Pregenerated sensors for MANEA-DT (Homo sapiens)

Ensembl gene IDs: ENSG00000261366

Ensembl transcript IDs: ENST00000564541.1

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CAACAGAGCCTCAGAAGACCGTTTCTAAAGGCAGTGAGTTCTACTTaGAGAAATAGGGCGGGAGTGCAGTCTGACTCCAATCCACACGTC	+
Preference number: 5 (lower is better) Translates to: QQSLRRPFLKAVSST*RNRAGVQSDSNPHV Trigger: GACGTGTGGATTGGAGTCAGACTGCACTCCCGCCCTATTTCTGCAAGTAGAACTCACTGCCTTTAGAAACGGTCTTCTGAGGCTCTGTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564541.1
CDS GCA 72 bp	CTCAGAAGACCGTTTCTAAAGGCAGTGAGTTCTACTTaGAGAAATAGGGCGGGAGTGCAGTCTGACTCCAAT	+
Preference number: 6 (lower is better) Translates to: LRRPFLKAVSST*RNRAGVQSDSN Trigger: ATTGGAGTCAGACTGCACTCCCGCCCTATTTCTGCAAGTAGAACTCACTGCCTTTAGAAACGGTCTTCTGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564541.1
CDS CAA 72 bp	GCCCTTATGAAACTGTTCACATCAGCAAGTTCTAGCTaGAATAAGGACTTCCTGTTACTATGTAACCAAACA	+
Preference number: 6 (lower is better) Translates to: ALMKLFTSASSS*NKDFLLLCNQT Trigger: TGTTTGGTTACATAGTAACAGGAAGTCCTTATTCAAGCTAGAACTTGCTGATGTGAACAGTTTCATAAGGGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564541.1
CDS GCA 72 bp	CTTAAAAAGTCTAACAATAGCATAAGGGTAACGATGTaGCAGTCTAGTTTATGGGAAATGGACTTGTATACA	+
Preference number: 6 (lower is better) Translates to: LKKSNNSIRVTM*QSSLWEMDLYT Trigger: TGTATACAAGTCCATTTCCCATAAACTAGACTGGCACATCGTTACCCTTATGCTATTGTTAGACTTTTTAAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000564541.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu