSTATDATGWVTSKRLVP*PHFLQA
Trigger: AGCCTGAAGAAAATGAGGCAAGGGGACTAATCTCTT...ACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTATAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CAA 90 bp TTTGTTTCACTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGGGATTCCCAGGCTTCTaGGGGGCGGGTGTGGTAAAG +
Preference number: 5 (lower is better)
Translates to: FVSLHMREKNKPCYSVGQGFPGF*GAGVVK
Trigger: CTTTACCACACCCGCCCCCAAGAAGCCTGGGAATCC...CTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAGTGAAACAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp GTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTTGGTTCTAGCCTTGATTAGAGGAACAGATAGAGTCTaGGCTGGGTGCGGTGGCTCA +
Preference number: 5 (lower is better)
Translates to: VAQYWAILSLPLVLALIRGTDRV*AGCGGS
Trigger: TGAGCCACCGCACCCAGCCAAGACTCTATCTGTTCC...TCTAATCAAGGCTAGAACCAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CAA 90 bp TGCTATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTTCAAAACCTTTTGCTTaGCCAAAGCCAATTAAGTCC +
Preference number: 5 (lower is better)
Translates to: CYSVGQSTATDATGWVTSSKPFA*PKPIKS
Trigger: GGACTTAATTGGCTTTGGCAAAGCAAAAGGTTTTGA...ACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTATAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp TGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAAACAAGGCTGGTGGCCTaGGGTAGGGCTTTCGTAGTT +
Preference number: 5 (lower is better)
Translates to: WEPEAWPLLINAWYLLCKTRLVA*GRAFVV
Trigger: AACTACGAAAGCCCTACCCAAGGCCACCAGCCTTGT...TTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp TGTAACAACATCTTGGGGAACTGCTTAGAAATGGGAACAGATAGAGTCTTGGCTGCTGAGACTGCCCCCTaGTGGGAGATGAGGTTCAGC +
Preference number: 5 (lower is better)
Translates to: CNNILGNCLEMGTDRVLAAETAP*WEMRFS
Trigger: GCTGAACCTCATCTCCCACAAGGGGGCAGTCTCAGC...AGCCAAGACTCTATCTGTTCCCATTTCTAAGCAGTTCCCCAAGATGTTGTTACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CAA 90 bp GGACACCTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATGGGAACCAGAACTCTGCAAGAAGGGCTaGAGGGCCCGGTCAAACATG +
Preference number: 5 (lower is better)
Translates to: GHLFLFRHTIQRAAWEPELCKKG*RARSNM
Trigger: CATGTTTGACCGGGCCCTCAAGCCCTTCTTGCAGAG...TTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAGGTGTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp GACACCTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATGGGAACCAGAAGAGCCCTGCTATAGTGTaGGCCAGAGCACTGCGACTG +
Preference number: 5 (lower is better)
Translates to: DTYFCLDTLFKGLHGNQKSPAIV*ARALRL
Trigger: CAGTCGCAGTGCTCTGGCCAACACTATAGCAGGGCT...CTTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAGGTGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp CTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGAGCACTGCGAGAGGAATTTACTCCTaGCTTTCCCTGTTTTGGGGA +
Preference number: 5 (lower is better)
Translates to: LHMREKNKPCYSVGQSTARGIYS*LSLFWG
Trigger: TCCCCAAAACAGGGAAAGCAAGGAGTAAATTCCTCT...CGCAGTGCTCTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp TTTGTTTCACTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGGGAGGCAAGAGTTCATaGTACCATGCCACCTGGAAG +
Preference number: 5 (lower is better)
Translates to: FVSLHMREKNKPCYSVGQGGKSS*YHATWK
Trigger: CTTCCAGGTGGCATGGTACAATGAACTCTTGCCTCC...CTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAGTGAAACAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp CTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGAGCACTGCGATTCTTAGCCTTCCCTaGGTTCTAGCCTTGATTAGA +
Preference number: 5 (lower is better)
Translates to: LHMREKNKPCYSVGQSTAILSLP*VLALIR
Trigger: TCTAATCAAGGCTAGAACCAAGGGAAGGCTAAGAAT...CGCAGTGCTCTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp CCATCCCACTGGAACATGTACAGCCTCTTAAATAGGTACCATTTAAGAGCCAATACAAGGCTGGTGGCCTaGGGTAGGGCTTTCGTAGTT +
Preference number: 5 (lower is better)
Translates to: PSHWNMYSLLNRYHLRANTRLVA*GRAFVV
Trigger: AACTACGAAAGCCCTACCCAAGGCCACCAGCCTTGT...ATTGGCTCTTAAATGGTACCTATTTAAGAGGCTGTACATGTTCCAGTGGGATGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CAA 90 bp GTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTTGGTTCTAGCCTTGATTAGACTTCTTCAGACTCTGTaGGTCTCTGCTGCTTCCCAT +
Preference number: 5 (lower is better)
Translates to: VAQYWAILSLPLVLALIRLLQTL*VSAASH
Trigger: ATGGGAAGCAGCAGAGACCAACAGAGTCTGAAGAAG...TCTAATCAAGGCTAGAACCAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CAA 90 bp CCATCCCACTGGAACATGTACAGCCTCTTAAATAGGTACCATTTAAGAGCCAATCTCCACATCTTGTCGTaGGTAGTAGTAAGCAGCCCC +
Preference number: 5 (lower is better)
Translates to: PSHWNMYSLLNRYHLRANLHILS*VVVSSP
Trigger: GGGGCTGCTTACTACTACCAACGACAAGATGTGGAG...ATTGGCTCTTAAATGGTACCTATTTAAGAGGCTGTACATGTTCCAGTGGGATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CAA 90 bp GAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAAAGAGTCAGCCTCCACATCTaGTCGTTGGTAGTAGTAAGC +
Preference number: 5 (lower is better)
Translates to: EPEAWPLLINAWYLLCKRVSLHI*SLVVVS
Trigger: GCTTACTACTACCAACGACAAGATGTGGAGGCTGAC...TCTTTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp ATAGTGTTGGCCAGAGCACTGCGACTGACGCCACAGGCTGGGTTACCAGTTAAATGTACTCAAAACCTTTaGCTTTGCCAAAGCCAATTA +
Preference number: 5 (lower is better)
Translates to: IVLARALRLTPQAGLPVKCTQNL*LCQSQL
Trigger: TAATTGGCTTTGGCAAAGCAAAAGGTTTTGAGTACA...TTTAACTGGTAACCCAGCCTGTGGCGTCAGTCGCAGTGCTCTGGCCAACACTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp GACACCTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATGGGAACCAGAAGGAGGCAGATAATTGCTaGAACCCAGGAGGCAGAGGT +
Preference number: 5 (lower is better)
Translates to: DTYFCLDTLFKGLHGNQKEADNC*NPGGRG
Trigger: ACCTCTGCCTCCTGGGTTCAAGCAATTATCTGCCTC...CTTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAGGTGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CAA 90 bp CCATCCCACTGGAACATGTACAGCCTCTTAAATAGGTACCATTTAAGAGCCAATTACCATTCCAGCCACTaGTCTTCCTCAGCTACTCCC +
Preference number: 5 (lower is better)
Translates to: PSHWNMYSLLNRYHLRANYHSSH*SSSATP
Trigger: GGGAGTAGCTGAGGAAGACAAGTGGCTGGAATGGTA...ATTGGCTCTTAAATGGTACCTATTTAAGAGGCTGTACATGTTCCAGTGGGATGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CAA 90 bp CTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGAGCACTGCGCCCTTGGTTCTAGCCTaGATTAGAGATAGTCTTTTT +
Preference number: 5 (lower is better)
Translates to: LHMREKNKPCYSVGQSTAPLVLA*IRDSLF
Trigger: AAAAAGACTATCTCTAATCAAGGCTAGAACCAAGGG...CGCAGTGCTCTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CAA 90 bp GTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTTGGTTCTAGCCTTGATTAGAATGGGAACCAGAAGCTaGGCCTCTTCTGATAAATGC +
Preference number: 5 (lower is better)
Translates to: VAQYWAILSLPLVLALIRMGTRS*ASSDKC
Trigger: GCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCAT...TCTAATCAAGGCTAGAACCAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp TGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAAATGGGAACCAGAAGCTaGGCCTCTTCTGATAAATGC +
Preference number: 5 (lower is better)
Translates to: WEPEAWPLLINAWYLLCKMGTRS*ASSDKC
Trigger: GCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCAT...TTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp GGTTACCAGTTAAAGTCTCAGTGTGACTACTTGGACACCTATTTTTGTTTAGACAGCCCTGCTATAGTGTaGGCCAGAGCACTGCGACTG +
Preference number: 5 (lower is better)
Translates to: GYQLKSQCDYLDTYFCLDSPAIV*ARALRL
Trigger: CAGTCGCAGTGCTCTGGCCAACACTATAGCAGGGCT...GTCTAAACAAAAATAGGTGTCCAAGTAGTCACACTGAGACTTTAACTGGTAACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp TGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAACTTGCTTTCCCTGTTTaGGGGAAAATGAGGAGAGCT +
Preference number: 5 (lower is better)
Translates to: WEPEAWPLLINAWYLLCKLAFPV*GKMRRA
Trigger: AGCTCTCCTCATTTTCCCCAAAACAGGGAAAGCAAG...TTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp GAACTGAATGAACCCAAGGTGTTACATTTTGTTTCACTACACATGAGGGAGAAGCTCCACATCTTGTCGTaGGTAGTAGTAAGCAGCCCC +
Preference number: 5 (lower is better)
Translates to: ELNEPKVLHFVSLHMREKLHILS*VVVSSP
Trigger: GGGGCTGCTTACTACTACCAACGACAAGATGTGGAG...CTTCTCCCTCATGTGTAGTGAAACAAAATGTAACACCTTGGGTTCATTCAGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp CTACACATGAGGGAGAAGAATAAGCCCTGCTATAGTGTTGGCCAGAGCACTGCGTCTCAGTGTGACTACTaGGACACCTATTTTTGTTTA +
Preference number: 5 (lower is better)
Translates to: LHMREKNKPCYSVGQSTASQCDY*DTYFCL
Trigger: TAAACAAAAATAGGTGTCCAAGTAGTCACACTGAGA...CGCAGTGCTCTGGCCAACACTATAGCAGGGCTTATTCTTCTCCCTCATGTGTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp TGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAAGGGCAGGCTACTGGTTaGTATGATGTATTAGTAGAG +
Preference number: 5 (lower is better)
Translates to: WEPEAWPLLINAWYLLCKGQATG*YDVLVE
Trigger: CTCTACTAATACATCATACAAACCAGTAGCCTGCCC...TTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CAA 90 bp TGTAACAACATCTTGGGGAACTGCTTAGAAATGGGAACAGATAGAGTCTTGGCTCTCTTTAGAGGATATTaGCCCCTTAGGCCCTGTAAC +
Preference number: 5 (lower is better)
Translates to: CNNILGNCLEMGTDRVLALFRGY*PLRPCN
Trigger: GTTACAGGGCCTAAGGGGCAAATATCCTCTAAAGAG...AGCCAAGACTCTATCTGTTCCCATTTCTAAGCAGTTCCCCAAGATGTTGTTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CAA 90 bp GTTGCACAGTACTGGGCAATTCTTAGCCTTCCCTTGGTTCTAGCCTTGATTAGAATTCTTAGCCTTCCCTaGGTTCTAGCCTTGATTAGA +
Preference number: 5 (lower is better)
Translates to: VAQYWAILSLPLVLALIRILSLP*VLALIR
Trigger: TCTAATCAAGGCTAGAACCAAGGGAAGGCTAAGAAT...TCTAATCAAGGCTAGAACCAAGGGAAGGCTAAGAATTGCCCAGTACTGTGCAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp GGACACCTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATGGGAACCAGAACTTGCTTTCCCTGTTTaGGGGAAAATGAGGAGAGCT +
Preference number: 5 (lower is better)
Translates to: GHLFLFRHTIQRAAWEPELAFPV*GKMRRA
Trigger: AGCTCTCCTCATTTTCCCCAAAACAGGGAAAGCAAG...TTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAGGTGTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp GAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAAAGAAGAGGAATTTACTCCTaGCTTTCCCTGTTTTGGGGA +
Preference number: 5 (lower is better)
Translates to: EPEAWPLLINAWYLLCKRRGIYS*LSLFWG
Trigger: TCCCCAAAACAGGGAAAGCAAGGAGTAAATTCCTCT...TCTTTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp GAACTGAATGAACCCAAGGTGTTACATTTTGTTTCACTACACATGAGGGAGAAGGGTGCAGAACTGGTTTaGTCCATAGGAGAATGGTGG +
Preference number: 5 (lower is better)
Translates to: ELNEPKVLHFVSLHMREKGAELV*SIGEWW
Trigger: CCACCATTCTCCTATGGACAAAACCAGTTCTGCACC...CTTCTCCCTCATGTGTAGTGAAACAAAATGTAACACCTTGGGTTCATTCAGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CAA 90 bp GAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAAAGAATTAGTGGTGTATGTTaGGGAAGACCCAAAGGTGCT +
Preference number: 5 (lower is better)
Translates to: EPEAWPLLINAWYLLCKRISGVC*GRPKGA
Trigger: AGCACCTTTGGGTCTTCCCAAACATACACCACTAAT...TCTTTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CAA 90 bp AAGTTCTTGATCCTTTATAAGGTTCAGGCTATCCAGTTTGGTAGAGTTAGAAGAACCAAGAGGTACCCTTaGCAGAAGGATGTGTGGGCA +
Preference number: 5 (lower is better)
Translates to: KFLILYKVQAIQFGRVRRTKRYP*QKDVWA
Trigger: TGCCCACACATCCTTCTGCAAAGGGTACCTCTTGGT...TCTTCTAACTCTACCAAACTGGATAGCCTGAACCTTATAAAGGATCAAGAACTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CAA 90 bp CCATCCCACTGGAACATGTACAGCCTCTTAAATAGGTACCATTTAAGAGCCAATTGGCCAAAGCTCGTTTaGATCCTCATTCATATGTCA +
Preference number: 5 (lower is better)
Translates to: PSHWNMYSLLNRYHLRANWPKLV*ILIHMS
Trigger: TGACATATGAATGAGGATCAAAACGAGCTTTGGCCA...ATTGGCTCTTAAATGGTACCTATTTAAGAGGCTGTACATGTTCCAGTGGGATGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CAA 90 bp TGGGAACCAGAAGCTTGGCCTCTTCTGATAAATGCCTGGTACCTGCTATGTAAATCTCAGTGTGACTACTaGGACACCTATTTTTGTTTA +
Preference number: 5 (lower is better)
Translates to: WEPEAWPLLINAWYLLCKSQCDY*DTYFCL
Trigger: TAAACAAAAATAGGTGTCCAAGTAGTCACACTGAGA...TTTACATAGCAGGTACCAGGCATTTATCAGAAGAGGCCAAGCTTCTGGTTCCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp GGACACCTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATGGGAACCAGAACCCTTGGTTCTAGCCTaGATTAGAGATAGTCTTGTT +
Preference number: 5 (lower is better)
Translates to: GHLFLFRHTIQRAAWEPEPLVLA*IRDSLV
Trigger: AACAAGACTATCTCTAATCAAGGCTAGAACCAAGGG...TTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAGGTGTCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000616135.1
CDS-3UTR CAA 90 bp GGTTACCAGTTAAAGTCTCAGTGTGACTACTTGGACACCTATTTTTGTTTAGACCCCTGTAACAACATCTaGGGGAACTGCTTAGAAATG +
Preference number: 5 (lower is better)
Translates to: GYQLKSQCDYLDTYFCLDPCNNI*GNCLEM
Trigger: CATTTCTAAGCAGTTCCCCAAGATGTTGTTACAGGG...GTCTAAACAAAAATAGGTGTCCAAGTAGTCACACTGAGACTTTAACTGGTAACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CAA 90 bp GAACTGAATGAACCCAAGGTGTTACATTTTGTTTCACTACACATGAGGGAGAAGTCAAAACCTTTTGCTTaGCCAAAGCCAATTAAGTCC +
Preference number: 5 (lower is better)
Translates to: ELNEPKVLHFVSLHMREKSKPFA*PKPIKS
Trigger: GGACTTAATTGGCTTTGGCAAAGCAAAAGGTTTTGA...CTTCTCCCTCATGTGTAGTGAAACAAAATGTAACACCTTGGGTTCATTCAGTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS-3UTR CAA 90 bp GACACCTATTTTTGTTTAGACACACTATTCAAAGGGCTGCATGGGAACCAGAAGTGGTGGTGCATACCATaGAGAAGGTTATTAATTAGT +
Preference number: 5 (lower is better)
Translates to: DTYFCLDTLFKGLHGNQKWWCIP*RRLLIS
Trigger: ACTAATTAATAACCTTCTCAATGGTATGCACCACCA...CTTCTGGTTCCCATGCAGCCCTTTGAATAGTGTGTCTAAACAAAAATAGGTGTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CAA 90 bp GGTTACCAGTTAAAGTCTCAGTGTGACTACTTGGACACCTATTTTTGTTTAGACATTGTCAGGAAAAGGTaGAAGGCTGTGCTTTCTGTA +
Preference number: 5 (lower is better)
Translates to: GYQLKSQCDYLDTYFCLDIVRKR*KAVLSV
Trigger: TACAGAAAGCACAGCCTTCAACCTTTTCCTGACAAT...GTCTAAACAAAAATAGGTGTCCAAGTAGTCACACTGAGACTTTAACTGGTAACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS-3UTR CAA 90 bp GGTTACCAGTTAAAGTCTCAGTGTGACTACTTGGACACCTATTTTTGTTTAGACGCTTCTGTTAAGTTCTaGATCCTTTATAAGGTTCAG +
Preference number: 5 (lower is better)
Translates to: GYQLKSQCDYLDTYFCLDASVKF*ILYKVQ
Trigger: CTGAACCTTATAAAGGATCAAGAACTTAACAGAAGC...GTCTAAACAAAAATAGGTGTCCAAGTAGTCACACTGAGACTTTAACTGGTAACC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS GCA 72 bp TCGTTGGTAGTAGTAAGCAGCCCCAGCTACATGGGCTaGTGTCTGGGCCAGGATCTTGGGGCGTCGGTTGGG +
Preference number: 6 (lower is better)
Translates to: SLVVVSSPSYMG*CLGQDLGASVG
Trigger: CCCAACCGACGCCCCAAGATCCTGGCCCAGACAGCAGCCCATGTAGCTGGGGCTGCTTACTACTACCAACGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS CAA 90 bp ACTGGGTCAGTCAGCATTCGGAGGTGGCAGCTCTGCAAGAAGGGCTaGAGGGCCCGGTCAAACATGGCAGGCGTGCTGAGTACCAGGAAG +
Preference number: 6 (lower is better)
Translates to: TGSVSIRRWQLCKKG*RARSNMAGVLSTRK
Trigger: CTTCCTGGTACTCAGCACGCCTGCCATGTTTGACCGGGCCCTCAAGCCCTTCTTGCAGAGCTGCCACCTCCGAATGCTGACTGACCCAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS GCA 72 bp TCCACTGGGTCAGTCAGCATTCGGAGGTGGCAGCTCTaGAAGAAGGGCTTGAGGGCCCGGTCAAACATGGCA +
Preference number: 6 (lower is better)
Translates to: STGSVSIRRWQL*KKGLRARSNMA
Trigger: TGCCATGTTTGACCGGGCCCTCAAGCCCTTCTTGCAGAGCTGCCACCTCCGAATGCTGACTGACCCAGTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS CCA 72 bp AACACGGCCCAGATGGTAGGCCACACACTGGTCCACTaGGTCAGTCAGCATTCGGAGGTGGCAGCTCTGCAA +
Preference number: 6 (lower is better)
Translates to: NTAQMVGHTLVH*VSQHSEVAALQ
Trigger: TTGCAGAGCTGCCACCTCCGAATGCTGACTGACCCAGTGGACCAGTGTGTGGCCTACCATCTGGGCCGTGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS CCA 72 bp AGGTTTTCTGGGTGGCAGATCTGGCACCTCTATCCCTaGCAGCAGCACTACCCCTCGGATGGCAAACCAGCC +
Preference number: 6 (lower is better)
Translates to: RFSGWQIWHLYP*QQHYPSDGKPA
Trigger: GGCTGGTTTGCCATCCGAGGGGTAGTGCTGCTGCCAGGGATAGAGGTGCCAGATCTGCCACCCAGAAAACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS CAA 72 bp CTGGTTCCCCCATGGGTCAGCCTCCACATCTTGTCGTaGGTAGTAGTAAGCAGCCCCAGCTACATGGGCTGC +
Preference number: 6 (lower is better)
Translates to: LVPPWVSLHILS*VVVSSPSYMGC
Trigger: GCAGCCCATGTAGCTGGGGCTGCTTACTACTACCAACGACAAGATGTGGAGGCTGACCCATGGGGGAACCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS CCA 72 bp AGGTACACAGTCATGAGGTTTTCTGGGTGGCAGATCTaGCACCTCTATCCCTGGCAGCAGCACTACCCCTCG +
Preference number: 6 (lower is better)
Translates to: RYTVMRFSGWQI*HLYPWQQHYPS
Trigger: CGAGGGGTAGTGCTGCTGCCAGGGATAGAGGTGCCAGATCTGCCACCCAGAAAACCTCATGACTGTGTACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS CAA 72 bp TATGCGCTGGTTCCCCCATGGGTCAGCCTCCACATCTaGTCGTTGGTAGTAGTAAGCAGCCCCAGCTACATG +
Preference number: 6 (lower is better)
Translates to: YALVPPWVSLHI*SLVVVSSPSYM
Trigger: CATGTAGCTGGGGCTGCTTACTACTACCAACGACAAGATGTGGAGGCTGACCCATGGGGGAACCAGCGCATA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS TCA 72 bp CAGCATCCCGGTAAGTCCAATCACGCCAGTGGAAATTaGAGCCTTCGAGTAGGGCGATACGGTCAGCTCTTG +
Preference number: 6 (lower is better)
Translates to: QHPGKSNHASGN*SLRVGRYGQLL
Trigger: CAAGAGCTGACCGTATCGCCCTACTCGAAGGCTTCAATTTCCACTGGCGTGATTGGACTTACCGGGATGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS GCA 72 bp TCGAAGCCAAAAGGACATAGCGTGTCCTCGATCTTCTaGTTCAGCTCTGCGACTTTCGGCTCCATAGCGCAC +
Preference number: 6 (lower is better)
Translates to: SKPKGHSVSSIF*FSSATFGSIAH
Trigger: GTGCGCTATGGAGCCGAAAGTCGCAGAGCTGAAGCAGAAGATCGAGGACACGCTATGTCCTTTTGGCTTCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000401061.9
CDS CCA 72 bp AGCTCTTGTAGGTACACAGTCATGAGGTTTTCTGGGTaGCAGATCTGGCACCTCTATCCCTGGCAGCAGCAC +
Preference number: 6 (lower is better)
Translates to: SSCRYTVMRFSG*QIWHLYPWQQH
Trigger: GTGCTGCTGCCAGGGATAGAGGTGCCAGATCTGCCACCCAGAAAACCTCATGACTGTGTACCTACAAGAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1
CDS TCA 72 bp AGGGCGATACGGTCAGCTCTTGTAGGTACACAGTCATaGGGTTTTCTGGGTGGCAGATCTGGCACCTCTATC +
Preference number: 6 (lower is better)
Translates to: RAIRSALVGTQS*GFLGGRSGTSI
Trigger: GATAGAGGTGCCAGATCTGCCACCCAGAAAACCTCATGACTGTGTACCTACAAGAGCTGACCGTATCGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000401061.9
ENST00000616135.1