Pregenerated sensors for MAPT-IT1 (Homo sapiens)
Ensembl gene IDs: ENSG00000279685Ensembl transcript IDs: ENST00000624111.2, ENST00000626958.1, ENST00000633806.1
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CGCGCGCAGAGCCAGGATAGAGTTTCCTACGAAGGACCGTCCCCCTaGGGTTCCTCCATTAACAGCGCCCCCGGCCTTGCCCACCGCAGC | + |
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Preference number: 5 (lower is better) Translates to: RAQSQDRVSYEGPSP*GSSINSAPGLAHRS Trigger: GCTGCGGTGGGCAAGGCCGGGGGCGCTGTTAATGGAGGAACCTCAGGGGGACGGTCCTTCGTAGGAAACTCTATCCTGGCTCTGCGCGCG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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| CDS TCA 90 bp | CTCAAATTGGTCCTGCTGAGCCTGGAGCCTGAGCACGCAGAGGGGTaGGCTAGGCAGTCGCTGTCGGAGCCCCCATCATCCCTTCCAGCC | + |
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Preference number: 5 (lower is better) Translates to: LKLVLLSLEPEHAEG*ARQSLSEPPSSLPA Trigger: GGCTGGAAGGGATGATGGGGGCTCCGACAGCGACTGCCTAGCTCACCCCTCTGCGTGCTCAGGCTCCAGGCTCAGCAGGACCAATTTGAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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| CDS CCA 90 bp | GAATGTAAGAGCTCCCGCCTGCTGGGAATGGGGAGGAGTCGTCGATaGCCCCAGGATCCGTGCCCAGACATTTCCAGAGGCGCACCGGCT | + |
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Preference number: 5 (lower is better) Translates to: ECKSSRLLGMGRSRR*PQDPCPDISRGAPA Trigger: AGCCGGTGCGCCTCTGGAAATGTCTGGGCACGGATCCTGGGGCCATCGACGACTCCTCCCCATTCCCAGCAGGCGGGAGCTCTTACATTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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| CDS CCA 90 bp | GAGGGGTCACTCGCTCGGAATGTAAGAGCTCCCGCCTGCTGGGAATaGGGAGGAGTCGTCGATGGCCCCAGGATCCGTGCCCAGACATTT | + |
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Preference number: 5 (lower is better) Translates to: EGSLARNVRAPACWE*GGVVDGPRIRAQTF Trigger: AAATGTCTGGGCACGGATCCTGGGGCCATCGACGACTCCTCCCCATTCCCAGCAGGCGGGAGCTCTTACATTCCGAGCGAGTGACCCCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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| CDS TCA 90 bp | TCTGAGACGGAGGTTTGGAGTTACAGGTGTGTGAGCGCCAGAGGGTaGGAGGGGTCACTCGCTCGGAATGTAAGAGCTCCCGCCTGCTGG | + |
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Preference number: 5 (lower is better) Translates to: SETEVWSYRCVSARG*EGSLARNVRAPACW Trigger: CCAGCAGGCGGGAGCTCTTACATTCCGAGCGAGTGACCCCTCTCACCCTCTGGCGCTCACACACCTGTAACTCCAAACCTCCGTCTCAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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| CDS GCA 90 bp | AGTGGGCTCAGAAAGATGGGTGTGGCCGAAGCACCAGTAACCTTATaGCCCTTCCTCACATTCTCCGGCCAGGCGAAGCAACAGGGCGTA | + |
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Preference number: 5 (lower is better) Translates to: SGLRKMGVAEAPVTL*PFLTFSGQAKQQGV Trigger: TACGCCCTGTTGCTTCGCCTGGCCGGAGAATGTGAGGAAGGGGCATAAGGTTACTGGTGCTTCGGCCACACCCATCTTTCTGAGCCCACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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| CDS CCA 90 bp | TTGCCCACCGCAGCGGCCCCACCAAAGCGCCAACACATTTCAAAATaGAGCGAAATCGCAGAAGCGCGGAGTGCGCTTTGTTCCCAGCAT | + |
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Preference number: 5 (lower is better) Translates to: LPTAAAPPKRQHISK*SEIAEARSALCSQH Trigger: ATGCTGGGAACAAAGCGCACTCCGCGCTTCTGCGATTTCGCTCCATTTTGAAATGTGTTGGCGCTTTGGTGGGGCCGCTGCGGTGGGCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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| CDS TCA 90 bp | CACAATCTTATCCCATCTCCAGGCTGGCACCGACCTCCAAGGGCATaGGGGTCAAAGGGCACGTTTAATAGAAAGGCCACTTTTTCCAAC | + |
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Preference number: 5 (lower is better) Translates to: HNLIPSPGWHRPPRA*GSKGTFNRKATFSN Trigger: GTTGGAAAAAGTGGCCTTTCTATTAAACGTGCCCTTTGACCCTCATGCCCTTGGAGGTCGGTGCCAGCCTGGAGATGGGATAAGATTGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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| CDS TCA 90 bp | CTATATAAACATCTGTTAGAGAAGCAAACTTGGCCAAGGAATGTATaGGCTTCAAGAGTCACTCCGGACCTGCGTAGCAGGGGTGGGGGC | + |
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Preference number: 5 (lower is better) Translates to: LYKHLLEKQTWPRNV*ASRVTPDLRSRGGG Trigger: GCCCCCACCCCTGCTACGCAGGTCCGGAGTGACTCTTGAAGCTCATACATTCCTTGGCCAAGTTTGCTTCTCTAACAGATGTTTATATAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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| CDS GCA 72 bp | GAAGCTTCCCGGCGCCGGCAGACTCCGAGACGAGGCTaGGCGCGGTCACGCCCGTTCCATGCGTGCCGGGGG | + |
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Preference number: 6 (lower is better) Translates to: EASRRRQTPRRG*ARSRPFHACRG Trigger: CCCCCGGCACGCATGGAACGGGCGTGACCGCGCGCAGCCTCGTCTCGGAGTCTGCCGGCGCCGGGAAGCTTC 75% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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| CDS CCA 72 bp | CCACCCATCCCCGGATGGGTAGCCAGCGTCCCTCGCTaGGCAACCTGGTGTGGCGTGGCCCTCAGGACACTT | + |
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Preference number: 6 (lower is better) Translates to: PPIPGWVASVPR*ATWCGVALRTL Trigger: AAGTGTCCTGAGGGCCACGCCACACCAGGTTGCCCAGCGAGGGACGCTGGCTACCCATCCGGGGATGGGTGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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| CDS CCA 72 bp | TCCAGCCCTCTACGCCACCGTCAAGGAGGGTCGGCCTaGTCCCGGGCGGGCAGCCAAGCCATTCCCCAGAAA | + |
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Preference number: 6 (lower is better) Translates to: SSPLRHRQGGSA*SRAGSQAIPQK Trigger: TTTCTGGGGAATGGCTTGGCTGCCCGCCCGGGACCAGGCCGACCCTCCTTGACGGTGGCGTAGAGGGCTGGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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| CDS CCA 72 bp | ATGGGTAGCCAGCGTCCCTCGCTGGGCAACCTGGTGTaGCGTGGCCCTCAGGACACTTGGGGTGTAGGGAGG | + |
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Preference number: 6 (lower is better) Translates to: MGSQRPSLGNLV*RGPQDTWGVGR Trigger: CCTCCCTACACCCCAAGTGTCCTGAGGGCCACGCCACACCAGGTTGCCCAGCGAGGGACGCTGGCTACCCAT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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| CDS CCA 72 bp | AGCTCCCGCCTGCTGGGAATGGGGAGGAGTCGTCGATaGCCCCAGGATCCGTGCCCAGACATTTCCAGAGGC | + |
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Preference number: 6 (lower is better) Translates to: SSRLLGMGRSRR*PQDPCPDISRG Trigger: GCCTCTGGAAATGTCTGGGCACGGATCCTGGGGCCATCGACGACTCCTCCCCATTCCCAGCAGGCGGGAGCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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| CDS CCA 72 bp | CTCGCTCGGAATGTAAGAGCTCCCGCCTGCTGGGAATaGGGAGGAGTCGTCGATGGCCCCAGGATCCGTGCC | + |
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Preference number: 6 (lower is better) Translates to: LARNVRAPACWE*GGVVDGPRIRA Trigger: GGCACGGATCCTGGGGCCATCGACGACTCCTCCCCATTCCCAGCAGGCGGGAGCTCTTACATTCCGAGCGAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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| CDS GCA 72 bp | GGAATGGGGAGGAGTCGTCGATGGCCCCAGGATCCGTaGCCAGACATTTCCAGAGGCGCACCGGCTGGTTCA | + |
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Preference number: 6 (lower is better) Translates to: GMGRSRRWPQDP*PDISRGAPAGS Trigger: TGAACCAGCCGGTGCGCCTCTGGAAATGTCTGGGCACGGATCCTGGGGCCATCGACGACTCCTCCCCATTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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| CDS CCA 72 bp | TCTACAGACAAAGCAAAGAGCCCCCGAAGAAGGTGCTaGGCGAACGCCCCCAGTGCTCACGCCCGCAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: STDKAKSPRRRC*ANAPSAHARSS Trigger: GCTGCTGCGGGCGTGAGCACTGGGGGCGTTCGCCCAGCACCTTCTTCGGGGGCTCTTTGCTTTGTCTGTAGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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| CDS CCA 72 bp | GGATCCGTGCCCAGACATTTCCAGAGGCGCACCGGCTaGTTCAGCACCCCACCGTCATCCGCGCAAAAGCTG | + |
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Preference number: 6 (lower is better) Translates to: GSVPRHFQRRTG*FSTPPSSAQKL Trigger: CAGCTTTTGCGCGGATGACGGTGGGGTGCTGAACCAGCCGGTGCGCCTCTGGAAATGTCTGGGCACGGATCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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| CDS TCA 72 bp | AGCCAGGATAGAGTTTCCTACGAAGGACCGTCCCCCTaGGGTTCCTCCATTAACAGCGCCCCCGGCCTTGCC | + |
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Preference number: 6 (lower is better) Translates to: SQDRVSYEGPSP*GSSINSAPGLA Trigger: GGCAAGGCCGGGGGCGCTGTTAATGGAGGAACCTCAGGGGGACGGTCCTTCGTAGGAAACTCTATCCTGGCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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| CDS CCA 72 bp | ATCGCAGAAGCGCGGAGTGCGCTTTGTTCCCAGCATTaGGCTAAATGCGCTCATCCCCACCGGGCTCCCTTT | + |
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Preference number: 6 (lower is better) Translates to: IAEARSALCSQH*AKCAHPHRAPF Trigger: AAAGGGAGCCCGGTGGGGATGAGCGCATTTAGCCCAATGCTGGGAACAAAGCGCACTCCGCGCTTCTGCGAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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| CDS TCA 72 bp | GAGGTTTGGAGTTACAGGTGTGTGAGCGCCAGAGGGTaGGAGGGGTCACTCGCTCGGAATGTAAGAGCTCCC | + |
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Preference number: 6 (lower is better) Translates to: EVWSYRCVSARG*EGSLARNVRAP Trigger: GGGAGCTCTTACATTCCGAGCGAGTGACCCCTCTCACCCTCTGGCGCTCACACACCTGTAACTCCAAACCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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| CDS TCA 72 bp | ACCATTCTGAGACGGAGGTTTGGAGTTACAGGTGTGTaGGCGCCAGAGGGTGAGAGGGGTCACTCGCTCGGA | + |
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Preference number: 6 (lower is better) Translates to: TILRRRFGVTGV*APEGERGHSLG Trigger: TCCGAGCGAGTGACCCCTCTCACCCTCTGGCGCTCACACACCTGTAACTCCAAACCTCCGTCTCAGAATGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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| CDS CCA 72 bp | GCAGCGGCCCCACCAAAGCGCCAACACATTTCAAAATaGAGCGAAATCGCAGAAGCGCGGAGTGCGCTTTGT | + |
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Preference number: 6 (lower is better) Translates to: AAAPPKRQHISK*SEIAEARSALC Trigger: ACAAAGCGCACTCCGCGCTTCTGCGATTTCGCTCCATTTTGAAATGTGTTGGCGCTTTGGTGGGGCCGCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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| CDS TCA 72 bp | CCAGCAAGCCTCGAGATCCAACAATGGGCTCGGAAATaGGGAGCGAAAAAGGAAAGAGAGGCGCATGGGCGT | + |
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Preference number: 6 (lower is better) Translates to: PASLEIQQWARK*GAKKEREAHGR Trigger: ACGCCCATGCGCCTCTCTTTCCTTTTTCGCTCCTCATTTCCGAGCCCATTGTTGGATCTCGAGGCTTGCTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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| CDS GCA 72 bp | AGAAAGATGGGTGTGGCCGAAGCACCAGTAACCTTATaGCCCTTCCTCACATTCTCCGGCCAGGCGAAGCAA | + |
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Preference number: 6 (lower is better) Translates to: RKMGVAEAPVTL*PFLTFSGQAKQ Trigger: TTGCTTCGCCTGGCCGGAGAATGTGAGGAAGGGGCATAAGGTTACTGGTGCTTCGGCCACACCCATCTTTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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| CDS TCA 72 bp | CATCTGTTAGAGAAGCAAACTTGGCCAAGGAATGTATaGGCTTCAAGAGTCACTCCGGACCTGCGTAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: HLLEKQTWPRNV*ASRVTPDLRSR Trigger: CCTGCTACGCAGGTCCGGAGTGACTCTTGAAGCTCATACATTCCTTGGCCAAGTTTGCTTCTCTAACAGATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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| CDS CAA 90 bp | TTCCCCAAATCGTCCAAAGGTGAACCCAAGAGCCAAGCCAGGTTATaGCTATATAAACATCTGTTAGAGAAGCAAACTTGGCCAAGGAAT | + |
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Preference number: 6 (lower is better) Translates to: FPKSSKGEPKSQARL*LYKHLLEKQTWPRN Trigger: ATTCCTTGGCCAAGTTTGCTTCTCTAACAGATGTTTATATAGCAATAACCTGGCTTGGCTCTTGGGTTCACCTTTGGACGATTTGGGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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| CDS CAA 72 bp | TCGTCCAAAGGTGAACCCAAGAGCCAAGCCAGGTTATaGCTATATAAACATCTGTTAGAGAAGCAAACTTGG | + |
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Preference number: 6 (lower is better) Translates to: SSKGEPKSQARL*LYKHLLEKQTW Trigger: CCAAGTTTGCTTCTCTAACAGATGTTTATATAGCAATAACCTGGCTTGGCTCTTGGGTTCACCTTTGGACGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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| CDS CAA 72 bp | AGTTTTCTAACAATTTATGGGCAGTATCCATTTCTTTaGTTCCTGTCGGAGGAGCAATGCCTGATATTAGAA | + |
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Preference number: 6 (lower is better) Translates to: SFLTIYGQYPFL*FLSEEQCLILE Trigger: TTCTAATATCAGGCATTGCTCCTCCGACAGGAACAAAAGAAATGGATACTGCCCATAAATTGTTAGAAAACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000624111.2 ENST00000626958.1 ENST00000633806.1 |
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