Pregenerated sensors for MKRN1 (Homo sapiens)
Ensembl gene IDs: ENSG00000133606Ensembl transcript IDs: ENST00000443720.6, ENST00000471104.5, ENST00000473444.1, ENST00000475010.5, ENST00000480552.5, ENST00000496169.5
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTTGTAGCTTTGCTCTGTTTAGATTATGTGGTTTTTGTTCAGTTATaGGAACAATCTTTAAAGGATGGTGGATTGTTGGCTAGCTTAATG | + |
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Preference number: 1 (lower is better) Translates to: LVALLCLDYVVFVQL*EQSLKDGGLLASLM Trigger: CATTAAGCTAGCCAACAATCCACCATCCTTTAAAGATTGTTCTCATAACTGAACAAAAACCACATAATCTAAACAGAGCAAAGCTACAAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| 3UTR-3UTR TCA 90 bp | TGTGGTTTTTGTTCAGTTATGAGAACAATCTTTAAAGGATGGTGGATTGTTGGCTGCGGTCCATCTGGTTaGAAGTTGGCACAAGTTACT | + |
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Preference number: 2 (lower is better) Translates to: CGFCSVMRTIFKGWWIVGCGPSG*KLAQVT Trigger: AGTAACTTGTGCCAACTTTCAACCAGATGGACCGCA...GCCAACAATCCACCATCCTTTAAAGATTGTTCTCATAACTGAACAAAAACCACA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| 3UTR-3UTR TCA 90 bp | AGGAAACATACATTCAGAGCTAGATCAGTTTGTTCACTGAGCCTAAACTGGCTACACGAAGATTCTAACTaGTACACAGGGTTTCCTCAT | + |
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Preference number: 2 (lower is better) Translates to: RKHTFRARSVCSLSLNWLHEDSN*YTGFPH Trigger: ATGAGGAAACCCTGTGTATCAGTTAGAATCTTCGTG...TAGCCAGTTTAGGCTCAGTGAACAAACTGATCTAGCTCTGAATGTATGTTTCCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| 3UTR-3UTR TCA 90 bp | CTAACTGATACACAGGGTTTCCTCATTCAAATAAAAGTAGATAGACCAACTAACTGCGGTCCATCTGGTTaGAAGTTGGCACAAGTTACT | + |
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Preference number: 2 (lower is better) Translates to: LTDTQGFLIQIKVDRPTNCGPSG*KLAQVT Trigger: AGTAACTTGTGCCAACTTTCAACCAGATGGACCGCA...GTTAGTTGGTCTATCTACTTTTATTTGAATGAGGAAACCCTGTGTATCAGTTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| 3UTR-3UTR CCA 90 bp | AAACACAATCTCCTCAGAAAAAGCACGAAGATTCTAACTGATACACAGGGTTTCCATCTGGTTGAAAGTTaGCACAAGTTACTAAATTCT | + |
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Preference number: 2 (lower is better) Translates to: KHNLLRKSTKILTDTQGFHLVES*HKLLNS Trigger: AGAATTTAGTAACTTGTGCCAACTTTCAACCAGATG...GAAACCCTGTGTATCAGTTAGAATCTTCGTGCTTTTTCTGAGGAGATTGTGTTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| 3UTR-3UTR CCA 90 bp | CATACATTCAGAGCTAGATCAGTTTGTTCACTGAGCCTAAACTGGCTAATAATCCATCTGGTTGAAAGTTaGCACAAGTTACTAAATTCT | + |
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Preference number: 2 (lower is better) Translates to: HTFRARSVCSLSLNWLIIHLVES*HKLLNS Trigger: AGAATTTAGTAACTTGTGCCAACTTTCAACCAGATG...GATTATTAGCCAGTTTAGGCTCAGTGAACAAACTGATCTAGCTCTGAATGTATG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| 3UTR-3UTR CCA 90 bp | TGTGGTTTTTGTTCAGTTATGAGAACAATCTTTAAAGGATGGTGGATTGTTGGCAATGGAATAGGAAAGTaGAAATGTAAAACGTCAGGA | + |
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Preference number: 2 (lower is better) Translates to: CGFCSVMRTIFKGWWIVGNGIGK*KCKTSG Trigger: TCCTGACGTTTTACATTTCCACTTTCCTATTCCATT...GCCAACAATCCACCATCCTTTAAAGATTGTTCTCATAACTGAACAAAAACCACA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| 3UTR-3UTR CAA 90 bp | AAACACAATCTCCTCAGAAAAAGCACGAAGATTCTAACTGATACACAGGGTTTCATGCGGTCCATCTGGTaGAAAGTTGGCACAAGTTAC | + |
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Preference number: 3 (lower is better) Translates to: KHNLLRKSTKILTDTQGFMRSIW*KVGTSY Trigger: GTAACTTGTGCCAACTTTCAACCAGATGGACCGCAT...GAAACCCTGTGTATCAGTTAGAATCTTCGTGCTTTTTCTGAGGAGATTGTGTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| 3UTR CCA 72 bp | TGCATGCATTTAAATGCGGTCCATCTGGTTGAAAGTTaGCACAAGTTACTAAATTCTTCCCCAAAAGAGAAA | + |
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Preference number: 3 (lower is better) Translates to: CMHLNAVHLVES*HKLLNSSPKEK Trigger: TTTCTCTTTTGGGGAAGAATTTAGTAACTTGTGCCAACTTTCAACCAGATGGACCGCATTTAAATGCATGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| 3UTR TCA 72 bp | ACACAATCTCCTCAGAAAAAGCACGAAGATTCTAACTaGTACACAGGGTTTCCTCATTCAAATAAAAGTAGA | + |
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Preference number: 3 (lower is better) Translates to: TQSPQKKHEDSN*YTGFPHSNKSR Trigger: TCTACTTTTATTTGAATGAGGAAACCCTGTGTATCAGTTAGAATCTTCGTGCTTTTTCTGAGGAGATTGTGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| 3UTR TCA 72 bp | TTGCTCTGTTTAGATTATGTGGTTTTTGTTCAGTTATaGGAACAATCTTTAAAGGATGGTGGATTGTTGGCT | + |
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Preference number: 3 (lower is better) Translates to: LLCLDYVVFVQL*EQSLKDGGLLA Trigger: AGCCAACAATCCACCATCCTTTAAAGATTGTTCTCATAACTGAACAAAAACCACATAATCTAAACAGAGCAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| CDS-3UTR TCA 90 bp | CTCAGAAAAAGCACGAAGATTCTAACTGATACACAGGGTTTCCTCATTCAAATAGGAGGGGAAGGACACTaGGGCACCCGTTCGGTCCCC | + |
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Preference number: 4 (lower is better) Translates to: LRKSTKILTDTQGFLIQIGGEGH*GTRSVP Trigger: GGGGACCGAACGGGTGCCTCAGTGTCCTTCCCCTCC...TATTTGAATGAGGAAACCCTGTGTATCAGTTAGAATCTTCGTGCTTTTTCTGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000443720.6 |
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| CDS-3UTR GCA 90 bp | TTAAAGGATGGTGGATTGTTGGCTAGCTTAATGAATGGAATAGGAAAGTGGAAAAAGTGTAAGCGGCGGTaGAGCCCCGCGGCTCCGCAG | + |
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Preference number: 4 (lower is better) Translates to: LKDGGLLASLMNGIGKWKKCKRR*SPAAPQ Trigger: CTGCGGAGCCGCGGGGCTGCACCGCCGCTTACACTT...TTTCCACTTTCCTATTCCATTCATTAAGCTAGCCAACAATCCACCATCCTTTAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000480552.5 |
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| CDS-3UTR GCA 90 bp | TGCATGCATTTAAATGCGGTCCATCTGGTTGAAAGTTGGCACAAGTTACTAAATAATACCTCTCCCCGATaGGCTCGCAGCCAGCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: CMHLNAVHLVESWHKLLNNTSPR*ARSQLR Trigger: CCTGAGCTGGCTGCGAGCGCATCGGGGAGAGGTATT...ATTTAGTAACTTGTGCCAACTTTCAACCAGATGGACCGCATTTAAATGCATGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000480552.5 |
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| CDS-3UTR GCA 90 bp | AATCTCCTCAGAAAAAGCACGAAGATTCTAACTGATACACAGGGTTTCCTCATTTCTCATGGGCCTCAATaGACGACTGCAGCGGTCTCC | + |
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Preference number: 4 (lower is better) Translates to: NLLRKSTKILTDTQGFLISHGPQ*TTAAVS Trigger: GGAGACCGCTGCAGTCGTGCATTGAGGCCCATGAGA...AATGAGGAAACCCTGTGTATCAGTTAGAATCTTCGTGCTTTTTCTGAGGAGATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000480552.5 |
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| CDS-3UTR CCA 90 bp | AGGAAACATACATTCAGAGCTAGATCAGTTTGTTCACTGAGCCTAAACTGGCTAGTAGTCCCAGCTACTTaGGAGGCTGAGGCAGAATTG | + |
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Preference number: 4 (lower is better) Translates to: RKHTFRARSVCSLSLNWLVVPAT*EAEAEL Trigger: CAATTCTGCCTCAGCCTCCCAAGTAGCTGGGACTAC...TAGCCAGTTTAGGCTCAGTGAACAAACTGATCTAGCTCTGAATGTATGTTTCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000496169.5 |
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| CDS-3UTR TCA 90 bp | CATTTAAATGCGGTCCATCTGGTTGAAAGTTGGCACAAGTTACTAAATTCTTCCAAGAGAAAGCACAAATaGAGACTGGGGAGGAGTCTC | + |
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Preference number: 4 (lower is better) Translates to: HLNAVHLVESWHKLLNSSKRKHK*RLGRSL Trigger: GAGACTCCTCCCCAGTCTTCATTTGTGCTTTCTCTT...GGAAGAATTTAGTAACTTGTGCCAACTTTCAACCAGATGGACCGCATTTAAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| CDS-3UTR TCA 90 bp | CTCAGAAAAAGCACGAAGATTCTAACTGATACACAGGGTTTCCTCATTCAAATAAAGAGAAAGCACAAATaGAGACTGGGGAGGAGTCTC | + |
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Preference number: 4 (lower is better) Translates to: LRKSTKILTDTQGFLIQIKRKHK*RLGRSL Trigger: GAGACTCCTCCCCAGTCTTCATTTGTGCTTTCTCTT...TATTTGAATGAGGAAACCCTGTGTATCAGTTAGAATCTTCGTGCTTTTTCTGAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| CDS-3UTR TCA 90 bp | ATAGGAAAGTGGAAATGTAAAACGTCAGGAAACATACATTCAGAGCTAGATCAGAAGAGAAAGCACAAATaGAGACTGGGGAGGAGTCTC | + |
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Preference number: 4 (lower is better) Translates to: IGKWKCKTSGNIHSELDQKRKHK*RLGRSL Trigger: GAGACTCCTCCCCAGTCTTCATTTGTGCTTTCTCTT...CTGATCTAGCTCTGAATGTATGTTTCCTGACGTTTTACATTTCCACTTTCCTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| CDS-3UTR TCA 90 bp | CTCAGAAAAAGCACGAAGATTCTAACTGATACACAGGGTTTCCTCATTCAAATATGCGGTCCATCTGGTTaGAAGTTGGCACAAGTTACT | + |
|
Preference number: 4 (lower is better) Translates to: LRKSTKILTDTQGFLIQICGPSG*KLAQVT Trigger: AGTAACTTGTGCCAACTTTCAACCAGATGGACCGCA...TATTTGAATGAGGAAACCCTGTGTATCAGTTAGAATCTTCGTGCTTTTTCTGAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| CDS-3UTR TCA 90 bp | CTCCTCAGAAAAAGCACGAAGATTCTAACTGATACACAGGGTTTCCTCATTCAACACGAAGATTCTAACTaGTACACAGGGTTTCCTCAT | + |
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Preference number: 4 (lower is better) Translates to: LLRKSTKILTDTQGFLIQHEDSN*YTGFPH Trigger: ATGAGGAAACCCTGTGTATCAGTTAGAATCTTCGTG...TTGAATGAGGAAACCCTGTGTATCAGTTAGAATCTTCGTGCTTTTTCTGAGGAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| CDS-3UTR GCA 90 bp | CTAACTGATACACAGGGTTTCCTCATTCAAATAAAAGTAGATAGACCAACTAACGCCTCAATGCACGACTaGAGCGGTCTCCATAAATAC | + |
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Preference number: 4 (lower is better) Translates to: LTDTQGFLIQIKVDRPTNASMHD*SGLHKY Trigger: GTATTTATGGAGACCGCTGCAGTCGTGCATTGAGGC...GTTAGTTGGTCTATCTACTTTTATTTGAATGAGGAAACCCTGTGTATCAGTTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000480552.5 |
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| CDS-3UTR TCA 90 bp | TGTGGTTTTTGTTCAGTTATGAGAACAATCTTTAAAGGATGGTGGATTGTTGGCCACGAAGATTCTAACTaGTACACAGGGTTTCCTCAT | + |
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Preference number: 4 (lower is better) Translates to: CGFCSVMRTIFKGWWIVGHEDSN*YTGFPH Trigger: ATGAGGAAACCCTGTGTATCAGTTAGAATCTTCGTG...GCCAACAATCCACCATCCTTTAAAGATTGTTCTCATAACTGAACAAAAACCACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| CDS-3UTR CCA 90 bp | CTCAGAAAAAGCACGAAGATTCTAACTGATACACAGGGTTTCCTCATTCAAATAAGCACAAATGAAGACTaGGGAGGAGTCTCACTTTAT | + |
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Preference number: 4 (lower is better) Translates to: LRKSTKILTDTQGFLIQISTNED*GGVSLY Trigger: ATAAAGTGAGACTCCTCCCCAGTCTTCATTTGTGCT...TATTTGAATGAGGAAACCCTGTGTATCAGTTAGAATCTTCGTGCTTTTTCTGAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| CDS-3UTR CCA 90 bp | TTAAAGGATGGTGGATTGTTGGCTAGCTTAATGAATGGAATAGGAAAGTGGAAAAGCACAAATGAAGACTaGGGAGGAGTCTCACTTTAT | + |
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Preference number: 4 (lower is better) Translates to: LKDGGLLASLMNGIGKWKSTNED*GGVSLY Trigger: ATAAAGTGAGACTCCTCCCCAGTCTTCATTTGTGCT...TTTCCACTTTCCTATTCCATTCATTAAGCTAGCCAACAATCCACCATCCTTTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| CDS-3UTR TCA 90 bp | CTAACTGATACACAGGGTTTCCTCATTCAAATAAAAGTAGATAGACCAACTAACCACGAAGATTCTAACTaGTACACAGGGTTTCCTCAT | + |
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Preference number: 4 (lower is better) Translates to: LTDTQGFLIQIKVDRPTNHEDSN*YTGFPH Trigger: ATGAGGAAACCCTGTGTATCAGTTAGAATCTTCGTG...GTTAGTTGGTCTATCTACTTTTATTTGAATGAGGAAACCCTGTGTATCAGTTAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| CDS-3UTR CCA 90 bp | CAGGGTTTCCTCATTCAAATAAAAGTAGATAGACCAACTAACCTAGAAGCTAGCCATCTGGTTGAAAGTTaGCACAAGTTACTAAATTCT | + |
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Preference number: 4 (lower is better) Translates to: QGFLIQIKVDRPTNLEASHLVES*HKLLNS Trigger: AGAATTTAGTAACTTGTGCCAACTTTCAACCAGATG...GCTAGCTTCTAGGTTAGTTGGTCTATCTACTTTTATTTGAATGAGGAAACCCTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| CDS-3UTR CCA 90 bp | ATCAGTTTGTTCACTGAGCCTAAACTGGCTAATAATCCATTAAACACAATCTCCAATGGAATAGGAAAGTaGAAATGTAAAACGTCAGGA | + |
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Preference number: 4 (lower is better) Translates to: ISLFTEPKLANNPLNTISNGIGK*KCKTSG Trigger: TCCTGACGTTTTACATTTCCACTTTCCTATTCCATT...GGAGATTGTGTTTAATGGATTATTAGCCAGTTTAGGCTCAGTGAACAAACTGAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| CDS-3UTR CCA 90 bp | CTAACTGATACACAGGGTTTCCTCATTCAAATAAAAGTAGATAGACCAACTAACCATCTGGTTGAAAGTTaGCACAAGTTACTAAATTCT | + |
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Preference number: 4 (lower is better) Translates to: LTDTQGFLIQIKVDRPTNHLVES*HKLLNS Trigger: AGAATTTAGTAACTTGTGCCAACTTTCAACCAGATG...GTTAGTTGGTCTATCTACTTTTATTTGAATGAGGAAACCCTGTGTATCAGTTAG 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| CDS-3UTR CCA 90 bp | GATACACAGGGTTTCCTCATTCAAATAAAAGTAGATAGACCAACTAACCTAGAACATCTGGTTGAAAGTTaGCACAAGTTACTAAATTCT | + |
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Preference number: 4 (lower is better) Translates to: DTQGFLIQIKVDRPTNLEHLVES*HKLLNS Trigger: AGAATTTAGTAACTTGTGCCAACTTTCAACCAGATG...TTCTAGGTTAGTTGGTCTATCTACTTTTATTTGAATGAGGAAACCCTGTGTATC 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| CDS-3UTR CCA 90 bp | CTAACTGATACACAGGGTTTCCTCATTCAAATAAAAGTAGATAGACCAACTAACAATGGAATAGGAAAGTaGAAATGTAAAACGTCAGGA | + |
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Preference number: 4 (lower is better) Translates to: LTDTQGFLIQIKVDRPTNNGIGK*KCKTSG Trigger: TCCTGACGTTTTACATTTCCACTTTCCTATTCCATT...GTTAGTTGGTCTATCTACTTTTATTTGAATGAGGAAACCCTGTGTATCAGTTAG 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| CDS TCA 90 bp | AGGAAGGAGGTAGGAGTGTATAATGCAGCACCATTCTTTTCAAAGTaGACCCAAGCTCTGTTGGGCTCTTCGCTTGAGAAAAGGCTGCAG | + |
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Preference number: 5 (lower is better) Translates to: RKEVGVYNAAPFFSK*TQALLGSSLEKRLQ Trigger: CTGCAGCCTTTTCTCAAGCGAAGAGCCCAACAGAGCTTGGGTTCACTTTGAAAAGAATGGTGCTGCATTATACACTCCTACCTCCTTCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000475010.5 |
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| CDS TCA 90 bp | ACCATTCTTTTCAAAGTGAACCCAAGCTCTGTTGGGCTCTTCGCTTaGGAAAAGGCTGCAGTGCTCATACCTCATTGCCTCCTTGTATTT | + |
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Preference number: 5 (lower is better) Translates to: TILFKVNPSSVGLFA*EKAAVLIPHCLLVF Trigger: AAATACAAGGAGGCAATGAGGTATGAGCACTGCAGCCTTTTCTCAAGCGAAGAGCCCAACAGAGCTTGGGTTCACTTTGAAAAGAATGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000475010.5 |
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| CDS CCA 90 bp | TGTATAATGCAGCACCATTCTTTTCAAAGTGAACCCAAGCTCTGTTaGGCTCTTCGCTTGAGAAAAGGCTGCAGTGCTCATACCTCATTG | + |
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Preference number: 5 (lower is better) Translates to: CIMQHHSFQSEPKLC*ALRLRKGCSAHTSL Trigger: CAATGAGGTATGAGCACTGCAGCCTTTTCTCAAGCGAAGAGCCCAACAGAGCTTGGGTTCACTTTGAAAAGAATGGTGCTGCATTATACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000475010.5 |
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| CDS-3UTR CAA 90 bp | CATACATTCAGAGCTAGATCAGTTTGTTCACTGAGCCTAAACTGGCTAATAATCGAGGCTGAGGCAGAATaGCTTGAACTCGCAGTGGGT | + |
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Preference number: 5 (lower is better) Translates to: HTFRARSVCSLSLNWLIIEAEAE*LELAVG Trigger: ACCCACTGCGAGTTCAAGCAATTCTGCCTCAGCCTC...GATTATTAGCCAGTTTAGGCTCAGTGAACAAACTGATCTAGCTCTGAATGTATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000496169.5 |
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| CDS-3UTR CAA 90 bp | TTAAAGGATGGTGGATTGTTGGCTAGCTTAATGAATGGAATAGGAAAGTGGAAACTGAGGCAGAATTGCTaGAACTCGCAGTGGGTTGGG | + |
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Preference number: 5 (lower is better) Translates to: LKDGGLLASLMNGIGKWKLRQNC*NSQWVG Trigger: CCCAACCCACTGCGAGTTCAAGCAATTCTGCCTCAG...TTTCCACTTTCCTATTCCATTCATTAAGCTAGCCAACAATCCACCATCCTTTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000496169.5 |
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| CDS-3UTR CAA 90 bp | AACGTCAGGAAACATACATTCAGAGCTAGATCAGTTTGTTCACTGAGCCTAAACATGCGGTCCATCTGGTaGAAAGTTGGCACAAGTTAC | + |
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Preference number: 5 (lower is better) Translates to: NVRKHTFRARSVCSLSLNMRSIW*KVGTSY Trigger: GTAACTTGTGCCAACTTTCAACCAGATGGACCGCAT...GTTTAGGCTCAGTGAACAAACTGATCTAGCTCTGAATGTATGTTTCCTGACGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| CDS-3UTR CAA 90 bp | CATACATTCAGAGCTAGATCAGTTTGTTCACTGAGCCTAAACTGGCTAATAATCATGCGGTCCATCTGGTaGAAAGTTGGCACAAGTTAC | + |
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Preference number: 5 (lower is better) Translates to: HTFRARSVCSLSLNWLIIMRSIW*KVGTSY Trigger: GTAACTTGTGCCAACTTTCAACCAGATGGACCGCAT...GATTATTAGCCAGTTTAGGCTCAGTGAACAAACTGATCTAGCTCTGAATGTATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| CDS CCA 90 bp | ACGCCTTGTTGCTGGAAAGGAAAATATCGCAACCCTTATTCACAGTaGATTTCAGGTCTGTATTTGACTATCATCCGGGGTTTCTTTAAA | + |
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Preference number: 5 (lower is better) Translates to: TPCCWKGKYRNPYSQ*ISGLYLTIIRGFFK Trigger: TTTAAAGAAACCCCGGATGATAGTCAAATACAGACCTGAAATCCACTGTGAATAAGGGTTGCGATATTTTCCTTTCCAGCAACAAGGCGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000475010.5 |
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| CDS-3UTR CAA 90 bp | AAATGCATGCATTTAAATGCGGTCCATCTGGTTGAAAGTTGGCACAAGTTACTAAAGGATGGTGGATTGTaGGCTAGCTTAATGAATGGA | + |
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Preference number: 5 (lower is better) Translates to: KCMHLNAVHLVESWHKLLKDGGL*ASLMNG Trigger: TCCATTCATTAAGCTAGCCAACAATCCACCATCCTT...TAGTAACTTGTGCCAACTTTCAACCAGATGGACCGCATTTAAATGCATGCATTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| CDS-3UTR CAA 90 bp | CAGGGTTTCCTCATTCAAATAAAAGTAGATAGACCAACTAACCTAGAAGCTAGCAAGGATGGTGGATTGTaGGCTAGCTTAATGAATGGA | + |
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Preference number: 5 (lower is better) Translates to: QGFLIQIKVDRPTNLEASKDGGL*ASLMNG Trigger: TCCATTCATTAAGCTAGCCAACAATCCACCATCCTT...GCTAGCTTCTAGGTTAGTTGGTCTATCTACTTTTATTTGAATGAGGAAACCCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| CDS-3UTR CAA 90 bp | CATTTAAATGCGGTCCATCTGGTTGAAAGTTGGCACAAGTTACTAAATTCTTCCTTAAAGGATGGTGGATaGTTGGCTAGCTTAATGAAT | + |
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Preference number: 5 (lower is better) Translates to: HLNAVHLVESWHKLLNSSLKDGG*LASLMN Trigger: ATTCATTAAGCTAGCCAACAATCCACCATCCTTTAA...GGAAGAATTTAGTAACTTGTGCCAACTTTCAACCAGATGGACCGCATTTAAATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| CDS-3UTR CAA 90 bp | CAGGGTTTCCTCATTCAAATAAAAGTAGATAGACCAACTAACCTAGAAGCTAGCTTAAAGGATGGTGGATaGTTGGCTAGCTTAATGAAT | + |
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Preference number: 5 (lower is better) Translates to: QGFLIQIKVDRPTNLEASLKDGG*LASLMN Trigger: ATTCATTAAGCTAGCCAACAATCCACCATCCTTTAA...GCTAGCTTCTAGGTTAGTTGGTCTATCTACTTTTATTTGAATGAGGAAACCCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| CDS-3UTR CAA 90 bp | CTAACTGATACACAGGGTTTCCTCATTCAAATAAAAGTAGATAGACCAACTAACTTAAAGGATGGTGGATaGTTGGCTAGCTTAATGAAT | + |
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Preference number: 5 (lower is better) Translates to: LTDTQGFLIQIKVDRPTNLKDGG*LASLMN Trigger: ATTCATTAAGCTAGCCAACAATCCACCATCCTTTAA...GTTAGTTGGTCTATCTACTTTTATTTGAATGAGGAAACCCTGTGTATCAGTTAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000443720.6 ENST00000480552.5 ENST00000496169.5 |
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| CDS TCA 72 bp | CGGACAGCGCTGAGGGCTCCGCGGCCCAGCGGGGGTTaGCGCAGTGACTGGGGGAACGCGGCGGCAGCGGGG | + |
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Preference number: 6 (lower is better) Translates to: RTALRAPRPSGG*RSDWGNAAAAG Trigger: CCCCGCTGCCGCCGCGTTCCCCCAGTCACTGCGTCAACCCCCGCTGGGCCGCGGAGCCCTCAGCGCTGTCCG 78% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000471104.5 ENST00000473444.1 |
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| CDS TCA 72 bp | AGTAATCGCGCACCGCCAGGCCTCCGCGGACAGCGCTaGGGGCTCCGCGGCCCAGCGGGGGTTGACGCAGTG | + |
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Preference number: 6 (lower is better) Translates to: SNRAPPGLRGQR*GLRGPAGVDAV Trigger: CACTGCGTCAACCCCCGCTGGGCCGCGGAGCCCTCAGCGCTGTCCGCGGAGGCCTGGCGGTGCGCGATTACT 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000471104.5 ENST00000473444.1 |
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| CDS TCA 72 bp | AGGCCCGGAGAGGATCGCTGGGAGACCGGCCTCAAGTaGCCACCTCCCGAGCCCCGGGAGCCGGAGGCAGCG | + |
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Preference number: 6 (lower is better) Translates to: RPGEDRWETGLK*PPPEPREPEAA Trigger: CGCTGCCTCCGGCTCCCGGGGCTCGGGAGGTGGTCACTTGAGGCCGGTCTCCCAGCGATCCTCTCCGGGCCT 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000471104.5 |
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| CDS TCA 72 bp | GGGCCCAGAGGTTGCAGTGAACCAGGATCACGCCACTaGGACTCCGTCTCTCCCCGATGCGCTCGCAGCCAG | + |
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Preference number: 6 (lower is better) Translates to: GPRGCSEPGSRH*DSVSPRCARSQ Trigger: CTGGCTGCGAGCGCATCGGGGAGAGACGGAGTCTCAGTGGCGTGATCCTGGTTCACTGCAACCTCTGGGCCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000473444.1 |
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| CDS TCA 72 bp | TTCAAAGTGAACCCAAGCTCTGTTGGGCTCTTCGCTTaGGAAAAGGCTGCAGTGCTCATACCTCATTGCCTC | + |
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Preference number: 6 (lower is better) Translates to: FKVNPSSVGLFA*EKAAVLIPHCL Trigger: GAGGCAATGAGGTATGAGCACTGCAGCCTTTTCTCAAGCGAAGAGCCCAACAGAGCTTGGGTTCACTTTGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000475010.5 |
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| CDS CCA 72 bp | CAGCACCATTCTTTTCAAAGTGAACCCAAGCTCTGTTaGGCTCTTCGCTTGAGAAAAGGCTGCAGTGCTCAT | + |
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Preference number: 6 (lower is better) Translates to: QHHSFQSEPKLC*ALRLRKGCSAH Trigger: ATGAGCACTGCAGCCTTTTCTCAAGCGAAGAGCCCAACAGAGCTTGGGTTCACTTTGAAAAGAATGGTGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000475010.5 |
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| CDS CAA 72 bp | TTTCAAAGTGAACCCAAGCTCTGTTGGGCTCTTCGCTaGAGAAAAGGCTGCAGTGCTCATACCTCATTGCCT | + |
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Preference number: 6 (lower is better) Translates to: FQSEPKLCWALR*RKGCSAHTSLP Trigger: AGGCAATGAGGTATGAGCACTGCAGCCTTTTCTCAAGCGAAGAGCCCAACAGAGCTTGGGTTCACTTTGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000475010.5 |
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| CDS CAA 90 bp | CACCATTCTTTTCAAAGTGAACCCAAGCTCTGTTGGGCTCTTCGCTaGAGAAAAGGCTGCAGTGCTCATACCTCATTGCCTCCTTGTATT | + |
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Preference number: 6 (lower is better) Translates to: HHSFQSEPKLCWALR*RKGCSAHTSLPPCI Trigger: AATACAAGGAGGCAATGAGGTATGAGCACTGCAGCCTTTTCTCAAGCGAAGAGCCCAACAGAGCTTGGGTTCACTTTGAAAAGAATGGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000475010.5 |
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| CDS TCA 72 bp | GTAGGAGTGTATAATGCAGCACCATTCTTTTCAAAGTaGACCCAAGCTCTGTTGGGCTCTTCGCTTGAGAAA | + |
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Preference number: 6 (lower is better) Translates to: VGVYNAAPFFSK*TQALLGSSLEK Trigger: TTTCTCAAGCGAAGAGCCCAACAGAGCTTGGGTTCACTTTGAAAAGAATGGTGCTGCATTATACACTCCTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000475010.5 |
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