Pregenerated sensors for MALL (Homo sapiens)
Ensembl gene IDs: ENSG00000144063Ensembl transcript IDs: ENST00000272462.3, ENST00000424988.1, ENST00000427178.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | GGAGAATGGCGGGAACCCGGGAGGCGGAGCCTGCAGTaGGTGGAGATCGCGTCACTGCACTCCAGCCTTGGA | + |
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Preference number: 3 (lower is better) Translates to: GEWREPGRRSLQ*VEIASLHSSLG Trigger: TCCAAGGCTGGAGTGCAGTGACGCGATCTCCACTCACTGCAGGCTCCGCCTCCCGGGTTCCCGCCATTCTCC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000272462.3 ENST00000427178.1 |
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| CDS GCA 90 bp | CGTCGGACGGGGCGTAGCTGGTGGCGGGCGGGTCGGGCGAGGCCATaGTGTCAGCCCCTGCCGGGTGCTCCGCGGCAGCTCGCCCGCGCG | + |
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Preference number: 5 (lower is better) Translates to: RRTGRSWWRAGRARP*CQPLPGAPRQLARA Trigger: CGCGCGGGCGAGCTGCCGCGGAGCACCCGGCAGGGGCTGACAGCATGGCCTCGCCCGACCCGCCCGCCACCAGCTACGCCCCGTCCGACG 80% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000427178.1 |
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| CDS GCA 90 bp | GTAGCTGGTGGCGGGCGGGTCGGGCGAGGCCATGCTGTCAGCCCCTaGCGGGTGCTCCGCGGCAGCTCGCCCGCGCGCAGCCTGTCAAAT | + |
|
Preference number: 5 (lower is better) Translates to: VAGGGRVGRGHAVSP*RVLRGSSPARSLSN Trigger: ATTTGACAGGCTGCGCGCGGGCGAGCTGCCGCGGAGCACCCGGCAGGGGCTGACAGCATGGCCTCGCCCGACCCGCCCGCCACCAGCTAC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000427178.1 |
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| CDS GCA 90 bp | GTGGCGGGCGGGTCGGGCGAGGCCATGCTGTCAGCCCCTGCCGGGTaGTCCGCGGCAGCTCGCCCGCGCGCAGCCTGTCAAATATCACCT | + |
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Preference number: 5 (lower is better) Translates to: VAGGSGEAMLSAPAG*SAAARPRAACQISP Trigger: AGGTGATATTTGACAGGCTGCGCGCGGGCGAGCTGCCGCGGAGCACCCGGCAGGGGCTGACAGCATGGCCTCGCCCGACCCGCCCGCCAC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000427178.1 |
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| CDS CCA 90 bp | CAGCCGAGCAGGTCCTTCCACTCGCTGCAGCCAGCAGATCCTCAGTaGGCGGCCCAGCGGCATCGGATGGCTCTGCCTGGCCGGCGGGGG | + |
|
Preference number: 5 (lower is better) Translates to: QPSRSFHSLQPADPQ*AAQRHRMALPGRRG Trigger: CCCCCGCCGGCCAGGCAGAGCCATCCGATGCCGCTGGGCCGCCCACTGAGGATCTGCTGGCTGCAGCGAGTGGAAGGACCTGCTCGGCTG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427178.1 |
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| CDS TCA 90 bp | AGAACCCAAATATCAGCTCGGGCAGGAAGAAGGCGAAAGGGATGGTaGGGAACAGCGCGACCCCCGAGGGCACGTCGGACGGGGCGTAGC | + |
|
Preference number: 5 (lower is better) Translates to: RTQISARAGRRRKGW*GTARPPRARRTGRS Trigger: GCTACGCCCCGTCCGACGTGCCCTCGGGGGTCGCGCTGTTCCTCACCATCCCTTTCGCCTTCTTCCTGCCCGAGCTGATATTTGGGTTCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000272462.3 |
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| CDS GCA 72 bp | GGGCGTAGCTGGTGGCGGGCGGGTCGGGCGAGGCCATaGTGTCAGCCCCTGCCGGGTGCTCCGCGGCAGCTC | + |
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Preference number: 6 (lower is better) Translates to: GRSWWRAGRARP*CQPLPGAPRQL Trigger: GAGCTGCCGCGGAGCACCCGGCAGGGGCTGACAGCATGGCCTCGCCCGACCCGCCCGCCACCAGCTACGCCC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000427178.1 |
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| CDS CCA 72 bp | CGACCCCCGAGGGCACGTCGGACGGGGCGTAGCTGGTaGCGGGCGGGTCGGGCGAGGCCATGCTGTCAGCCC | + |
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Preference number: 6 (lower is better) Translates to: RPPRARRTGRSW*RAGRARPCCQP Trigger: GGGCTGACAGCATGGCCTCGCCCGACCCGCCCGCCACCAGCTACGCCCCGTCCGACGTGCCCTCGGGGGTCG 78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000272462.3 ENST00000424988.1 ENST00000427178.1 |
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| CDS CCA 72 bp | GCGCGACCCCCGAGGGCACGTCGGACGGGGCGTAGCTaGTGGCGGGCGGGTCGGGCGAGGCCATGCTGTCAG | + |
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Preference number: 6 (lower is better) Translates to: ARPPRARRTGRS*WRAGRARPCCQ Trigger: CTGACAGCATGGCCTCGCCCGACCCGCCCGCCACCAGCTACGCCCCGTCCGACGTGCCCTCGGGGGTCGCGC 78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000272462.3 ENST00000424988.1 ENST00000427178.1 |
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| CDS GCA 72 bp | GGGTCGGGCGAGGCCATGCTGTCAGCCCCTGCCGGGTaGTCCGCGGCAGCTCGCCCGCGCGCAGCCTGTCAA | + |
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Preference number: 6 (lower is better) Translates to: GSGEAMLSAPAG*SAAARPRAACQ Trigger: TTGACAGGCTGCGCGCGGGCGAGCTGCCGCGGAGCACCCGGCAGGGGCTGACAGCATGGCCTCGCCCGACCC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000427178.1 |
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| CDS CCA 72 bp | AGGTCCTTCCACTCGCTGCAGCCAGCAGATCCTCAGTaGGCGGCCCAGCGGCATCGGATGGCTCTGCCTGGC | + |
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Preference number: 6 (lower is better) Translates to: RSFHSLQPADPQ*AAQRHRMALPG Trigger: GCCAGGCAGAGCCATCCGATGCCGCTGGGCCGCCCACTGAGGATCTGCTGGCTGCAGCGAGTGGAAGGACCT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427178.1 |
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| CDS GCA 72 bp | AGCTCGCCCGCGCGCAGCCTGTCAAATATCACCTCCTaGCCGACACACCCATCGGACGTCGCCTGGGAGGGA | + |
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Preference number: 6 (lower is better) Translates to: SSPARSLSNITS*PTHPSDVAWEG Trigger: TCCCTCCCAGGCGACGTCCGATGGGTGTGTCGGGCAGGAGGTGATATTTGACAGGCTGCGCGCGGGCGAGCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427178.1 |
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