RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MIS18BP1 (Homo sapiens)

Ensembl gene IDs: ENSG00000129534

Ensembl transcript IDs: ENST00000310806.9, ENST00000451174.1, ENST00000453142.3, ENST00000454990.5, ENST00000469020.5, ENST00000492652.1, ENST00000494512.1, ENST00000554093.1, ENST00000627697.1

Found 208 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TACTCTTCAGTTCCAAATTATCACAATCAAAATCGTAAGTGGTGGTaGCTCTTTGAGCAGTATCTGTTTGGTTTTCTCGTGCATCATTTT +
Preference number: 1 (lower is better)
Translates to: YSSVPNYHNQNRKWW*LFEQYLFGFLVHHF
Trigger: AAAATGATGCACGAGAAAACCAAACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGTGATAATTTGGAACTGAAGAGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
3UTR TCA 90 bp GGAAACTTGGCAACAGTATTCTTTGATGCTGTAAAGGTGTTGTACTaGAAAAATCATCATGGTCATCTTTTGGCAACTGTTCCAGAAATT +
Preference number: 1 (lower is better)
Translates to: GNLATVFFDAVKVLY*KNHHGHLLATVPEI
Trigger: AATTTCTGGAACAGTTGCCAAAAGATGACCATGATGATTTTTTCAGTACAACACCTTTACAGCATCAAAGAATACTGTTGCCAAGTTTCC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000554093.1
3UTR-3UTR CCA 90 bp TCAGTTCCAAATTATCACAATCAAAATCGTAAGTGGTGGTGGCTCTTTGAGCAGGTAATCCCAACACTTTaGGAGGCTGAGACAGGCGGA +
Preference number: 2 (lower is better)
Translates to: SVPNYHNQNRKWWWLFEQVIPTL*EAETGG
Trigger: TCCGCCTGTCTCAGCCTCCCAAAGTGTTGGGATTAC...CTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGTGATAATTTGGAACTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
3UTR-3UTR CCA 90 bp CACTGTCCTGGAAACTTGGCAACAGTATTCTTTGATGCTGTAAAGGTGTTGTACCCTCTCTTGCCATTTTaGCCTTTGGAATTGGCTGGC +
Preference number: 2 (lower is better)
Translates to: HCPGNLATVFFDAVKVLYPLLPF*PLELAG
Trigger: GCCAGCCAATTCCAAAGGCCAAAATGGCAAGAGAGG...GTACAACACCTTTACAGCATCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000554093.1
3UTR-3UTR GCA 90 bp CACTGTCCTGGAAACTTGGCAACAGTATTCTTTGATGCTGTAAAGGTGTTGTACCAGCATCACCTCTCTTaGCATTTTGGCCTTTGGAAT +
Preference number: 2 (lower is better)
Translates to: HCPGNLATVFFDAVKVLYQHHLS*HFGLWN
Trigger: ATTCCAAAGGCCAAAATGGCAAGAGAGGTGATGCTG...GTACAACACCTTTACAGCATCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000554093.1
3UTR-3UTR CCA 90 bp CACTGTCCTGGAAACTTGGCAACAGTATTCTTTGATGCTGTAAAGGTGTTGTACGCCTTTGGAATTGGCTaGCTTCTTCTTAGTGACATG +
Preference number: 2 (lower is better)
Translates to: HCPGNLATVFFDAVKVLYAFGIG*LLLSDM
Trigger: CATGTCACTAAGAAGAAGCCAGCCAATTCCAAAGGC...GTACAACACCTTTACAGCATCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554093.1
3UTR-3UTR CCA 90 bp CACTGTCCTGGAAACTTGGCAACAGTATTCTTTGATGCTGTAAAGGTGTTGTACTGCCATTTTGGCCTTTaGAATTGGCTGGCTTCTTCT +
Preference number: 2 (lower is better)
Translates to: HCPGNLATVFFDAVKVLYCHFGL*NWLASS
Trigger: AGAAGAAGCCAGCCAATTCCAAAGGCCAAAATGGCA...GTACAACACCTTTACAGCATCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000554093.1
3UTR-3UTR CCA 90 bp CACTGTCCTGGAAACTTGGCAACAGTATTCTTTGATGCTGTAAAGGTGTTGTACTCCATGTATTTCCTCTaGCATTCTTCAGGAGATCGA +
Preference number: 2 (lower is better)
Translates to: HCPGNLATVFFDAVKVLYSMYFL*HSSGDR
Trigger: TCGATCTCCTGAAGAATGCCAGAGGAAATACATGGA...GTACAACACCTTTACAGCATCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554093.1
3UTR-3UTR TCA 90 bp CACTGTCCTGGAAACTTGGCAACAGTATTCTTTGATGCTGTAAAGGTGTTGTACTTAATAGTTTGTTTCTaGTCAGCATCACCTCTCTTG +
Preference number: 2 (lower is better)
Translates to: HCPGNLATVFFDAVKVLYLIVCF*SASPLL
Trigger: CAAGAGAGGTGATGCTGATCAGAAACAAACTATTAA...GTACAACACCTTTACAGCATCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554093.1
3UTR-3UTR TCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAAGTAAGCTGCAGCAATaGGGATATTTTACTTTGAAC +
Preference number: 2 (lower is better)
Translates to: CVARGKISYVKFQNITSKSKLQQ*GYFTLN
Trigger: GTTCAAAGTAAAATATCCTCATTGCTGCAGCTTACT...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000310806.9
3UTR-3UTR CCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAAATCCTACTCTGGCTTaGATAATAACTGCTAACAAA +
Preference number: 2 (lower is better)
Translates to: CVARGKISYVKFQNITSKNPTLA*IITANK
Trigger: TTTGTTAGCAGTTATTATCCAAGCCAGAGTAGGATT...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
34% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000310806.9
3UTR-3UTR CAA 90 bp CACTGTCCTGGAAACTTGGCAACAGTATTCTTTGATGCTGTAAAGGTGTTGTACTTGCCATTTTGGCCTTaGGAATTGGCTGGCTTCTTC +
Preference number: 3 (lower is better)
Translates to: HCPGNLATVFFDAVKVLYLPFWP*ELAGFF
Trigger: GAAGAAGCCAGCCAATTCCAAAGGCCAAAATGGCAA...GTACAACACCTTTACAGCATCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000554093.1
3UTR-3UTR CAA 90 bp CACTGTCCTGGAAACTTGGCAACAGTATTCTTTGATGCTGTAAAGGTGTTGTACTCAGCATCACCTCTCTaGCCATTTTGGCCTTTGGAA +
Preference number: 3 (lower is better)
Translates to: HCPGNLATVFFDAVKVLYSASPL*PFWPLE
Trigger: TTCCAAAGGCCAAAATGGCAAGAGAGGTGATGCTGA...GTACAACACCTTTACAGCATCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000554093.1
3UTR-3UTR CAA 90 bp CACTGTCCTGGAAACTTGGCAACAGTATTCTTTGATGCTGTAAAGGTGTTGTACTTTTGGCCTTTGGAATaGGCTGGCTTCTTCTTAGTG +
Preference number: 3 (lower is better)
Translates to: HCPGNLATVFFDAVKVLYFWPLE*AGFFLV
Trigger: CACTAAGAAGAAGCCAGCCAATTCCAAAGGCCAAAA...GTACAACACCTTTACAGCATCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000554093.1
3UTR-3UTR CAA 90 bp CACTGTCCTGGAAACTTGGCAACAGTATTCTTTGATGCTGTAAAGGTGTTGTACAAATTCCCTCATCTGTaGCTTCCTTTTAAGAGTTCC +
Preference number: 3 (lower is better)
Translates to: HCPGNLATVFFDAVKVLYKFPHL*LPFKSS
Trigger: GGAACTCTTAAAAGGAAGCAACAGATGAGGGAATTT...GTACAACACCTTTACAGCATCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000554093.1
3UTR CCA 72 bp GTTCCAAATTATCACAATCAAAATCGTAAGTGGTGGTaGCTCTTTGAGCAGTATCTGTTTGGTTTTCTCGTG +
Preference number: 3 (lower is better)
Translates to: VPNYHNQNRKWW*LFEQYLFGFLV
Trigger: CACGAGAAAACCAAACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGTGATAATTTGGAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
3UTR CCA 72 bp TCAGTTCCAAATTATCACAATCAAAATCGTAAGTGGTaGTGGCTCTTTGAGCAGTATCTGTTTGGTTTTCTC +
Preference number: 3 (lower is better)
Translates to: SVPNYHNQNRKW*WLFEQYLFGFL
Trigger: GAGAAAACCAAACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGTGATAATTTGGAACTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
3UTR-3UTR CAA 90 bp CAAATTATCACAATCAAAATCGTAAGTGGTGGTGGCTCTTTGAGCAGTATCTGTGTGCATCATTTTTCATaGATTTCCTTATGTCACGGA +
Preference number: 3 (lower is better)
Translates to: QIITIKIVSGGGSLSSICVHHFS*ISLCHG
Trigger: TCCGTGACATAAGGAAATCAATGAAAAATGATGCAC...ACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGTGATAATTTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
3UTR CCA 72 bp TCTTCAGTTCCAAATTATCACAATCAAAATCGTAAGTaGTGGTGGCTCTTTGAGCAGTATCTGTTTGGTTTT +
Preference number: 3 (lower is better)
Translates to: SSVPNYHNQNRK*WWLFEQYLFGF
Trigger: AAAACCAAACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGTGATAATTTGGAACTGAAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR TCA 90 bp TGTTTGGTCTTTTCCCTGTTCTTTTCACCAGCCCTCAGGCCAGGCACAGTGGCTGTGGTGGTGGCTCTTTaGGCAGTATCTGTTTGGTTT +
Preference number: 4 (lower is better)
Translates to: CLVFSLFFSPALRPGTVAVVVAL*AVSVWF
Trigger: AAACCAAACAGATACTGCTCAAAGAGCCACCACCAC...AGCCACTGTGCCTGGCCTGAGGGCTGGTGAAAAGAACAGGGAAAAGACCAAACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR GCA 90 bp CACAATCAAAATCGTAAGTGGTGGTGGCTCTTTGAGCAGTATCTGTTTGGTTTTCTGGCAGGGAGAGACTaGCGCAGTTCCGGCTCGGCT +
Preference number: 4 (lower is better)
Translates to: HNQNRKWWWLFEQYLFGFLAGRD*RSSGSA
Trigger: AGCCGAGCCGGAACTGCGGCAGTCTCTCCCTGCCAG...AAAACCAAACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000454990.5
CDS-3UTR TCA 90 bp CACTGTCCTGGAAACTTGGCAACAGTATTCTTTGATGCTGTAAAGGTGTTGTACAGCCGCAGCTACCTCTaGCCAGAAACCAGGTTTGTG +
Preference number: 4 (lower is better)
Translates to: HCPGNLATVFFDAVKVLYSRSYL*PETRFV
Trigger: CACAAACCTGGTTTCTGGTCAGAGGTAGCTGCGGCT...GTACAACACCTTTACAGCATCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554093.1
CDS-3UTR GCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAACTGGCAGGGAGAGACTaGCGCAGTTCCGGCTCGGCT +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKLAGRD*RSSGSA
Trigger: AGCCGAGCCGGAACTGCGGCAGTCTCTCCCTGCCAG...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR TCA 90 bp TGTTTGGTCTTTTCCCTGTTCTTTTCACCAGCCCTCAGGCCAGGCACAGTGGCTATTTGTTTAGCCAACTaGGCTCTAGTTAATGTCTTG +
Preference number: 4 (lower is better)
Translates to: CLVFSLFFSPALRPGTVAICLAN*ALVNVL
Trigger: CAAGACATTAACTAGAGCTCAGTTGGCTAAACAAAT...AGCCACTGTGCCTGGCCTGAGGGCTGGTGAAAAGAACAGGGAAAAGACCAAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR TCA 90 bp TTGGTCTTTTCCCTGTTCTTTTCACCAGCCCTCAGGCCAGGCACAGTGGCTCATTGCATCATTTTTCATTaGTTTCCTTATGTCACGGAC +
Preference number: 4 (lower is better)
Translates to: LVFSLFFSPALRPGTVAHCIIFH*FPYVTD
Trigger: GTCCGTGACATAAGGAAATCAATGAAAAATGATGCA...ATGAGCCACTGTGCCTGGCCTGAGGGCTGGTGAAAAGAACAGGGAAAAGACCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR CCA 90 bp TTGGTCTTTTCCCTGTTCTTTTCACCAGCCCTCAGGCCAGGCACAGTGGCTCATATCCTGCTTCTTTCATaGAAATTTGGTCTATCATGC +
Preference number: 4 (lower is better)
Translates to: LVFSLFFSPALRPGTVAHILLLS*KFGLSC
Trigger: GCATGATAGACCAAATTTCCATGAAAGAAGCAGGAT...ATGAGCCACTGTGCCTGGCCTGAGGGCTGGTGAAAAGAACAGGGAAAAGACCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000454990.5
CDS-3UTR TCA 90 bp GGTTTTCTCGTGCATCATTTTTCATTGATTTCCTTATGTCACGGACAGATCTTCCACAGAAACCTTGGATaGAGAGCCTGGCAGGGAGAG +
Preference number: 4 (lower is better)
Translates to: GFLVHHFSLISLCHGQIFHRNLG*RAWQGE
Trigger: CTCTCCCTGCCAGGCTCTTCATCCAAGGTTTCTGTG...GAAGATCTGTCCGTGACATAAGGAAATCAATGAAAAATGATGCACGAGAAAACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000454990.5
CDS-3UTR CCA 90 bp ATCACAATCAAAATCGTAAGTGGTGGTGGCTCTTTGAGCAGTATCTGTTTGGTTGTAATCCCAACACTTTaGGAGGCTGAGACAGGCGGA +
Preference number: 4 (lower is better)
Translates to: ITIKIVSGGGSLSSICLVVIPTL*EAETGG
Trigger: TCCGCCTGTCTCAGCCTCCCAAAGTGTTGGGATTAC...AACCAAACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR CCA 90 bp GTCATCTCCTCCTCCATTTTGAATAGTATTATTTACTTGGTCATCTGGGAACCTGATCCACAGAAACCTTaGATGAAGAGCCTGGCAGGG +
Preference number: 4 (lower is better)
Translates to: VISSSILNSIIYLVIWEPDPQKP*MKSLAG
Trigger: CCCTGCCAGGCTCTTCATCCAAGGTTTCTGTGGATC...AGGTTCCCAGATGACCAAGTAAATAATACTATTCAAAATGGAGGAGGAGATGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454990.5
CDS-3UTR CCA 90 bp GTCATCTCCTCCTCCATTTTGAATAGTATTATTTACTTGGTCATCTGGGAACCTGTAATCCCAACACTTTaGGAGGCTGAGACAGGCGGA +
Preference number: 4 (lower is better)
Translates to: VISSSILNSIIYLVIWEPVIPTL*EAETGG
Trigger: TCCGCCTGTCTCAGCCTCCCAAAGTGTTGGGATTAC...AGGTTCCCAGATGACCAAGTAAATAATACTATTCAAAATGGAGGAGGAGATGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454990.5
CDS-3UTR TCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAACACAGAAACCTTGGATaGAGAGCCTGGCAGGGAGAG +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKHRNLG*RAWQGE
Trigger: CTCTCCCTGCCAGGCTCTTCATCCAAGGTTTCTGTG...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR TCA 90 bp TCAGTTCCAAATTATCACAATCAAAATCGTAAGTGGTGGTGGCTCTTTGAGCAGGTGGTGGTGGCTCTTTaGGCAGTATCTGTTTGGTTT +
Preference number: 4 (lower is better)
Translates to: SVPNYHNQNRKWWWLFEQVVVAL*AVSVWF
Trigger: AAACCAAACAGATACTGCTCAAAGAGCCACCACCAC...CTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGTGATAATTTGGAACTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR TCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAAGCCGCAGCTACCTCTaGCCAGAAACCAGGTTTGTG +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKSRSYL*PETRFV
Trigger: CACAAACCTGGTTTCTGGTCAGAGGTAGCTGCGGCT...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR TCA 90 bp CACTGTCCTGGAAACTTGGCAACAGTATTCTTTGATGCTGTAAAGGTGTTGTACCTAACACCAGACTTCTaGAGAGTTTCTTTGACGGAA +
Preference number: 4 (lower is better)
Translates to: HCPGNLATVFFDAVKVLYLTPDF*RVSLTE
Trigger: TTCCGTCAAAGAAACTCTTCAGAAGTCTGGTGTTAG...GTACAACACCTTTACAGCATCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554093.1
CDS-3UTR TCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAACTAGCATGCCAGGACTaGCATGCTGACATTGAGGAG +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKLACQD*HADIEE
Trigger: CTCCTCAATGTCAGCATGTCAGTCCTGGCATGCTAG...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR TCA 90 bp CACTGTCCTGGAAACTTGGCAACAGTATTCTTTGATGCTGTAAAGGTGTTGTACACCAGGTTTGTGCAATaGAGTTTCTGTAACTCCTTC +
Preference number: 4 (lower is better)
Translates to: HCPGNLATVFFDAVKVLYTRFVQ*SFCNSF
Trigger: GAAGGAGTTACAGAAACTTCATTGCACAAACCTGGT...GTACAACACCTTTACAGCATCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554093.1
CDS-3UTR CCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAGATCCACAGAAACCTTaGATGAAGAGCCTGGCAGGG +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKDPQKP*MKSLAG
Trigger: CCCTGCCAGGCTCTTCATCCAAGGTTTCTGTGGATC...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CCA 90 bp CAAATTATCACAATCAAAATCGTAAGTGGTGGTGGCTCTTTGAGCAGTATCTGTATCTTTCATGGAACCTaGAAGACCTGTCTCTCCAGG +
Preference number: 4 (lower is better)
Translates to: QIITIKIVSGGGSLSSICIFHGT*KTCLSR
Trigger: CCTGGAGAGACAGGTCTTCCAGGTTCCATGAAAGAT...ACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGTGATAATTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR CCA 90 bp CACAATCAAAATCGTAAGTGGTGGTGGCTCTTTGAGCAGTATCTGTTTGGTTTTAATCGTAAGTGGTGGTaGCTCTTTGAGCAGTATCTG +
Preference number: 4 (lower is better)
Translates to: HNQNRKWWWLFEQYLFGFNRKWW*LFEQYL
Trigger: CAGATACTGCTCAAAGAGCCACCACCACTTACGATT...AAAACCAAACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR TCA 90 bp AATTCTGTAGCTCCTGGTGACTCACTGTGCTTATTACTCTTCAGTTCCAAATTATTCTGTAGCTCCTGGTaGCTCACTGTGCTTATTACT +
Preference number: 4 (lower is better)
Translates to: NSVAPGDSLCLLLFSSKLFCSSW*LTVLIT
Trigger: AGTAATAAGCACAGTGAGTCACCAGGAGCTACAGAA...TAATTTGGAACTGAAGAGTAATAAGCACAGTGAGTCACCAGGAGCTACAGAATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454990.5
CDS-3UTR TCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAGTGCTCTTTCTCAGGTaGACCACTGCTTCTTTGGTG +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKVLFLR*TTASLV
Trigger: CACCAAAGAAGCAGTGGTTCACCTGAGAAAGAGCAC...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR TCA 90 bp CACTGTCCTGGAAACTTGGCAACAGTATTCTTTGATGCTGTAAAGGTGTTGTACGGCAACAGTATTCTTTaGTGCTGTAAAGGTGTTGTA +
Preference number: 4 (lower is better)
Translates to: HCPGNLATVFFDAVKVLYGNSIL*CCKGVV
Trigger: TACAACACCTTTACAGCATCAAAGAATACTGTTGCC...GTACAACACCTTTACAGCATCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554093.1
CDS-3UTR TCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAGAGAACAAGGGTAGGTaGATGTGTAGCCAGAGGGAA +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKENKGR*MCSQRE
Trigger: TTCCCTCTGGCTACACATTCACCTACCCTTGTTCTC...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CCA 90 bp AATTCTGTAGCTCCTGGTGACTCACTGTGCTTATTACTCTTCAGTTCCAAATTATCTAGAGGAACTCCTTaGACTGAGGCTCTTAGTGAA +
Preference number: 4 (lower is better)
Translates to: NSVAPGDSLCLLLFSSKLSRGTP*TEALSE
Trigger: TTCACTAAGAGCCTCAGTCCAAGGAGTTCCTCTAGA...TAATTTGGAACTGAAGAGTAATAAGCACAGTGAGTCACCAGGAGCTACAGAATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454990.5
CDS-3UTR CCA 90 bp GTGCATCATTTTTCATTGATTTCCTTATGTCACGGACAGATCTTCCAGTTTTCTATCTTTCATGGAACCTaGAAGACCTGTCTCTCCAGG +
Preference number: 4 (lower is better)
Translates to: VHHFSLISLCHGQIFQFSIFHGT*KTCLSR
Trigger: CCTGGAGAGACAGGTCTTCCAGGTTCCATGAAAGAT...AGAAAACTGGAAGATCTGTCCGTGACATAAGGAAATCAATGAAAAATGATGCAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR CCA 90 bp CTTCAGTTCCAAATTATCACAATCAAAATCGTAAGTGGTGGTGGCTCTTTGAGCCAAAATCGTAAGTGGTaGTGGCTCTTTGAGCAGTAT +
Preference number: 4 (lower is better)
Translates to: LQFQIITIKIVSGGGSLSQNRKW*WLFEQY
Trigger: ATACTGCTCAAAGAGCCACCACCACTTACGATTTTG...GCTCAAAGAGCCACCACCACTTACGATTTTGATTGTGATAATTTGGAACTGAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR CCA 90 bp CACTGTCCTGGAAACTTGGCAACAGTATTCTTTGATGCTGTAAAGGTGTTGTACTACTGCCTCAGTAATTaGAAACTCTTTCCTAACACC +
Preference number: 4 (lower is better)
Translates to: HCPGNLATVFFDAVKVLYYCLSN*KLFPNT
Trigger: GGTGTTAGGAAAGAGTTTCCAATTACTGAGGCAGTA...GTACAACACCTTTACAGCATCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554093.1
CDS-3UTR CCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAACCTCTCTTGCCATTTTaGCCTTTGGAATTGGCTGGC +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKPLLPF*PLELAG
Trigger: GCCAGCCAATTCCAAAGGCCAAAATGGCAAGAGAGG...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CCA 90 bp CACTGTCCTGGAAACTTGGCAACAGTATTCTTTGATGCTGTAAAGGTGTTGTACACTGTCCTGGAAACTTaGCAACAGTATTCTTTGATG +
Preference number: 4 (lower is better)
Translates to: HCPGNLATVFFDAVKVLYTVLET*QQYSLM
Trigger: CATCAAAGAATACTGTTGCCAAGTTTCCAGGACAGT...GTACAACACCTTTACAGCATCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554093.1
CDS-3UTR CCA 90 bp CACTGTCCTGGAAACTTGGCAACAGTATTCTTTGATGCTGTAAAGGTGTTGTACTCATCTTCACTGTCCTaGAAACTTGGCAACAGTATT +
Preference number: 4 (lower is better)
Translates to: HCPGNLATVFFDAVKVLYSSSLS*KLGNSI
Trigger: AATACTGTTGCCAAGTTTCCAGGACAGTGAAGATGA...GTACAACACCTTTACAGCATCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554093.1
CDS-3UTR TCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAGGTAGATTTCTCCTTTaGGAAGATGCCTCTGGAGGT +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKGRFLL*EDASGG
Trigger: ACCTCCAGAGGCATCTTCTCAAAGGAGAAATCTACC...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR TCA 90 bp CACAATCAAAATCGTAAGTGGTGGTGGCTCTTTGAGCAGTATCTGTTTGGTTTTCGAGGTATTGTTATATaGAGTCTTGGTGTTGCAAGT +
Preference number: 4 (lower is better)
Translates to: HNQNRKWWWLFEQYLFGFRGIVI*SLGVAS
Trigger: ACTTGCAACACCAAGACTTCATATAACAATACCTCG...AAAACCAAACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR TCA 90 bp ATCACAATCAAAATCGTAAGTGGTGGTGGCTCTTTGAGCAGTATCTGTTTGGTTCGAGGTATTGTTATATaGAGTCTTGGTGTTGCAAGT +
Preference number: 4 (lower is better)
Translates to: ITIKIVSGGGSLSSICLVRGIVI*SLGVAS
Trigger: ACTTGCAACACCAAGACTTCATATAACAATACCTCG...AACCAAACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR TCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAGTGGTGGTGGCTCTTTaGGCAGTATCTGTTTGGTTT +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKVVVAL*AVSVWF
Trigger: AAACCAAACAGATACTGCTCAAAGAGCCACCACCAC...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR TCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAAATCTGTTACTGCTTTaGTGGTGCCAGCGGACAGAT +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKNLLLL*WCQRTD
Trigger: ATCTGTCCGCTGGCACCATCAAAGCAGTAACAGATT...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR TCA 90 bp CACTGTCCTGGAAACTTGGCAACAGTATTCTTTGATGCTGTAAAGGTGTTGTACTTCCATTCCTTATCCTaGATTAAACCAGGTAAGCAT +
Preference number: 4 (lower is better)
Translates to: HCPGNLATVFFDAVKVLYFHSLS*IKPGKH
Trigger: ATGCTTACCTGGTTTAATTCAGGATAAGGAATGGAA...GTACAACACCTTTACAGCATCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554093.1
CDS-3UTR GCA 90 bp CAAATTATCACAATCAAAATCGTAAGTGGTGGTGGCTCTTTGAGCAGTATCTGTCTTGATGGCTGTTCTTaGTTGTCACGCAGTACTTTT +
Preference number: 4 (lower is better)
Translates to: QIITIKIVSGGGSLSSICLDGCS*LSRSTF
Trigger: AAAAGTACTGCGTGACAAGCAAGAACAGCCATCAAG...ACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGTGATAATTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454990.5
CDS-3UTR GCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAATCTCAGGTGAACCACTaGTTCTTTGGTGTTTCCTGC +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKSQVNH*FFGVSC
Trigger: GCAGGAAACACCAAAGAAGCAGTGGTTCACCTGAGA...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR GCA 90 bp CACTGTCCTGGAAACTTGGCAACAGTATTCTTTGATGCTGTAAAGGTGTTGTACCAGAAACCAGGTTTGTaGAATGAAGTTTCTGTAACT +
Preference number: 4 (lower is better)
Translates to: HCPGNLATVFFDAVKVLYQKPGL*NEVSVT
Trigger: AGTTACAGAAACTTCATTGCACAAACCTGGTTTCTG...GTACAACACCTTTACAGCATCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554093.1
CDS-3UTR CCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAATCTTTCATGGAACCTaGAAGACCTGTCTCTCCAGG +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKIFHGT*KTCLSR
Trigger: CCTGGAGAGACAGGTCTTCCAGGTTCCATGAAAGAT...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CCA 90 bp GTGCATCATTTTTCATTGATTTCCTTATGTCACGGACAGATCTTCCAGTTTTCTAATCGTAAGTGGTGGTaGCTCTTTGAGCAGTATCTG +
Preference number: 4 (lower is better)
Translates to: VHHFSLISLCHGQIFQFSNRKWW*LFEQYL
Trigger: CAGATACTGCTCAAAGAGCCACCACCACTTACGATT...AGAAAACTGGAAGATCTGTCCGTGACATAAGGAAATCAATGAAAAATGATGCAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR CCA 90 bp AATTCTGTAGCTCCTGGTGACTCACTGTGCTTATTACTCTTCAGTTCCAAATTACAAAATCGTAAGTGGTaGTGGCTCTTTGAGCAGTAT +
Preference number: 4 (lower is better)
Translates to: NSVAPGDSLCLLLFSSKLQNRKW*WLFEQY
Trigger: ATACTGCTCAAAGAGCCACCACCACTTACGATTTTG...TAATTTGGAACTGAAGAGTAATAAGCACAGTGAGTCACCAGGAGCTACAGAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454990.5
CDS-3UTR CCA 90 bp GTCATCTCCTCCTCCATTTTGAATAGTATTATTTACTTGGTCATCTGGGAACCTAATCAAAATCGTAAGTaGTGGTGGCTCTTTGAGCAG +
Preference number: 4 (lower is better)
Translates to: VISSSILNSIIYLVIWEPNQNRK*WWLFEQ
Trigger: CTGCTCAAAGAGCCACCACCACTTACGATTTTGATT...AGGTTCCCAGATGACCAAGTAAATAATACTATTCAAAATGGAGGAGGAGATGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000454990.5
CDS-3UTR TCA 90 bp TTTAATTCTGTAGCTCCTGGTGACTCACTGTGCTTATTACTCTTCAGTTCCAAAGTGTTGCAATCATCTTaGCAAGAAAGTAGCAACCAA +
Preference number: 4 (lower is better)
Translates to: FNSVAPGDSLCLLLFSSKVLQSS*QESSNQ
Trigger: TTGGTTGCTACTTTCTTGTCAAGATGATTGCAACAC...TTTGGAACTGAAGAGTAATAAGCACAGTGAGTCACCAGGAGCTACAGAATTAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454990.5
CDS-3UTR TCA 90 bp AATCAAAATCGTAAGTGGTGGTGGCTCTTTGAGCAGTATCTGTTTGGTTTTCTCTGCATCATTTTTCATTaGTTTCCTTATGTCACGGAC +
Preference number: 4 (lower is better)
Translates to: NQNRKWWWLFEQYLFGFLCIIFH*FPYVTD
Trigger: GTCCGTGACATAAGGAAATCAATGAAAAATGATGCA...GAGAAAACCAAACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR TCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAATTCTGTAGCTCCTGGTaGCTCACTGTGCTTATTACT +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKFCSSW*LTVLIT
Trigger: AGTAATAAGCACAGTGAGTCACCAGGAGCTACAGAA...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR GCA 90 bp AATCAAAATCGTAAGTGGTGGTGGCTCTTTGAGCAGTATCTGTTTGGTTTTCTCGTCCTAAGTTTGTTGTaGTCAATCCGCTCTATAATT +
Preference number: 4 (lower is better)
Translates to: NQNRKWWWLFEQYLFGFLVLSLL*SIRSII
Trigger: AATTATAGAGCGGATTGAGCACAACAAACTTAGGAC...GAGAAAACCAAACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000454990.5
CDS-3UTR GCA 90 bp CACTGTCCTGGAAACTTGGCAACAGTATTCTTTGATGCTGTAAAGGTGTTGTACAAGCATTCTAAGGGATaGCTATTTGTCTTATCAGAT +
Preference number: 4 (lower is better)
Translates to: HCPGNLATVFFDAVKVLYKHSKG*LFVLSD
Trigger: ATCTGATAAGACAAATAGGCATCCCTTAGAATGCTT...GTACAACACCTTTACAGCATCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554093.1
CDS-3UTR GCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAACAGCATCACCTCTCTTaGCATTTTGGCCTTTGGAAT +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKQHHLS*HFGLWN
Trigger: ATTCCAAAGGCCAAAATGGCAAGAGAGGTGATGCTG...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAATCTAGAGGAACTCCTTaGACTGAGGCTCTTAGTGAA +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKSRGTP*TEALSE
Trigger: TTCACTAAGAGCCTCAGTCCAAGGAGTTCCTCTAGA...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CCA 90 bp AATCAAAATCGTAAGTGGTGGTGGCTCTTTGAGCAGTATCTGTTTGGTTTTCTCAAATTTTCCTGTTCTTaGTTCAGAGTTGGAAGTTCG +
Preference number: 4 (lower is better)
Translates to: NQNRKWWWLFEQYLFGFLKFSCS*FRVGSS
Trigger: CGAACTTCCAACTCTGAACCAAGAACAGGAAAATTT...GAGAAAACCAAACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000454990.5
CDS-3UTR CCA 90 bp CTCGTGCATCATTTTTCATTGATTTCCTTATGTCACGGACAGATCTTCCAGTTTTACATGTATCTTTCATaGAACCTGGAAGACCTGTCT +
Preference number: 4 (lower is better)
Translates to: LVHHFSLISLCHGQIFQFYMYLS*NLEDLS
Trigger: AGACAGGTCTTCCAGGTTCCATGAAAGATACATGTA...AAACTGGAAGATCTGTCCGTGACATAAGGAAATCAATGAAAAATGATGCACGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR CCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAAATCGTAAGTGGTGGTaGCTCTTTGAGCAGTATCTG +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKNRKWW*LFEQYL
Trigger: CAGATACTGCTCAAAGAGCCACCACCACTTACGATT...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CCA 90 bp AATTATCACAATCAAAATCGTAAGTGGTGGTGGCTCTTTGAGCAGTATCTGTTTAATCAAAATCGTAAGTaGTGGTGGCTCTTTGAGCAG +
Preference number: 4 (lower is better)
Translates to: NYHNQNRKWWWLFEQYLFNQNRK*WWLFEQ
Trigger: CTGCTCAAAGAGCCACCACCACTTACGATTTTGATT...AAACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGTGATAATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR CCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAGCCTTTGGAATTGGCTaGCTTCTTCTTAGTGACATG +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKAFGIG*LLLSDM
Trigger: CATGTCACTAAGAAGAAGCCAGCCAATTCCAAAGGC...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAATGCCATTTTGGCCTTTaGAATTGGCTGGCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKCHFGL*NWLASS
Trigger: AGAAGAAGCCAGCCAATTCCAAAGGCCAAAATGGCA...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000310806.9
3UTR CAA 72 bp ATTATCACAATCAAAATCGTAAGTGGTGGTGGCTCTTaGAGCAGTATCTGTTTGGTTTTCTCGTGCATCATT +
Preference number: 4 (lower is better)
Translates to: IITIKIVSGGGS*SSICLVFSCII
Trigger: AATGATGCACGAGAAAACCAAACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGTGATAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR TCA 90 bp CTCGTGCATCATTTTTCATTGATTTCCTTATGTCACGGACAGATCTTCCAGTTTATTTGTTTAGCCAACTaGGCTCTAGTTAATGTCTTG +
Preference number: 4 (lower is better)
Translates to: LVHHFSLISLCHGQIFQFICLAN*ALVNVL
Trigger: CAAGACATTAACTAGAGCTCAGTTGGCTAAACAAAT...AAACTGGAAGATCTGTCCGTGACATAAGGAAATCAATGAAAAATGATGCACGAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR TCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAACTAACACCAGACTTCTaGAGAGTTTCTTTGACGGAA +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKLTPDF*RVSLTE
Trigger: TTCCGTCAAAGAAACTCTTCAGAAGTCTGGTGTTAG...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR GCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAACTTGATGGCTGTTCTTaGTTGTCACGCAGTACTTTT +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKLDGCS*LSRSTF
Trigger: AAAAGTACTGCGTGACAAGCAAGAACAGCCATCAAG...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR GCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAATCCTTAACTTTCTGTTaGGAAGTCCCTTCTGTTGTC +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKSLTFC*EVPSVV
Trigger: GACAACAGAAGGGACTTCGCAACAGAAAGTTAAGGA...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CCA 90 bp CACAATCAAAATCGTAAGTGGTGGTGGCTCTTTGAGCAGTATCTGTTTGGTTTTATTTCCACTTTTCTGTaGTTCCAACAAACTACTGTT +
Preference number: 4 (lower is better)
Translates to: HNQNRKWWWLFEQYLFGFISTFL*FQQTTV
Trigger: AACAGTAGTTTGTTGGAACCACAGAAAAGTGGAAAT...AAAACCAAACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000454990.5
CDS-3UTR CCA 90 bp TGGTTTTCTCGTGCATCATTTTTCATTGATTTCCTTATGTCACGGACAGATCTTTACATGTATCTTTCATaGAACCTGGAAGACCTGTCT +
Preference number: 4 (lower is better)
Translates to: WFSRASFFIDFLMSRTDLYMYLS*NLEDLS
Trigger: AGACAGGTCTTCCAGGTTCCATGAAAGATACATGTA...AAGATCTGTCCGTGACATAAGGAAATCAATGAAAAATGATGCACGAGAAAACCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR CCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAACAAAATCGTAAGTGGTaGTGGCTCTTTGAGCAGTAT +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKQNRKW*WLFEQY
Trigger: ATACTGCTCAAAGAGCCACCACCACTTACGATTTTG...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAAATCAAAATCGTAAGTaGTGGTGGCTCTTTGAGCAG +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKNQNRK*WWLFEQ
Trigger: CTGCTCAAAGAGCCACCACCACTTACGATTTTGATT...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CCA 90 bp TCAGTTCCAAATTATCACAATCAAAATCGTAAGTGGTGGTGGCTCTTTGAGCAGAATGTTGGTTTATTTTaGCAATTACTGTGGCACATG +
Preference number: 4 (lower is better)
Translates to: SVPNYHNQNRKWWWLFEQNVGLF*QLLWHM
Trigger: CATGTGCCACAGTAATTGCCAAAATAAACCAACATT...CTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGTGATAATTTGGAACTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000454990.5
CDS-3UTR CCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAGAACCACTGCTTCTTTaGTGTTTCCTGCTTTGGTTT +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKEPLLL*CFLLWF
Trigger: AAACCAAAGCAGGAAACACCAAAGAAGCAGTGGTTC...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAATCCATGTATTTCCTCTaGCATTCTTCAGGAGATCGA +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKSMYFL*HSSGDR
Trigger: TCGATCTCCTGAAGAATGCCAGAGGAAATACATGGA...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
3UTR CAA 72 bp TTTAAGAGTTCCCACTTTGGCAGTTATCTTAATAGTTaGTTTCTGATCAGCATCACCTCTCTTGCCATTTTG +
Preference number: 4 (lower is better)
Translates to: FKSSHFGSYLNS*FLISITSLAIL
Trigger: CAAAATGGCAAGAGAGGTGATGCTGATCAGAAACAAACTATTAAGATAACTGCCAAAGTGGGAACTCTTAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000554093.1
CDS-3UTR TCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAGTGTTGCAATCATCTTaGCAAGAAAGTAGCAACCAA +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKVLQSS*QESSNQ
Trigger: TTGGTTGCTACTTTCTTGTCAAGATGATTGCAACAC...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR TCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAACGAGGTATTGTTATATaGAGTCTTGGTGTTGCAAGT +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKRGIVI*SLGVAS
Trigger: ACTTGCAACACCAAGACTTCATATAACAATACCTCG...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR TCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAGATGCAAAAGCACAATaGAGTTTCTGTAACTCCTTC +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKDAKAQ*SFCNSF
Trigger: GAAGGAGTTACAGAAACTTCATTGTGCTTTTGCATC...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR TCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAGGCAACAGTATTCTTTaGTGCTGTAAAGGTGTTGTA +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKGNSIL*CCKGVV
Trigger: TACAACACCTTTACAGCATCAAAGAATACTGTTGCC...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAATACATGTATCTTTCATaGAACCTGGAAGACCTGTCT +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKYMYLS*NLEDLS
Trigger: AGACAGGTCTTCCAGGTTCCATGAAAGATACATGTA...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAATACTGCCTCAGTAATTaGAAACTCTTTCCTAACACC +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKYCLSN*KLFPNT
Trigger: GGTGTTAGGAAAGAGTTTCCAATTACTGAGGCAGTA...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAACTGTCCTGGAAACTTaGCAACAGTATTCTTTGATG +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKTVLET*QQYSLM
Trigger: CATCAAAGAATACTGTTGCCAAGTTTCCAGGACAGT...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAATCATCTTCACTGTCCTaGAAACTTGGCAACAGTATT +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKSSSLS*KLGNSI
Trigger: AATACTGTTGCCAAGTTTCCAGGACAGTGAAGATGA...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR TCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAATTTGTTTAGCCAACTaGGCTCTAGTTAATGTCTTG +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKICLAN*ALVNVL
Trigger: CAAGACATTAACTAGAGCTCAGTTGGCTAAACAAAT...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR TCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAATGCATCATTTTTCATTaGTTTCCTTATGTCACGGAC +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKCIIFH*FPYVTD
Trigger: GTCCGTGACATAAGGAAATCAATGAAAAATGATGCA...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR TCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAATTCCATTCCTTATCCTaGATTAAACCAGGTAAGCAT +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKFHSLS*IKPGKH
Trigger: ATGCTTACCTGGTTTAATTCAGGATAAGGAATGGAA...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR TCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAATTAATAGTTTGTTTCTaGTCAGCATCACCTCTCTTG +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKLIVCF*SASPLL
Trigger: CAAGAGAGGTGATGCTGATCAGAAACAAACTATTAA...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR GCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAGTCCTAAGTTTGTTGTaGTCAATCCGCTCTATAATT +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKVLSLL*SIRSII
Trigger: AATTATAGAGCGGATTGAGCACAACAAACTTAGGAC...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAGAACTGTCATCTGACTaGAATGATTTGTTGTTTTCC +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKELSSD*NDLLFS
Trigger: GGAAAACAACAAATCATTCCAGTCAGATGACAGTTC...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAAAATTTTCCTGTTCTTaGTTCAGAGTTGGAAGTTCG +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKKFSCS*FRVGSS
Trigger: CGAACTTCCAACTCTGAACCAAGAACAGGAAAATTT...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
36% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAATCCTGCTTCTTTCATaGAAATTTGGTCTATCATGC +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKILLLS*KFGLSC
Trigger: GCATGATAGACCAAATTTCCATGAAAGAAGCAGGAT...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR GCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAATACCTCATGCATCTTTaGTCTATCACTTTTCTAGAT +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKYLMHL*SITFLD
Trigger: ATCTAGAAAAGTGATAGAGCAAAGATGCATGAGGTA...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR GCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAAAGCATTCTAAGGGATaGCTATTTGTCTTATCAGAT +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKKHSKG*LFVLSD
Trigger: ATCTGATAAGACAAATAGGCATCCCTTAGAATGCTT...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
34% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAATTTCCACTTTTCTGTaGTTCCAACAAACTACTGTT +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKISTFL*FQQTTV
Trigger: AACAGTAGTTTGTTGGAACCACAGAAAAGTGGAAAT...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
34% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CCA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAAATGTTGGTTTATTTTaGCAATTACTGTGGCACATG +
Preference number: 4 (lower is better)
Translates to: CVARGKISYVKFQNITSKNVGLF*QLLWHM
Trigger: CATGTGCCACAGTAATTGCCAAAATAAACCAACATT...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
34% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS GCA 90 bp GGGCCGCACGCCGCCGGGCTCGCGCCTCAGGCCCACGGTGTATCCTaGCCGCGGCGGCCAGGCGCCAAGCGACGCTTACCTCCTCCGCGA +
Preference number: 5 (lower is better)
Translates to: GPHAAGLAPQAHGVS*PRRPGAKRRLPPPR
Trigger: TCGCGGAGGAGGTAAGCGTCGCTTGGCGCCTGGCCGCCGCGGGCAGGATACACCGTGGGCCTGAGGCGCGAGCCCGGCGGCGTGCGGCCC
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000310806.9
ENST00000454990.5
ENST00000494512.1
ENST00000627697.1
CDS GCA 90 bp GGGCACGCGCCCACCCTGAATCCCGCCTTTCCTCTCGTGAAGCTCTaGCGGGACAAGGCTGACGTGGGACGACGTGGGACGCCGTGGGCC +
Preference number: 5 (lower is better)
Translates to: GHAPTLNPAFPLVKL*RDKADVGRRGTPWA
Trigger: GGCCCACGGCGTCCCACGTCGTCCCACGTCAGCCTTGTCCCGGCAGAGCTTCACGAGAGGAAAGGCGGGATTCAGGGTGGGCGCGTGCCC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000494512.1
CDS GCA 90 bp CCTAATGTCCCTGCCCCTTGGATGAAGAGCCTGGCAGGGAGAGACTaGCGCAGTTCCGGCTCGGCTCCGCGCGGAGAGAGGGCCGCACGC +
Preference number: 5 (lower is better)
Translates to: PNVPAPWMKSLAGRD*RSSGSAPRGERAAR
Trigger: GCGTGCGGCCCTCTCTCCGCGCGGAGCCGAGCCGGAACTGCGGCAGTCTCTCCCTGCCAGGCTCTTCATCCAAGGGGCAGGGACATTAGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000451174.1
CDS GCA 90 bp AGGGATCCACAGAAACCTTGGATGAAGAGCCTGGCAGGGAGAGACTaGCGCAGTTCCGGCTCGGCTCCGCGCGGAGAGAGGGCCGCACGC +
Preference number: 5 (lower is better)
Translates to: RDPQKPWMKSLAGRD*RSSGSAPRGERAAR
Trigger: GCGTGCGGCCCTCTCTCCGCGCGGAGCCGAGCCGGAACTGCGGCAGTCTCTCCCTGCCAGGCTCTTCATCCAAGGTTTCTGTGGATCCCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000310806.9
ENST00000454990.5
ENST00000627697.1
CDS GCA 90 bp AAGAGCCCGCCCTCCAGCCAGCCCGGGATTGGCACGCTCGGGAATTaGGCCACCGTGCGTCTCACAGGGACGCAAGAAAACTGCAGGCGG +
Preference number: 5 (lower is better)
Translates to: KSPPSSQPGIGTLGN*ATVRLTGTQENCRR
Trigger: CCGCCTGCAGTTTTCTTGCGTCCCTGTGAGACGCACGGTGGCGCAATTCCCGAGCGTGCCAATCCCGGGCTGGCTGGAGGGCGGGCTCTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000494512.1
ENST00000627697.1
CDS GCA 90 bp CCTGTAGCTGAACTACCTTGGATGAAGAGCCTGGCAGGGAGAGACTaGCGCAGTTCCGGCTCGGCTCCGCGCGGAGAGAGGGCCGCACGC +
Preference number: 5 (lower is better)
Translates to: PVAELPWMKSLAGRD*RSSGSAPRGERAAR
Trigger: GCGTGCGGCCCTCTCTCCGCGCGGAGCCGAGCCGGAACTGCGGCAGTCTCTCCCTGCCAGGCTCTTCATCCAAGGTAGTTCAGCTACAGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000494512.1
CDS GCA 90 bp CCTCCAGCCAGCCCGGGATTGGCACGCTCGGGAATTGCGCCACCGTaGGTCTCACAGGGACGCAAGAAAACTGCAGGCGGCCTCTGCACT +
Preference number: 5 (lower is better)
Translates to: PPASPGLARSGIAPP*VSQGRKKTAGGLCT
Trigger: AGTGCAGAGGCCGCCTGCAGTTTTCTTGCGTCCCTGTGAGACGCACGGTGGCGCAATTCCCGAGCGTGCCAATCCCGGGCTGGCTGGAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000494512.1
ENST00000627697.1
CDS CCA 90 bp CCGCAATTCAAATTTGAAGAGCCCGCCCTCCAGCCAGCCCGGGATTaGCACGCTCGGGAATTGCGCCACCGTGCGTCTCACAGGGACGCA +
Preference number: 5 (lower is better)
Translates to: PQFKFEEPALQPARD*HARELRHRASHRDA
Trigger: TGCGTCCCTGTGAGACGCACGGTGGCGCAATTCCCGAGCGTGCCAATCCCGGGCTGGCTGGAGGGCGGGCTCTTCAAATTTGAATTGCGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000494512.1
ENST00000627697.1
CDS GCA 90 bp CCACCGTGCGTCTCACAGGGACGCAAGAAAACTGCAGGCGGCCTCTaGACTCCGTGGACGGCAGTGTGTCCACAAAAAGTAGGCGACCCT +
Preference number: 5 (lower is better)
Translates to: PPCVSQGRKKTAGGL*TPWTAVCPQKVGDP
Trigger: AGGGTCGCCTACTTTTTGTGGACACACTGCCGTCCACGGAGTGCAGAGGCCGCCTGCAGTTTTCTTGCGTCCCTGTGAGACGCACGGTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000494512.1
ENST00000627697.1
CDS GCA 90 bp CTCGGGAATTGCGCCACCGTGCGTCTCACAGGGACGCAAGAAAACTaGAGGCGGCCTCTGCACTCCGTGGACGGCAGTGTGTCCACAAAA +
Preference number: 5 (lower is better)
Translates to: LGNCATVRLTGTQEN*RRPLHSVDGSVSTK
Trigger: TTTTGTGGACACACTGCCGTCCACGGAGTGCAGAGGCCGCCTGCAGTTTTCTTGCGTCCCTGTGAGACGCACGGTGGCGCAATTCCCGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000494512.1
ENST00000627697.1
CDS CCA 90 bp GTCTCACAGGGACGCAAGAAAACTGCAGGCGGCCTCTGCACTCCGTaGACGGCAGTGTGTCCACAAAAAGTAGGCGACCCTAAGCTGTCA +
Preference number: 5 (lower is better)
Translates to: VSQGRKKTAGGLCTP*TAVCPQKVGDPKLS
Trigger: TGACAGCTTAGGGTCGCCTACTTTTTGTGGACACACTGCCGTCCACGGAGTGCAGAGGCCGCCTGCAGTTTTCTTGCGTCCCTGTGAGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000494512.1
ENST00000627697.1
CDS-3UTR CAA 90 bp TTGGTCTTTTCCCTGTTCTTTTCACCAGCCCTCAGGCCAGGCACAGTGGCTCATGCGAAGTCCCTTCTGTaGTCCTCTCACTATCAGAAA +
Preference number: 5 (lower is better)
Translates to: LVFSLFFSPALRPGTVAHAKSLL*SSHYQK
Trigger: TTTCTGATAGTGAGAGGACAACAGAAGGGACTTCGC...ATGAGCCACTGTGCCTGGCCTGAGGGCTGGTGAAAAGAACAGGGAAAAGACCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR CAA 90 bp TGTTTGGTCTTTTCCCTGTTCTTTTCACCAGCCCTCAGGCCAGGCACAGTGGCTAGTGGTGGTGGCTCTTaGAGCAGTATCTGTTTGGTT +
Preference number: 5 (lower is better)
Translates to: CLVFSLFFSPALRPGTVASGGGS*SSICLV
Trigger: AACCAAACAGATACTGCTCAAAGAGCCACCACCACT...AGCCACTGTGCCTGGCCTGAGGGCTGGTGAAAAGAACAGGGAAAAGACCAAACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR CAA 90 bp TGTTTGGTCTTTTCCCTGTTCTTTTCACCAGCCCTCAGGCCAGGCACAGTGGCTTTGACCTCCGAGGTATaGTTATATGAAGTCTTGGTG +
Preference number: 5 (lower is better)
Translates to: CLVFSLFFSPALRPGTVALTSEV*LYEVLV
Trigger: CACCAAGACTTCATATAACAATACCTCGGAGGTCAA...AGCCACTGTGCCTGGCCTGAGGGCTGGTGAAAAGAACAGGGAAAAGACCAAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR CAA 90 bp AATCAAAATCGTAAGTGGTGGTGGCTCTTTGAGCAGTATCTGTTTGGTTTTCTCGCGAAGTCCCTTCTGTaGTCCTCTCACTATCAGAAA +
Preference number: 5 (lower is better)
Translates to: NQNRKWWWLFEQYLFGFLAKSLL*SSHYQK
Trigger: TTTCTGATAGTGAGAGGACAACAGAAGGGACTTCGC...GAGAAAACCAAACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR CAA 90 bp CTTCAGTTCCAAATTATCACAATCAAAATCGTAAGTGGTGGTGGCTCTTTGAGCCTGGCACTGAATCTTTaGTTTGACCGGGAGGAAAAT +
Preference number: 5 (lower is better)
Translates to: LQFQIITIKIVSGGGSLSLALNL*FDREEN
Trigger: ATTTTCCTCCCGGTCAAACAAAAGATTCAGTGCCAG...GCTCAAAGAGCCACCACCACTTACGATTTTGATTGTGATAATTTGGAACTGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000454990.5
CDS-3UTR CAA 90 bp CTCGTGCATCATTTTTCATTGATTTCCTTATGTCACGGACAGATCTTCCAGTTTGCTCTAGTTAATGTCTaGTTTCGGGCTTCTACAGCC +
Preference number: 5 (lower is better)
Translates to: LVHHFSLISLCHGQIFQFALVNV*FRASTA
Trigger: GGCTGTAGAAGCCCGAAACAAGACATTAACTAGAGC...AAACTGGAAGATCTGTCCGTGACATAAGGAAATCAATGAAAAATGATGCACGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000454990.5
CDS-3UTR CAA 90 bp CACTGTCCTGGAAACTTGGCAACAGTATTCTTTGATGCTGTAAAGGTGTTGTACCTAAGGGATGCCTATTaGTCTTATCAGATCCTACTG +
Preference number: 5 (lower is better)
Translates to: HCPGNLATVFFDAVKVLYLRDAY*SYQILL
Trigger: CAGTAGGATCTGATAAGACAAATAGGCATCCCTTAG...GTACAACACCTTTACAGCATCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554093.1
CDS-3UTR CAA 90 bp CACTGTCCTGGAAACTTGGCAACAGTATTCTTTGATGCTGTAAAGGTGTTGTACCACTGTCCTGGAAACTaGGCAACAGTATTCTTTGAT +
Preference number: 5 (lower is better)
Translates to: HCPGNLATVFFDAVKVLYHCPGN*ATVFFD
Trigger: ATCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTG...GTACAACACCTTTACAGCATCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554093.1
CDS CCA 90 bp TCTTGGTGTTGCAAGTACAATTTTACATGTATCTTTCATGGAACCTaGAAGACCTGTCTCTCCAGGCACTGTTTTTCCATTTCCTTCCTT +
Preference number: 5 (lower is better)
Translates to: SWCCKYNFTCIFHGT*KTCLSRHCFSISFL
Trigger: AAGGAAGGAAATGGAAAAACAGTGCCTGGAGAGACAGGTCTTCCAGGTTCCATGAAAGATACATGTAAAATTGTACTTGCAACACCAAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000310806.9
ENST00000453142.3
ENST00000454990.5
ENST00000492652.1
ENST00000627697.1
CDS-3UTR CAA 90 bp CTCGTGCATCATTTTTCATTGATTTCCTTATGTCACGGACAGATCTTCCAGTTTGATGGCTGTTCTTGCTaGTCACGCAGTACTTTTTCT +
Preference number: 5 (lower is better)
Translates to: LVHHFSLISLCHGQIFQFDGCSC*SRSTFS
Trigger: AGAAAAAGTACTGCGTGACAAGCAAGAACAGCCATC...AAACTGGAAGATCTGTCCGTGACATAAGGAAATCAATGAAAAATGATGCACGAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000454990.5
CDS-3UTR CAA 90 bp ATCACAATCAAAATCGTAAGTGGTGGTGGCTCTTTGAGCAGTATCTGTTTGGTTTTCCTTAACTTTCTGTaGCGAAGTCCCTTCTGTTGT +
Preference number: 5 (lower is better)
Translates to: ITIKIVSGGGSLSSICLVFLNFL*RSPFCC
Trigger: ACAACAGAAGGGACTTCGCAACAGAAAGTTAAGGAA...AACCAAACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGTGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR CAA 90 bp CTTCAGTTCCAAATTATCACAATCAAAATCGTAAGTGGTGGTGGCTCTTTGAGCGATATAGTCCTAAGTTaGTTGTGCTCAATCCGCTCT +
Preference number: 5 (lower is better)
Translates to: LQFQIITIKIVSGGGSLSDIVLS*LCSIRS
Trigger: AGAGCGGATTGAGCACAACAAACTTAGGACTATATC...GCTCAAAGAGCCACCACCACTTACGATTTTGATTGTGATAATTTGGAACTGAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454990.5
CDS-3UTR CAA 90 bp TGGTTTTCTCGTGCATCATTTTTCATTGATTTCCTTATGTCACGGACAGATCTTAGTGGTGGTGGCTCTTaGAGCAGTATCTGTTTGGTT +
Preference number: 5 (lower is better)
Translates to: WFSRASFFIDFLMSRTDLSGGGS*SSICLV
Trigger: AACCAAACAGATACTGCTCAAAGAGCCACCACCACT...AAGATCTGTCCGTGACATAAGGAAATCAATGAAAAATGATGCACGAGAAAACCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS TCA 90 bp CCTACTGCCTCAGTAATTGGAAACTCTTTCCTAACACCAGACTTCTaGAGAGTTTCTTTGACGGAAGGTCTAGCTTTCTTTTGTTTGATA +
Preference number: 5 (lower is better)
Translates to: PTASVIGNSFLTPDF*RVSLTEGLAFFCLI
Trigger: TATCAAACAAAAGAAAGCTAGACCTTCCGTCAAAGAAACTCTTCAGAAGTCTGGTGTTAGGAAAGAGTTTCCAATTACTGAGGCAGTAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000310806.9
ENST00000554093.1
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAGCTCTAGTTAATGTCTaGTTTCGGGCTTCTACAGCC +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKALVNV*FRASTA
Trigger: GGCTGTAGAAGCCCGAAACAAGACATTAACTAGAGC...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp ATCACAATCAAAATCGTAAGTGGTGGTGGCTCTTTGAGCAGTATCTGTTTGGTTACAAACGTGTCCTTTTaGGATTTAGTGGTTGCAACT +
Preference number: 5 (lower is better)
Translates to: ITIKIVSGGGSLSSICLVTNVSF*DLVVAT
Trigger: AGTTGCAACCACTAAATCCAAAAAGGACACGTTTGT...AACCAAACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAGCGAAGTCCCTTCTGTaGTCCTCTCACTATCAGAAA +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKAKSLL*SSHYQK
Trigger: TTTCTGATAGTGAGAGGACAACAGAAGGGACTTCGC...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp CACAATCAAAATCGTAAGTGGTGGTGGCTCTTTGAGCAGTATCTGTTTGGTTTTATAGTCCTAAGTTTGTaGTGCTCAATCCGCTCTATA +
Preference number: 5 (lower is better)
Translates to: HNQNRKWWWLFEQYLFGFIVLSL*CSIRSI
Trigger: TATAGAGCGGATTGAGCACAACAAACTTAGGACTAT...AAAACCAAACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000454990.5
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAAGTGGTGGTGGCTCTTaGAGCAGTATCTGTTTGGTT +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKSGGGS*SSICLV
Trigger: AACCAAACAGATACTGCTCAAAGAGCCACCACCACT...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAAAATCTGTTACTGCTTaGATGGTGCCAGCGGACAGA +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKKSVTA*MVPADR
Trigger: TCTGTCCGCTGGCACCATCAAAGCAGTAACAGATTT...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
40% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAGACCAGAAACCAGGTTaGTGCTTTGGAAGAGATGCA +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKDQKPG*CFGRDA
Trigger: TGCATCTCTTCCAAAGCACAAACCTGGTTTCTGGTC...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAATTGCCATTTTGGCCTTaGGAATTGGCTGGCTTCTTC +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKLPFWP*ELAGFF
Trigger: GAAGAAGCCAGCCAATTCCAAAGGCCAAAATGGCAA...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAATCAGCATCACCTCTCTaGCCATTTTGGCCTTTGGAA +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKSASPL*PFWPLE
Trigger: TTCCAAAGGCCAAAATGGCAAGAGAGGTGATGCTGA...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp ATCACAATCAAAATCGTAAGTGGTGGTGGCTCTTTGAGCAGTATCTGTTTGGTTTTTAATCCATCCTTGTaGGGCTTTATAGCACTGATA +
Preference number: 5 (lower is better)
Translates to: ITIKIVSGGGSLSSICLVFNPSL*GFIALI
Trigger: TATCAGTGCTATAAAGCCCAACAAGGATGGATTAAA...AACCAAACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGTGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000454990.5
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAGATGGCTGTTCTTGCTaGTCACGCAGTACTTTTTCT +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKDGCSC*SRSTFS
Trigger: AGAAAAAGTACTGCGTGACAAGCAAGAACAGCCATC...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAACTGGCACTGAATCTTTaGTTTGACCGGGAGGAAAAT +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKLALNL*FDREEN
Trigger: ATTTTCCTCCCGGTCAAACAAAAGATTCAGTGCCAG...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp TGGTTTTCTCGTGCATCATTTTTCATTGATTTCCTTATGTCACGGACAGATCTTTTCCTTAACTTTCTGTaGCGAAGTCCCTTCTGTTGT +
Preference number: 5 (lower is better)
Translates to: WFSRASFFIDFLMSRTDLFLNFL*RSPFCC
Trigger: ACAACAGAAGGGACTTCGCAACAGAAAGTTAAGGAA...AAGATCTGTCCGTGACATAAGGAAATCAATGAAAAATGATGCACGAGAAAACCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR CAA 90 bp GTGCATCATTTTTCATTGATTTCCTTATGTCACGGACAGATCTTCCAGTTTTCTTTGACCTCCGAGGTATaGTTATATGAAGTCTTGGTG +
Preference number: 5 (lower is better)
Translates to: VHHFSLISLCHGQIFQFSLTSEV*LYEVLV
Trigger: CACCAAGACTTCATATAACAATACCTCGGAGGTCAA...AGAAAACTGGAAGATCTGTCCGTGACATAAGGAAATCAATGAAAAATGATGCAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR CAA 90 bp CAAATTATCACAATCAAAATCGTAAGTGGTGGTGGCTCTTTGAGCAGTATCTGTTTGAGCAGTATCTGTTaGGTTTTCTCGTGCATCATT +
Preference number: 5 (lower is better)
Translates to: QIITIKIVSGGGSLSSICLSSIC*VFSCII
Trigger: AATGATGCACGAGAAAACCAAACAGATACTGCTCAA...ACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGTGATAATTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR CAA 90 bp CTCGTGCATCATTTTTCATTGATTTCCTTATGTCACGGACAGATCTTCCAGTTTTTGAGCAGTATCTGTTaGGTTTTCTCGTGCATCATT +
Preference number: 5 (lower is better)
Translates to: LVHHFSLISLCHGQIFQFLSSIC*VFSCII
Trigger: AATGATGCACGAGAAAACCAAACAGATACTGCTCAA...AAACTGGAAGATCTGTCCGTGACATAAGGAAATCAATGAAAAATGATGCACGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR CAA 90 bp TCAGTTCCAAATTATCACAATCAAAATCGTAAGTGGTGGTGGCTCTTTGAGCAGCTGGGAACCTTAATGTaGGTTTATTTTGGCAATTAC +
Preference number: 5 (lower is better)
Translates to: SVPNYHNQNRKWWWLFEQLGTLM*VYFGNY
Trigger: GTAATTGCCAAAATAAACCAACATTAAGGTTCCCAG...CTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGTGATAATTTGGAACTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000454990.5
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAAACCAGGTTTGTGCTTaGGAAGAGATGCAAAAGCAC +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKNQVCA*EEMQKH
Trigger: GTGCTTTTGCATCTCTTCCAAAGCACAAACCTGGTT...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAATTTTGGCCTTTGGAATaGGCTGGCTTCTTCTTAGTG +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKFWPLE*AGFFLV
Trigger: CACTAAGAAGAAGCCAGCCAATTCCAAAGGCCAAAA...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp CTCGTGCATCATTTTTCATTGATTTCCTTATGTCACGGACAGATCTTCCAGTTTGTTCTTGGTTCAGAGTaGGAAGTTCGTAAGTTAAAT +
Preference number: 5 (lower is better)
Translates to: LVHHFSLISLCHGQIFQFVLGSE*EVRKLN
Trigger: ATTTAACTTACGAACTTCCAACTCTGAACCAAGAAC...AAACTGGAAGATCTGTCCGTGACATAAGGAAATCAATGAAAAATGATGCACGAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000454990.5
CDS-3UTR CAA 90 bp AATTATCACAATCAAAATCGTAAGTGGTGGTGGCTCTTTGAGCAGTATCTGTTTACAAACGTGTCCTTTTaGGATTTAGTGGTTGCAACT +
Preference number: 5 (lower is better)
Translates to: NYHNQNRKWWWLFEQYLFTNVSF*DLVVAT
Trigger: AGTTGCAACCACTAAATCCAAAAAGGACACGTTTGT...AAACAGATACTGCTCAAAGAGCCACCACCACTTACGATTTTGATTGTGATAATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAATTCCTTAACTTTCTGTaGCGAAGTCCCTTCTGTTGT +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKFLNFL*RSPFCC
Trigger: ACAACAGAAGGGACTTCGCAACAGAAAGTTAAGGAA...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAATTGACCTCCGAGGTATaGTTATATGAAGTCTTGGTG +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKLTSEV*LYEVLV
Trigger: CACCAAGACTTCATATAACAATACCTCGGAGGTCAA...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAGATATAGTCCTAAGTTaGTTGTGCTCAATCCGCTCT +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKDIVLS*LCSIRS
Trigger: AGAGCGGATTGAGCACAACAAACTTAGGACTATATC...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp GGTTTTCTCGTGCATCATTTTTCATTGATTTCCTTATGTCACGGACAGATCTTCGTGCATCATTTTTCATaGATTTCCTTATGTCACGGA +
Preference number: 5 (lower is better)
Translates to: GFLVHHFSLISLCHGQIFVHHFS*ISLCHG
Trigger: TCCGTGACATAAGGAAATCAATGAAAAATGATGCAC...GAAGATCTGTCCGTGACATAAGGAAATCAATGAAAAATGATGCACGAGAAAACC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000453142.3
ENST00000454990.5
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAGTCAGAGGTGAGCATTaGTTCCTTTTCAAGGTTAGA +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKVRGEH*FLFKVR
Trigger: TCTAACCTTGAAAAGGAACAAATGCTCACCTCTGAC...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAACTAAGGGATGCCTATTaGTCTTATCAGATCCTACTG +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKLRDAY*SYQILL
Trigger: CAGTAGGATCTGATAAGACAAATAGGCATCCCTTAG...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAACACTGTCCTGGAAACTaGGCAACAGTATTCTTTGAT +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKHCPGN*ATVFFD
Trigger: ATCAAAGAATACTGTTGCCAAGTTTCCAGGACAGTG...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAACTGACATGCTGACATaGAGGAGTTTTTACCAATGG +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKTDMLT*RSFYQW
Trigger: CCATTGGTAAAAACTCCTCAATGTCAGCATGTCAGT...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS TCA 90 bp TTCATTATTTCCACTTTTCTGTGGTTCCAACAAACTACTGTTTCTTaGTGGCTGTTCTTGCTTGTCACGCAGTACTTTTTCTTTCATTCT +
Preference number: 5 (lower is better)
Translates to: FIISTFLWFQQTTVS*WLFLLVTQYFFFHS
Trigger: AGAATGAAAGAAAAAGTACTGCGTGACAAGCAAGAACAGCCATCAAGAAACAGTAGTTTGTTGGAACCACAGAAAAGTGGAAATAATGAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000310806.9
ENST00000451174.1
ENST00000454990.5
ENST00000627697.1
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAACAAACTACTGTTTCTaGATGGCTGTTCTTGCTTGT +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKTNYCF*MAVLAC
Trigger: ACAAGCAAGAACAGCCATCAAGAAACAGTAGTTTGT...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAACAAACGTGTCCTTTTaGGATTTAGTGGTTGCAACT +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKTNVSF*DLVVAT
Trigger: AGTTGCAACCACTAAATCCAAAAAGGACACGTTTGT...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAATAGTCCTAAGTTTGTaGTGCTCAATCCGCTCTATA +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKIVLSL*CSIRSI
Trigger: TATAGAGCGGATTGAGCACAACAAACTTAGGACTAT...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAATTGAGCAGTATCTGTTaGGTTTTCTCGTGCATCATT +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKLSSIC*VFSCII
Trigger: AATGATGCACGAGAAAACCAAACAGATACTGCTCAA...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAATTGGTGTTTCCTGCTTaGGTTTTCTTAACTTCAGCT +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKLVFPA*VFLTSA
Trigger: AGCTGAAGTTAAGAAAACCAAAGCAGGAAACACCAA...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAAAATTCCCTCATCTGTaGCTTCCTTTTAAGAGTTCC +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKKFPHL*LPFKSS
Trigger: GGAACTCTTAAAAGGAAGCAACAGATGAGGGAATTT...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
37% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAATTTAATCCATCCTTGTaGGGCTTTATAGCACTGATA +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKFNPSL*GFIALI
Trigger: TATCAGTGCTATAAAGCCCAACAAGGATGGATTAAA...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAGTTCTTGGTTCAGAGTaGGAAGTTCGTAAGTTAAAT +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKVLGSE*EVRKLN
Trigger: ATTTAACTTACGAACTTCCAACTCTGAACCAAGAAC...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAGTGCATCATTTTTCATaGATTTCCTTATGTCACGGA +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKVHHFS*ISLCHG
Trigger: TCCGTGACATAAGGAAATCAATGAAAAATGATGCAC...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAACTGGGAACCTTAATGTaGGTTTATTTTGGCAATTAC +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKLGTLM*VYFGNY
Trigger: GTAATTGCCAAAATAAACCAACATTAAGGTTCCCAG...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAATACCTCATGCATCTTaGCTCTATCACTTTTCTAGA +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKIPHAS*LYHFSR
Trigger: TCTAGAAAAGTGATAGAGCAAAGATGCATGAGGTAT...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAATATTACTTGTGTTTCTaGTGCTCTTTCTCAGGTGAA +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKYYLCF*CSFSGE
Trigger: TTCACCTGAGAAAGAGCACAAGAAACACAAGTAATA...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAAGGAGTTGTTGGATTTTaGTCCATATTTGGCAGAATA +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKGVVGF*SIFGRI
Trigger: TATTCTGCCAAATATGGACAAAAATCCAACAACTCC...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAACTGATGATGGAGTTGTaGGATTTTTGTCCATATTTG +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKLMMEL*DFCPYL
Trigger: CAAATATGGACAAAAATCCAACAACTCCATCATCAG...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS-3UTR CAA 90 bp TGTGTAGCCAGAGGGAAAATATCCTATGTCAAGTTTCAAAACATAACAAGCAAATTCTTGGTGTTGGAGTaGAGAAATCAGTTTCAACTA +
Preference number: 5 (lower is better)
Translates to: CVARGKISYVKFQNITSKFLVLE*RNQFQL
Trigger: TAGTTGAAACTGATTTCTCAACTCCAACACCAAGAA...TTTGCTTGTTATGTTTTGAAACTTGACATAGGATATTTTCCCTCTGGCTACACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS GCA 72 bp GCCGCCGGGCTCGCGCCTCAGGCCCACGGTGTATCCTaGCCGCGGCGGCCAGGCGCCAAGCGACGCTTACCT +
Preference number: 6 (lower is better)
Translates to: AAGLAPQAHGVS*PRRPGAKRRLP
Trigger: AGGTAAGCGTCGCTTGGCGCCTGGCCGCCGCGGGCAGGATACACCGTGGGCCTGAGGCGCGAGCCCGGCGGC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000310806.9
ENST00000454990.5
ENST00000494512.1
ENST00000627697.1
CDS GCA 72 bp CCTGCCCCTTGGATGAAGAGCCTGGCAGGGAGAGACTaGCGCAGTTCCGGCTCGGCTCCGCGCGGAGAGAGG +
Preference number: 6 (lower is better)
Translates to: PAPWMKSLAGRD*RSSGSAPRGER
Trigger: CCTCTCTCCGCGCGGAGCCGAGCCGGAACTGCGGCAGTCTCTCCCTGCCAGGCTCTTCATCCAAGGGGCAGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000451174.1
CDS CAA 90 bp GAAGAGCCCGCCCTCCAGCCAGCCCGGGATTGGCACGCTCGGGAATaGCGCCACCGTGCGTCTCACAGGGACGCAAGAAAACTGCAGGCG +
Preference number: 6 (lower is better)
Translates to: EEPALQPARDWHARE*RHRASHRDARKLQA
Trigger: CGCCTGCAGTTTTCTTGCGTCCCTGTGAGACGCACGGTGGCGCAATTCCCGAGCGTGCCAATCCCGGGCTGGCTGGAGGGCGGGCTCTTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000494512.1
ENST00000627697.1
CDS GCA 72 bp CAGAAACCTTGGATGAAGAGCCTGGCAGGGAGAGACTaGCGCAGTTCCGGCTCGGCTCCGCGCGGAGAGAGG +
Preference number: 6 (lower is better)
Translates to: QKPWMKSLAGRD*RSSGSAPRGER
Trigger: CCTCTCTCCGCGCGGAGCCGAGCCGGAACTGCGGCAGTCTCTCCCTGCCAGGCTCTTCATCCAAGGTTTCTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000310806.9
ENST00000454990.5
ENST00000627697.1
CDS GCA 72 bp CCCACCCTGAATCCCGCCTTTCCTCTCGTGAAGCTCTaGCGGGACAAGGCTGACGTGGGACGACGTGGGACG +
Preference number: 6 (lower is better)
Translates to: PTLNPAFPLVKL*RDKADVGRRGT
Trigger: CGTCCCACGTCGTCCCACGTCAGCCTTGTCCCGGCAGAGCTTCACGAGAGGAAAGGCGGGATTCAGGGTGGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000494512.1
CDS GCA 72 bp TGCGCCACCGTGCGTCTCACAGGGACGCAAGAAAACTaGAGGCGGCCTCTGCACTCCGTGGACGGCAGTGTG +
Preference number: 6 (lower is better)
Translates to: CATVRLTGTQEN*RRPLHSVDGSV
Trigger: CACACTGCCGTCCACGGAGTGCAGAGGCCGCCTGCAGTTTTCTTGCGTCCCTGTGAGACGCACGGTGGCGCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000494512.1
ENST00000627697.1
CDS GCA 72 bp AGCCCGGGATTGGCACGCTCGGGAATTGCGCCACCGTaGGTCTCACAGGGACGCAAGAAAACTGCAGGCGGC +
Preference number: 6 (lower is better)
Translates to: SPGLARSGIAPP*VSQGRKKTAGG
Trigger: GCCGCCTGCAGTTTTCTTGCGTCCCTGTGAGACGCACGGTGGCGCAATTCCCGAGCGTGCCAATCCCGGGCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000494512.1
ENST00000627697.1
CDS GCA 72 bp CCCTCCAGCCAGCCCGGGATTGGCACGCTCGGGAATTaGGCCACCGTGCGTCTCACAGGGACGCAAGAAAAC +
Preference number: 6 (lower is better)
Translates to: PSSQPGIGTLGN*ATVRLTGTQEN
Trigger: GTTTTCTTGCGTCCCTGTGAGACGCACGGTGGCGCAATTCCCGAGCGTGCCAATCCCGGGCTGGCTGGAGGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000494512.1
ENST00000627697.1
CDS GCA 72 bp GAACTACCTTGGATGAAGAGCCTGGCAGGGAGAGACTaGCGCAGTTCCGGCTCGGCTCCGCGCGGAGAGAGG +
Preference number: 6 (lower is better)
Translates to: ELPWMKSLAGRD*RSSGSAPRGER
Trigger: CCTCTCTCCGCGCGGAGCCGAGCCGGAACTGCGGCAGTCTCTCCCTGCCAGGCTCTTCATCCAAGGTAGTTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000494512.1
CDS CAA 72 bp GCCCTCCAGCCAGCCCGGGATTGGCACGCTCGGGAATaGCGCCACCGTGCGTCTCACAGGGACGCAAGAAAA +
Preference number: 6 (lower is better)
Translates to: ALQPARDWHARE*RHRASHRDARK
Trigger: TTTTCTTGCGTCCCTGTGAGACGCACGGTGGCGCAATTCCCGAGCGTGCCAATCCCGGGCTGGCTGGAGGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000494512.1
ENST00000627697.1
CDS CCA 72 bp AAATTTGAAGAGCCCGCCCTCCAGCCAGCCCGGGATTaGCACGCTCGGGAATTGCGCCACCGTGCGTCTCAC +
Preference number: 6 (lower is better)
Translates to: KFEEPALQPARD*HARELRHRASH
Trigger: GTGAGACGCACGGTGGCGCAATTCCCGAGCGTGCCAATCCCGGGCTGGCTGGAGGGCGGGCTCTTCAAATTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000494512.1
ENST00000627697.1
CDS CCA 72 bp GGACGCAAGAAAACTGCAGGCGGCCTCTGCACTCCGTaGACGGCAGTGTGTCCACAAAAAGTAGGCGACCCT +
Preference number: 6 (lower is better)
Translates to: GRKKTAGGLCTP*TAVCPQKVGDP
Trigger: AGGGTCGCCTACTTTTTGTGGACACACTGCCGTCCACGGAGTGCAGAGGCCGCCTGCAGTTTTCTTGCGTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000494512.1
ENST00000627697.1
CDS GCA 72 bp GTCTCACAGGGACGCAAGAAAACTGCAGGCGGCCTCTaGACTCCGTGGACGGCAGTGTGTCCACAAAAAGTA +
Preference number: 6 (lower is better)
Translates to: VSQGRKKTAGGL*TPWTAVCPQKV
Trigger: TACTTTTTGTGGACACACTGCCGTCCACGGAGTGCAGAGGCCGCCTGCAGTTTTCTTGCGTCCCTGTGAGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000494512.1
ENST00000627697.1
CDS CAA 90 bp AAGCGCAATTTTCAGATAGAACTTCAGAAGGGATCCACAGAAACCTaGGATGAAGAGCCTGGCAGGGAGAGACTGCCGCAGTTCCGGCTC +
Preference number: 6 (lower is better)
Translates to: KRNFQIELQKGSTET*DEEPGRERLPQFRL
Trigger: GAGCCGGAACTGCGGCAGTCTCTCCCTGCCAGGCTCTTCATCCAAGGTTTCTGTGGATCCCTTCTGAAGTTCTATCTGAAAATTGCGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000310806.9
ENST00000454990.5
ENST00000627697.1
CDS TCA 72 bp TCCACTTTTCTGTGGTTCCAACAAACTACTGTTTCTTaGTGGCTGTTCTTGCTTGTCACGCAGTACTTTTTC +
Preference number: 6 (lower is better)
Translates to: STFLWFQQTTVS*WLFLLVTQYFF
Trigger: GAAAAAGTACTGCGTGACAAGCAAGAACAGCCATCAAGAAACAGTAGTTTGTTGGAACCACAGAAAAGTGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000310806.9
ENST00000451174.1
ENST00000454990.5
ENST00000627697.1
CDS TCA 72 bp TTTGACACTCTGGTATTACAAAATCTGTTACTGCTTTaGTGGTGCCAGCGGACAGATTATACCTCATGCATC +
Preference number: 6 (lower is better)
Translates to: FDTLVLQNLLLL*WCQRTDYTSCI
Trigger: GATGCATGAGGTATAATCTGTCCGCTGGCACCATCAAAGCAGTAACAGATTTTGTAATACCAGAGTGTCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS CCA 72 bp TTGGTGTTGCAAGTACAATTTTACATGTATCTTTCATaGAACCTGGAAGACCTGTCTCTCCAGGCACTGTTT +
Preference number: 6 (lower is better)
Translates to: LVLQVQFYMYLS*NLEDLSLQALF
Trigger: AAACAGTGCCTGGAGAGACAGGTCTTCCAGGTTCCATGAAAGATACATGTAAAATTGTACTTGCAACACCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000310806.9
ENST00000453142.3
ENST00000454990.5
ENST00000492652.1
ENST00000627697.1
CDS CAA 72 bp GATGGTGCCAGCGGACAGATTATACCTCATGCATCTTaGCTCTATCACTTTTCTAGATTTAAGTGGTGTTAC +
Preference number: 6 (lower is better)
Translates to: DGASGQIIPHAS*LYHFSRFKWCY
Trigger: GTAACACCACTTAAATCTAGAAAAGTGATAGAGCAAAGATGCATGAGGTATAATCTGTCCGCTGGCACCATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS CCA 72 bp TGCAAGTACAATTTTACATGTATCTTTCATGGAACCTaGAAGACCTGTCTCTCCAGGCACTGTTTTTCCATT +
Preference number: 6 (lower is better)
Translates to: CKYNFTCIFHGT*KTCLSRHCFSI
Trigger: AATGGAAAAACAGTGCCTGGAGAGACAGGTCTTCCAGGTTCCATGAAAGATACATGTAAAATTGTACTTGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000310806.9
ENST00000453142.3
ENST00000454990.5
ENST00000492652.1
ENST00000627697.1
CDS CCA 72 bp CCTATTTGTCTTATCAGATCCTACTGCCTCAGTAATTaGAAACTCTTTCCTAACACCAGACTTCTGAAGAGT +
Preference number: 6 (lower is better)
Translates to: PICLIRSYCLSN*KLFPNTRLLKS
Trigger: ACTCTTCAGAAGTCTGGTGTTAGGAAAGAGTTTCCAATTACTGAGGCAGTAGGATCTGATAAGACAAATAGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000310806.9
ENST00000554093.1
CDS CAA 72 bp TTCCACTTTTCTGTGGTTCCAACAAACTACTGTTTCTaGATGGCTGTTCTTGCTTGTCACGCAGTACTTTTT +
Preference number: 6 (lower is better)
Translates to: FHFSVVPTNYCF*MAVLACHAVLF
Trigger: AAAAAGTACTGCGTGACAAGCAAGAACAGCCATCAAGAAACAGTAGTTTGTTGGAACCACAGAAAAGTGGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000310806.9
ENST00000451174.1
ENST00000454990.5
ENST00000627697.1
CDS TCA 72 bp TCAGTAATTGGAAACTCTTTCCTAACACCAGACTTCTaGAGAGTTTCTTTGACGGAAGGTCTAGCTTTCTTT +
Preference number: 6 (lower is better)
Translates to: SVIGNSFLTPDF*RVSLTEGLAFF
Trigger: AAAGAAAGCTAGACCTTCCGTCAAAGAAACTCTTCAGAAGTCTGGTGTTAGGAAAGAGTTTCCAATTACTGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000310806.9
ENST00000554093.1
CDS CAA 72 bp GCAGAATCAACGCTTTCTAAAACAAACGTGTCCTTTTaGGATTTAGTGGTTGCAACTATACTCTCCTTTGAG +
Preference number: 6 (lower is better)
Translates to: AESTLSKTNVSF*DLVVATILSFE
Trigger: CTCAAAGGAGAGTATAGTTGCAACCACTAAATCCAAAAAGGACACGTTTGTTTTAGAAAGCGTTGATTCTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000310806.9
ENST00000453142.3
ENST00000454990.5
ENST00000627697.1
CDS CCA 72 bp CTGAGAAAAACTGTTCCCTTGAGGTTAGAATATCAATaGATACATCCAATTCTTCAGTTGTCTCTTGCTTCT +
Preference number: 6 (lower is better)
Translates to: LRKTVPLRLEYQ*IHPILQLSLAS
Trigger: AGAAGCAAGAGACAACTGAAGAATTGGATGTATCCATTGATATTCTAACCTCAAGGGAACAGTTTTTCTCAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000310806.9
CDS CAA 90 bp TTTCATTATTTCCACTTTTCTGTGGTTCCAACAAACTACTGTTTCTaGATGGCTGTTCTTGCTTGTCACGCAGTACTTTTTCTTTCATTC +
Preference number: 6 (lower is better)
Translates to: FHYFHFSVVPTNYCF*MAVLACHAVLFLSF
Trigger: GAATGAAAGAAAAAGTACTGCGTGACAAGCAAGAACAGCCATCAAGAAACAGTAGTTTGTTGGAACCACAGAAAAGTGGAAATAATGAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000310806.9
ENST00000451174.1
ENST00000454990.5
ENST00000627697.1
CDS CAA 90 bp GTTTTTACCAATGGAAAGATAACTGATGATGGAGTTGTTGGATTTTaGTCCATATTTGGCAGAATATCATCATCATCTTCACTGTCCTGG +
Preference number: 6 (lower is better)
Translates to: VFTNGKITDDGVVGF*SIFGRISSSSSLSW
Trigger: CCAGGACAGTGAAGATGATGATGATATTCTGCCAAATATGGACAAAAATCCAACAACTCCATCATCAGTTATCTTTCCATTGGTAAAAAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000310806.9
ENST00000469020.5
CDS CAA 90 bp TATTTCTTTTTGACCTCCGAGGTATTGTTATATGAAGTCTTGGTGTaGCAAGTACAATTTTACATGTATCTTTCATGGAACCTGGAAGAC +
Preference number: 6 (lower is better)
Translates to: YFFLTSEVLLYEVLV*QVQFYMYLSWNLED
Trigger: GTCTTCCAGGTTCCATGAAAGATACATGTAAAATTGTACTTGCAACACCAAGACTTCATATAACAATACCTCGGAGGTCAAAAAGAAATA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000310806.9
ENST00000453142.3
ENST00000454990.5
ENST00000492652.1
ENST00000627697.1
CDS TCA 72 bp CTTTTTGGATTTAGTGGTTGCAACTATACTCTCCTTTaGGTGAAAAATTTGTTTAGCCAACTGAGCTCTAGT +
Preference number: 6 (lower is better)
Translates to: LFGFSGCNYTLL*VKNLFSQLSSS
Trigger: ACTAGAGCTCAGTTGGCTAAACAAATTTTTCACTCAAAGGAGAGTATAGTTGCAACCACTAAATCCAAAAAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000310806.9
ENST00000453142.3
ENST00000454990.5
ENST00000627697.1
CDS CAA 72 bp AATTGGAAATTTTACACTGCATCTTCCTCCTTAAGCTaGTATTTCCATTCCACTTCCTTCAGAGAATTTGTC +
Preference number: 6 (lower is better)
Translates to: NWKFYTASSSLS*YFHSTSFREFV
Trigger: GACAAATTCTCTGAAGGAAGTGGAATGGAAATACAAGCTTAAGGAGGAAGATGCAGTGTAAAATTTCCAATT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000492652.1