RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MARCKS (Homo sapiens)

Ensembl gene IDs: ENSG00000277443

Ensembl transcript IDs: ENST00000612661.2

Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTCCTGCAGCTCCTCCTTaGCGCCCGACTCGGCGGCCG +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIPAAPP*RPTRRP
Trigger: CGGCCGCCGAGTCGGGCGCCAAGGAGGAGCTGCAGG...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTCCTTCTCTACCGGGCTaGCCCCGGCCTCGGGGGCAG +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIPSLPG*PRPRGQ
Trigger: CTGCCCCCGAGGCCGGGGCCAGCCCGGTAGAGAAGG...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTTGCTGGGCGAGGGCGTaGCCCCGTCCTCGGCCTTGG +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSICWARA*PRPRPW
Trigger: CCAAGGCCGAGGACGGGGCCACGCCCTCGCCCAGCA...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTCGGCCTCCTGGGGCTTaGCCTCCTGCGGGTCGCCAC +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIRPPGA*PPAGRH
Trigger: GTGGCGACCCGCAGGAGGCCAAGCCCCAGGAGGCCG...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTGCGACAGCGGCCTCCTaGGGCTTGGCCTCCTGCGGG +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIATAAS*GLASCG
Trigger: CCCGCAGGAGGCCAAGCCCCAGGAGGCCGCTGTCGC...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTGGCGGGCGGCTTCTCTaGCGCGACAGCGGCCTCCTG +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIGGRLL*RDSGLL
Trigger: CAGGAGGCCGCTGTCGCGCCAGAGAAGCCGCCCGCC...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTGCTCCTCGGCGGCCTTaGTCTCGTCGCTGGCGGGCG +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIAPRRP*SRRWRA
Trigger: CGCCCGCCAGCGACGAGACCAAGGCCGCCGAGGAGC...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR GCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTGCGCTGCCGTTGGCCTaGAGCTCCTCCTTGGCGCCC +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIALPLA*SSSLAP
Trigger: GGGCGCCAAGGAGGAGCTGCAGGCCAACGGCAGCGC...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTTCGGGGTCTCGTTGCTaGGCGAGGGCGTGGCCCCGT +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSISGSRC*ARAWPR
Trigger: ACGGGGCCACGCCCTCGCCCAGCAACGAGACCCCGA...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTCCTTGGTCTCGTCGCTaGCGGGCGGCTTCTCTGGCG +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIPWSRR*RAASLA
Trigger: CGCCAGAGAAGCCGCCCGCCAGCGACGAGACCAAGG...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTGGACTGCACTCGGGCTaGGCCTCCTGTGAGGGGGCT +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIGLHSG*ASCEGA
Trigger: AGCCCCCTCACAGGAGGCCCAGCCCGAGTGCAGTCC...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR GCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTTTTTCGGGGTCTCGTTaGTGGGCGAGGGCGTGGCCC +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIFSGSR*WARAWP
Trigger: GGGCCACGCCCTCGCCCAGCAACGAGACCCCGAAAA...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
56% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTCCCCGTCCTCGGCCTTaGGCGAAGAAGTCGAGGAGG +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIPRPRP*AKKSRR
Trigger: CCTCCTCGACTTCTTCGCCCAAGGCCGAGGACGGGG...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTTCTCCTCCACCTTGCTaGGCTCCTCGGCGGCCTTGG +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSISPPPC*APRRPW
Trigger: CCAAGGCCGCCGAGGAGCCCAGCAAGGTGGAGGAGA...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR GCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTGGCTTCTCCCTTCGCTaGGGTCTTGGAGAACTGGGC +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIGFSLR*GLGELG
Trigger: GCCCAGTTCTCCAAGACCGCAGCGAAGGGAGAAGCC...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR GCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTTTTTCTCCTCCACCTTaGTGGGCTCCTCGGCGGCCT +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIFSPPP*WAPRRP
Trigger: AGGCCGCCGAGGAGCCCAGCAAGGTGGAGGAGAAAA...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
53% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTCAAAGAGCCTCGGGTTaGTGTAACGACGGGGCGAGC +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIQRASG*CNDGAS
Trigger: GCTCGCCCCGTCGTTACACCAACCCGAGGCTCTTTG...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTCCTTCGCTGCGGTCTTaGAGAACTGGGCACCCATGC +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIPSLRS*RTGHPC
Trigger: GCATGGGTGCCCAGTTCTCCAAGACCGCAGCGAAGG...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTCCTGTCCGTTCGCTTTaGAAGGCGACGAGGCCACAG +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIPVRSL*KATRPQ
Trigger: CTGTGGCCTCGTCGCCTTCCAAAGCGAACGGACAGG...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTGCGGTCTTGGAGAACTaGGCACCCATGCTGGCTTCT +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIAVLEN*APMLAS
Trigger: AGAAGCCAGCATGGGTGCCCAGTTCTCCAAGACCGC...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTCCGTTTACCTTCACGTaGCCATTCTCCTGTCCGTTC +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIPFTFT*PFSCPF
Trigger: GAACGGACAGGAGAATGGCCACGTGAAGGTAAACGG...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR TCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTCCTTCTTGTTCTTCTTaGAGGAGAAGCCGCTCAGCT +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIPSCSS*RRSRSA
Trigger: AGCTGAGCGGCTTCTCCTTCAAGAAGAACAAGAAGG...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR GCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTTGGTTGCTAATAAGATaGGGGGTCCAACGCCCAAGT +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIWLLIR*GVQRPS
Trigger: ACTTGGGCGTTGGACCCCGCATCTTATTAGCAACCA...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR GCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTAGAACTGGGCACCCATaGTGGCTTCTTCAACAAAGA +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIRTGHP*WLLQQR
Trigger: TCTTTGTTGAAGAAGCCAGCATGGGTGCCCAGTTCT...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTACTGGGCACCCATGCTaGCTTCTTCAACAAAGAAAC +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSITGHPC*LLQQRN
Trigger: GTTTCTTTGTTGAAGAAGCCAGCATGGGTGCCCAGT...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTATGGAGAAATCTCCCTaGTTGCTAATAAGATGCGGG +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIMEKSP*LLIRCG
Trigger: CCCGCATCTTATTAGCAACCAGGGAGATTTCTCCAT...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTGGGAGGGAAAAAGGGTaGAAAAGTCGAGCACAAAAA +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIGREKG*KSRAQK
Trigger: TTTTTGTGCTCGACTTTTCCACCCTTTTTCCCTCCC...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR GCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTTATCTCACAAAAGCTTaGTCTTTTACTCTGCCGCCT +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIYLTKA*SFTLPP
Trigger: AGGCGGCAGAGTAAAAGAGCAAGCTTTTGTGAGATA...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR TCA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTGGCATGTCCATAGATTaGCAAAGAAAGTTTACACTT +
Preference number: 4 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIGMSID*QRKFTL
Trigger: AAGTGTAAACTTTCTTTGTCAATCTATGGACATGCC...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS CCA 90 bp CGCTGGCGGGCGGCTTCTCTGGCGCGACAGCGGCCTCCTGGGGCTTaGCCTCCTGCGGGTCGCCACCCGCCGCCCCCTCCTCGCCCGCTG +
Preference number: 5 (lower is better)
Translates to: RWRAASLARQRPPGA*PPAGRHPPPPPRPL
Trigger: CAGCGGGCGAGGAGGGGGCGGCGGGTGGCGACCCGCAGGAGGCCAAGCCCCAGGAGGCCGCTGTCGCGCCAGAGAAGCCGCCCGCCAGCG
80% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS CCA 90 bp GTCTCGTCGCTGGCGGGCGGCTTCTCTGGCGCGACAGCGGCCTCCTaGGGCTTGGCCTCCTGCGGGTCGCCACCCGCCGCCCCCTCCTCG +
Preference number: 5 (lower is better)
Translates to: VSSLAGGFSGATAAS*GLASCGSPPAAPSS
Trigger: CGAGGAGGGGGCGGCGGGTGGCGACCCGCAGGAGGCCAAGCCCCAGGAGGCCGCTGTCGCGCCAGAGAAGCCGCCCGCCAGCGACGAGAC
78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS CCA 90 bp TCGGGGTCTCGTTGCTGGGCGAGGGCGTGGCCCCGTCCTCGGCCTTaGGCGAAGAAGTCGAGGAGGCGGCCGACGCGGCCTCTCCCTCCG +
Preference number: 5 (lower is better)
Translates to: SGSRCWARAWPRPRP*AKKSRRRPTRPLPP
Trigger: CGGAGGGAGAGGCCGCGTCGGCCGCCTCCTCGACTTCTTCGCCCAAGGCCGAGGACGGGGCCACGCCCTCGCCCAGCAACGAGACCCCGA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS CCA 90 bp TCTCCTCCACCTTGCTGGGCTCCTCGGCGGCCTTGGTCTCGTCGCTaGCGGGCGGCTTCTCTGGCGCGACAGCGGCCTCCTGGGGCTTGG +
Preference number: 5 (lower is better)
Translates to: SPPPCWAPRRPWSRR*RAASLARQRPPGAW
Trigger: CCAAGCCCCAGGAGGCCGCTGTCGCGCCAGAGAAGCCGCCCGCCAGCGACGAGACCAAGGCCGCCGAGGAGCCCAGCAAGGTGGAGGAGA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS CCA 90 bp CCTCGGCCTTTTTCTCCTCCACCTTGCTGGGCTCCTCGGCGGCCTTaGTCTCGTCGCTGGCGGGCGGCTTCTCTGGCGCGACAGCGGCCT +
Preference number: 5 (lower is better)
Translates to: PRPFSPPPCWAPRRP*SRRWRAASLARQRP
Trigger: AGGCCGCTGTCGCGCCAGAGAAGCCGCCCGCCAGCGACGAGACCAAGGCCGCCGAGGAGCCCAGCAAGGTGGAGGAGAAAAAGGCCGAGG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS GCA 90 bp CACAGCCGCCTCCCCAGGCCTCTCCGCGGCGGCTTCTCCCTTCGCTaGGGTCTTGGAGAACTGGGCACCCATGCTGGCTTCTTCAACAAA +
Preference number: 5 (lower is better)
Translates to: HSRLPRPLRGGFSLR*GLGELGTHAGFFNK
Trigger: TTTGTTGAAGAAGCCAGCATGGGTGCCCAGTTCTCCAAGACCGCAGCGAAGGGAGAAGCCGCCGCGGAGAGGCCTGGGGAGGCGGCTGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS CCA 90 bp CCTCCCCAGGCCTCTCCGCGGCGGCTTCTCCCTTCGCTGCGGTCTTaGAGAACTGGGCACCCATGCTGGCTTCTTCAACAAAGAAACTCA +
Preference number: 5 (lower is better)
Translates to: PPQASPRRLLPSLRS*RTGHPCWLLQQRNS
Trigger: TGAGTTTCTTTGTTGAAGAAGCCAGCATGGGTGCCCAGTTCTCCAAGACCGCAGCGAAGGGAGAAGCCGCCGCGGAGAGGCCTGGGGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CAA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTGGCTCCTCGGCGGCCTaGGTCTCGTCGCTGGCGGGC +
Preference number: 5 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIGSSAA*VSSLAG
Trigger: GCCCGCCAGCGACGAGACCAAGGCCGCCGAGGAGCC...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS CCA 90 bp GGCCTCTCCGCGGCGGCTTCTCCCTTCGCTGCGGTCTTGGAGAACTaGGCACCCATGCTGGCTTCTTCAACAAAGAAACTCAACAGATCC +
Preference number: 5 (lower is better)
Translates to: GLSAAASPFAAVLEN*APMLASSTKKLNRS
Trigger: GGATCTGTTGAGTTTCTTTGTTGAAGAAGCCAGCATGGGTGCCCAGTTCTCCAAGACCGCAGCGAAGGGAGAAGCCGCCGCGGAGAGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CAA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTGCCGGGGCGCTGCCGTaGGCCTGCAGCTCCTCCTTG +
Preference number: 5 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIAGALP*ACSSSL
Trigger: CAAGGAGGAGCTGCAGGCCAACGGCAGCGCCCCGGC...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CAA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTGCCCCGTCCTCGGCCTaGGGCGAAGAAGTCGAGGAG +
Preference number: 5 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIAPSSA*GEEVEE
Trigger: CTCCTCGACTTCTTCGCCCAAGGCCGAGGACGGGGC...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CAA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTTTTTTCGGGGTCTCGTaGCTGGGCGAGGGCGTGGCC +
Preference number: 5 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIFFGVS*LGEGVA
Trigger: GGCCACGCCCTCGCCCAGCAACGAGACCCCGAAAAA...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
56% GC, longest homopolymer 7 nt, total homopolymer stretches 20 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CAA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTCCCTTCGCTGCGGTCTaGGAGAACTGGGCACCCATG +
Preference number: 5 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIPFAAV*ENWAPM
Trigger: CATGGGTGCCCAGTTCTCCAAGACCGCAGCGAAGGG...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CAA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTTCCTGTCCGTTCGCTTaGGAAGGCGACGAGGCCACA +
Preference number: 5 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSISCPFA*EGDEAT
Trigger: TGTGGCCTCGTCGCCTTCCAAAGCGAACGGACAGGA...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CAA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTGAGAAATCTCCCTGGTaGCTAATAAGATGCGGGGTC +
Preference number: 5 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIEKSPW*LIRCGV
Trigger: GACCCCGCATCTTATTAGCAACCAGGGAGATTTCTC...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CAA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTTCCTTCTTGTTCTTCTaGAAGGAGAAGCCGCTCAGC +
Preference number: 5 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSISFLFF*KEKPLS
Trigger: GCTGAGCGGCTTCTCCTTCAAGAAGAACAAGAAGGA...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CAA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTAGCTTGAAAGACTTCTaGAAGGAAAAGCGCTTCTTT +
Preference number: 5 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSISLKDF*KEKRFF
Trigger: AAAGAAGCGCTTTTCCTTCAAGAAGTCTTTCAAGCT...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS-3UTR CAA 90 bp ACCAGTACCTGGCACCACTCCAACAAACAAACGGGGGAGAAAAGTTCTTCGATTGGGCATGTCCATAGATaGACAAAGAAAGTTTACACT +
Preference number: 5 (lower is better)
Translates to: TSTWHHSNKQTGEKSSSIGHVHR*TKKVYT
Trigger: AGTGTAAACTTTCTTTGTCAATCTATGGACATGCCC...AATCGAAGAACTTTTCTCCCCCGTTTGTTTGTTGGAGTGGTGCCAGGTACTGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS CCA 72 bp CTGGCGGGCGGCTTCTCTGGCGCGACAGCGGCCTCCTaGGGCTTGGCCTCCTGCGGGTCGCCACCCGCCGCC +
Preference number: 6 (lower is better)
Translates to: LAGGFSGATAAS*GLASCGSPPAA
Trigger: GGCGGCGGGTGGCGACCCGCAGGAGGCCAAGCCCCAGGAGGCCGCTGTCGCGCCAGAGAAGCCGCCCGCCAG
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS GCA 72 bp TCCTCCTTGTCGGCGGCCGGGGCGCTGCCGTTGGCCTaGAGCTCCTCCTTGGCGCCCGACTCGGCGGCCGCG +
Preference number: 6 (lower is better)
Translates to: SSLSAAGALPLA*SSSLAPDSAAA
Trigger: CGCGGCCGCCGAGTCGGGCGCCAAGGAGGAGCTGCAGGCCAACGGCAGCGCCCCGGCCGCCGACAAGGAGGA
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS CCA 72 bp CGTTGCTGGGCGAGGGCGTGGCCCCGTCCTCGGCCTTaGGCGAAGAAGTCGAGGAGGCGGCCGACGCGGCCT +
Preference number: 6 (lower is better)
Translates to: RCWARAWPRPRP*AKKSRRRPTRP
Trigger: AGGCCGCGTCGGCCGCCTCCTCGACTTCTTCGCCCAAGGCCGAGGACGGGGCCACGCCCTCGCCCAGCAACG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS CAA 72 bp TCGTTGCTGGGCGAGGGCGTGGCCCCGTCCTCGGCCTaGGGCGAAGAAGTCGAGGAGGCGGCCGACGCGGCC +
Preference number: 6 (lower is better)
Translates to: SLLGEGVAPSSA*GEEVEEAADAA
Trigger: GGCCGCGTCGGCCGCCTCCTCGACTTCTTCGCCCAAGGCCGAGGACGGGGCCACGCCCTCGCCCAGCAACGA
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS CCA 72 bp CCTTGCTGGGCTCCTCGGCGGCCTTGGTCTCGTCGCTaGCGGGCGGCTTCTCTGGCGCGACAGCGGCCTCCT +
Preference number: 6 (lower is better)
Translates to: PCWAPRRPWSRR*RAASLARQRPP
Trigger: AGGAGGCCGCTGTCGCGCCAGAGAAGCCGCCCGCCAGCGACGAGACCAAGGCCGCCGAGGAGCCCAGCAAGG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS CAA 90 bp TTCGGGGTCTCGTTGCTGGGCGAGGGCGTGGCCCCGTCCTCGGCCTaGGGCGAAGAAGTCGAGGAGGCGGCCGACGCGGCCTCTCCCTCC +
Preference number: 6 (lower is better)
Translates to: FGVSLLGEGVAPSSA*GEEVEEAADAASPS
Trigger: GGAGGGAGAGGCCGCGTCGGCCGCCTCCTCGACTTCTTCGCCCAAGGCCGAGGACGGGGCCACGCCCTCGCCCAGCAACGAGACCCCGAA
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS CCA 72 bp CCCCGGCCTCCTCGGCCTTTTTCTCCTCCACCTTGCTaGGCTCCTCGGCGGCCTTGGTCTCGTCGCTGGCGG +
Preference number: 6 (lower is better)
Translates to: PRPPRPFSPPPC*APRRPWSRRWR
Trigger: CCGCCAGCGACGAGACCAAGGCCGCCGAGGAGCCCAGCAAGGTGGAGGAGAAAAAGGCCGAGGAGGCCGGGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS CAA 90 bp TCCTCGGCCTTTTTCTCCTCCACCTTGCTGGGCTCCTCGGCGGCCTaGGTCTCGTCGCTGGCGGGCGGCTTCTCTGGCGCGACAGCGGCC +
Preference number: 6 (lower is better)
Translates to: SSAFFSSTLLGSSAA*VSSLAGGFSGATAA
Trigger: GGCCGCTGTCGCGCCAGAGAAGCCGCCCGCCAGCGACGAGACCAAGGCCGCCGAGGAGCCCAGCAAGGTGGAGGAGAAAAAGGCCGAGGA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS GCA 72 bp CTCCCCAGGCCTCTCCGCGGCGGCTTCTCCCTTCGCTaGGGTCTTGGAGAACTGGGCACCCATGCTGGCTTC +
Preference number: 6 (lower is better)
Translates to: LPRPLRGGFSLR*GLGELGTHAGF
Trigger: GAAGCCAGCATGGGTGCCCAGTTCTCCAAGACCGCAGCGAAGGGAGAAGCCGCCGCGGAGAGGCCTGGGGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS CCA 72 bp TTTTCTCCTCCACCTTGCTGGGCTCCTCGGCGGCCTTaGTCTCGTCGCTGGCGGGCGGCTTCTCTGGCGCGA +
Preference number: 6 (lower is better)
Translates to: FSPPPCWAPRRP*SRRWRAASLAR
Trigger: TCGCGCCAGAGAAGCCGCCCGCCAGCGACGAGACCAAGGCCGCCGAGGAGCCCAGCAAGGTGGAGGAGAAAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS CAA 72 bp TTTTTCTCCTCCACCTTGCTGGGCTCCTCGGCGGCCTaGGTCTCGTCGCTGGCGGGCGGCTTCTCTGGCGCG +
Preference number: 6 (lower is better)
Translates to: FFSSTLLGSSAA*VSSLAGGFSGA
Trigger: CGCGCCAGAGAAGCCGCCCGCCAGCGACGAGACCAAGGCCGCCGAGGAGCCCAGCAAGGTGGAGGAGAAAAA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS CAA 72 bp GGCCTCTCCGCGGCGGCTTCTCCCTTCGCTGCGGTCTaGGAGAACTGGGCACCCATGCTGGCTTCTTCAACA +
Preference number: 6 (lower is better)
Translates to: GLSAAASPFAAV*ENWAPMLASST
Trigger: TGTTGAAGAAGCCAGCATGGGTGCCCAGTTCTCCAAGACCGCAGCGAAGGGAGAAGCCGCCGCGGAGAGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS CAA 90 bp GCCTCCCCAGGCCTCTCCGCGGCGGCTTCTCCCTTCGCTGCGGTCTaGGAGAACTGGGCACCCATGCTGGCTTCTTCAACAAAGAAACTC +
Preference number: 6 (lower is better)
Translates to: ASPGLSAAASPFAAV*ENWAPMLASSTKKL
Trigger: GAGTTTCTTTGTTGAAGAAGCCAGCATGGGTGCCCAGTTCTCCAAGACCGCAGCGAAGGGAGAAGCCGCCGCGGAGAGGCCTGGGGAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS CCA 72 bp GCCTCTCCGCGGCGGCTTCTCCCTTCGCTGCGGTCTTaGAGAACTGGGCACCCATGCTGGCTTCTTCAACAA +
Preference number: 6 (lower is better)
Translates to: ASPRRLLPSLRS*RTGHPCWLLQQ
Trigger: TTGTTGAAGAAGCCAGCATGGGTGCCCAGTTCTCCAAGACCGCAGCGAAGGGAGAAGCCGCCGCGGAGAGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS CCA 72 bp CAACAGATCCAAGAGGGGAAACAAAGAGCCTCGGGTTaGTGTAACGACGGGGCGAGCAGCAGCAGCAGCGGC +
Preference number: 6 (lower is better)
Translates to: QQIQEGKQRASG*CNDGASSSSSG
Trigger: GCCGCTGCTGCTGCTGCTCGCCCCGTCGTTACACCAACCCGAGGCTCTTTGTTTCCCCTCTTGGATCTGTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS CCA 72 bp GCGGCGGCTTCTCCCTTCGCTGCGGTCTTGGAGAACTaGGCACCCATGCTGGCTTCTTCAACAAAGAAACTC +
Preference number: 6 (lower is better)
Translates to: AAASPFAAVLEN*APMLASSTKKL
Trigger: GAGTTTCTTTGTTGAAGAAGCCAGCATGGGTGCCCAGTTCTCCAAGACCGCAGCGAAGGGAGAAGCCGCCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612661.2
CDS CCA 72 bp CCTTCGCTGCGGTCTTGGAGAACTGGGCACCCATGCTaGCTTCTTCAACAAAGAAACTCAACAGATCCAAGA +
Preference number: 6 (lower is better)
Translates to: PSLRSWRTGHPC*LLQQRNSTDPR
Trigger: TCTTGGATCTGTTGAGTTTCTTTGTTGAAGAAGCCAGCATGGGTGCCCAGTTCTCCAAGACCGCAGCGAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612661.2