Pregenerated sensors for MALAT1 (Homo sapiens)
Ensembl gene IDs: ENSG00000251562Ensembl transcript IDs: ENST00000508832.2, ENST00000534336.1, ENST00000610481.1, ENST00000610851.1, ENST00000612781.1, ENST00000613376.1, ENST00000616527.4, ENST00000616691.1, ENST00000617489.1, ENST00000618132.1, ENST00000618227.1, ENST00000618925.1, ENST00000619449.2, ENST00000620465.4
Found 108 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CCTGGGCTCCCGGAGGCGTCAGAGGGGACCTGCCTTCAGGCGAGCTaGGGCTTCCCGGCGCCGGGCTTCTGCGTTGCTAAAATGGCGCTG | + |
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Preference number: 5 (lower is better) Translates to: PGLPEASEGTCLQAS*GFPAPGFCVAKMAL Trigger: CAGCGCCATTTTAGCAACGCAGAAGCCCGGCGCCGGGAAGCCTCAGCTCGCCTGAAGGCAGGTCCCCTCTGACGCCTCCGGGAGCCCAGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS CCA 90 bp | ATAGCAGCACAACTCGTCGCTGCGTCCCAAGGACTCTGGGAAACCTaGGCTCCCGGAGGCGTCAGAGGGGACCTGCCTTCAGGCGAGCTG | + |
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Preference number: 5 (lower is better) Translates to: IAAQLVAASQGLWET*APGGVRGDLPSGEL Trigger: CAGCTCGCCTGAAGGCAGGTCCCCTCTGACGCCTCCGGGAGCCCAGGTTTCCCAGAGTCCTTGGGACGCAGCGACGAGTTGTGCTGCTAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS GCA 90 bp | TTGGCACACTGGCATGCTGGTCTAGGATCCTCTACGCACAACGCCTaGTCGCCTCCTCCGTGTGGTTGCCAAGCCAAGCCGCCTGCTACC | + |
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Preference number: 5 (lower is better) Translates to: LAHWHAGLGSSTHNA*SPPPCGCQAKPPAT Trigger: GGTAGCAGGCGGCTTGGCTTGGCAACCACACGGAGGAGGCGAGCAGGCGTTGTGCGTAGAGGATCCTAGACCAGCATGCCAGTGTGCCAA 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS CCA 90 bp | ACAGCTAAGATAGCAGCACAACTCGTCGCTGCGTCCCAAGGACTCTaGGAAACCTGGGCTCCCGGAGGCGTCAGAGGGGACCTGCCTTCA | + |
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Preference number: 5 (lower is better) Translates to: TAKIAAQLVAASQGL*ETWAPGGVRGDLPS Trigger: TGAAGGCAGGTCCCCTCTGACGCCTCCGGGAGCCCAGGTTTCCCAGAGTCCTTGGGACGCAGCGACGAGTTGTGCTGCTATCTTAGCTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS CCA 90 bp | TTACCAACCACTCGCTTTCCCTGTGGCCTTGGCACACTGGCATGCTaGTCTAGGATCCTCTACGCACAACGCCTGCTCGCCTCCTCCGTG | + |
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Preference number: 5 (lower is better) Translates to: LPTTRFPCGLGTLAC*SRILYAQRLLASSV Trigger: CACGGAGGAGGCGAGCAGGCGTTGTGCGTAGAGGATCCTAGACCAGCATGCCAGTGTGCCAAGGCCACAGGGAAAGCGAGTGGTTGGTAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS GCA 90 bp | CAACGCCTGCTCGCCTCCTCCGTGTGGTTGCCAAGCCAAGCCGCCTaGTACCTTCATCACCAAATTGCACTCGCTCCTTCCTGGAATCCT | + |
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Preference number: 5 (lower is better) Translates to: QRLLASSVWLPSQAA*YLHHQIALAPSWNP Trigger: AGGATTCCAGGAAGGAGCGAGTGCAATTTGGTGATGAAGGTAGCAGGCGGCTTGGCTTGGCAACCACACGGAGGAGGCGAGCAGGCGTTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000534336.1 ENST00000610481.1 ENST00000619449.2 |
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| CDS GCA 90 bp | CTAGGATCCTCTACGCACAACGCCTGCTCGCCTCCTCCGTGTGGTTaGCAAGCCAAGCCGCCTGCTACCTTCATCACCAAATTGCACTCG | + |
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Preference number: 5 (lower is better) Translates to: LGSSTHNACSPPPCG*QAKPPATFITKLHS Trigger: CGAGTGCAATTTGGTGATGAAGGTAGCAGGCGGCTTGGCTTGGCAACCACACGGAGGAGGCGAGCAGGCGTTGTGCGTAGAGGATCCTAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS CCA 90 bp | TGGTCTAGGATCCTCTACGCACAACGCCTGCTCGCCTCCTCCGTGTaGTTGCCAAGCCAAGCCGCCTGCTACCTTCATCACCAAATTGCA | + |
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Preference number: 5 (lower is better) Translates to: WSRILYAQRLLASSV*LPSQAACYLHHQIA Trigger: TGCAATTTGGTGATGAAGGTAGCAGGCGGCTTGGCTTGGCAACCACACGGAGGAGGCGAGCAGGCGTTGTGCGTAGAGGATCCTAGACCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS CCA 90 bp | ACGGATTTTTACCAACCACTCGCTTTCCCTGTGGCCTTGGCACACTaGCATGCTGGTCTAGGATCCTCTACGCACAACGCCTGCTCGCCT | + |
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Preference number: 5 (lower is better) Translates to: TDFYQPLAFPVALAH*HAGLGSSTHNACSP Trigger: AGGCGAGCAGGCGTTGTGCGTAGAGGATCCTAGACCAGCATGCCAGTGTGCCAAGGCCACAGGGAAAGCGAGTGGTTGGTAAAAATCCGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS GCA 90 bp | CGTGTGGTTGCCAAGCCAAGCCGCCTGCTACCTTCATCACCAAATTaGACTCGCTCCTTCCTGGAATCCTTTTTCCTAGCTTCACCACCA | + |
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Preference number: 5 (lower is better) Translates to: RVVAKPSRLLPSSPN*TRSFLESFFLASPP Trigger: TGGTGGTGAAGCTAGGAAAAAGGATTCCAGGAAGGAGCGAGTGCAATTTGGTGATGAAGGTAGCAGGCGGCTTGGCTTGGCAACCACACG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000534336.1 ENST00000610481.1 ENST00000619449.2 |
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| CDS TCA 90 bp | CTTACTGGGTCTGGCTTCTCTGGCCCTTCGCATACGTGTGTCTGCTaGGTGTTCCTGCATGTAAGAATTAAGACCAAGGGAGGGGAGAGA | + |
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Preference number: 5 (lower is better) Translates to: LTGSGFSGPSHTCVC*VFLHVRIKTKGGER Trigger: TCTCTCCCCTCCCTTGGTCTTAATTCTTACATGCAGGAACACTCAGCAGACACACGTATGCGAAGGGCCAGAGAAGCCAGACCCAGTAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000610851.1 |
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| CDS CCA 90 bp | AGACCAACTAAGCGAATGGCTTTGTCTCCGAAGACACAGAGACCTTaGGCAGCCAGTCAGGGACACACCCAGAAGTGTTTACACTGCTCT | + |
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Preference number: 5 (lower is better) Translates to: RPTKRMALSPKTQRP*AASQGHTQKCLHCS Trigger: AGAGCAGTGTAAACACTTCTGGGTGTGTCCCTGACTGGCTGCCCAAGGTCTCTGTGTCTTCGGAGACAAAGCCATTCGCTTAGTTGGTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS TCA 90 bp | AAATCGGAGCAGCACGGGCTGTCTGCTTGGGAAATCTTAGAAACGTaGAAACCCACTCTTGGAAAACGCCTCAATCCCACACCACAGAGC | + |
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Preference number: 5 (lower is better) Translates to: KSEQHGLSAWEILET*KPTLGKRLNPTPQS Trigger: GCTCTGTGGTGTGGGATTGAGGCGTTTTCCAAGAGTGGGTTTTCACGTTTCTAAGATTTCCCAAGCAGACAGCCCGTGCTGCTCCGATTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS CCA 90 bp | GTTAGCGCTCCTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTaGCTCCTGGACTCTTTTCCTATCTTCACCACGAACTGCTGCTTG | + |
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Preference number: 5 (lower is better) Translates to: VSAPSFFLASFTKSH*LLDSFPIFTTNCCL Trigger: CAAGCAGCAGTTCGTGGTGAAGATAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAAGCTAGGAAGAAGGAAGGAGCGCTAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS CCA 90 bp | AGGATAATAGCGCTTTGTTGTCTCTCCTGCCACAGGAAGGCTCCATaGTTGTCCTACTTTAAGCCTTCGGTGCCTTTAGTGAGGGGTACC | + |
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Preference number: 5 (lower is better) Translates to: RIIALCCLSCHRKAP*LSYFKPSVPLVRGT Trigger: GGTACCCCTCACTAAAGGCACCGAAGGCTTAAAGTAGGACAACCATGGAGCCTTCCTGTGGCAGGAGAGACAACAAAGCGCTATTATCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000618227.1 |
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| CDS GCA 90 bp | CTGGACTCTTTTCCTATCTTCACCACGAACTGCTGCTTGCTCGCTTaGTCCTCAGTCCTAGCTTCATCAAACACTGGTTCCTGGAATCCT | + |
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Preference number: 5 (lower is better) Translates to: LDSFPIFTTNCCLLA*SSVLASSNTGSWNP Trigger: AGGATTCCAGGAACCAGTGTTTGATGAAGCTAGGACTGAGGAGCAAGCGAGCAAGCAGCAGTTCGTGGTGAAGATAGGAAAAGAGTCCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS CCA 90 bp | GAAAGCGAGTTCAAGTGGCCTTTTAAAGTAGACCAACTAAGCGAATaGCTTTGTCTCCGAAGACACAGAGACCTTGGGCAGCCAGTCAGG | + |
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Preference number: 5 (lower is better) Translates to: ESEFKWPFKVDQLSE*LCLRRHRDLGQPVR Trigger: CCTGACTGGCTGCCCAAGGTCTCTGTGTCTTCGGAGACAAAGCCATTCGCTTAGTTGGTCTACTTTAAAAGGCCACTTGAACTCGCTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS TCA 90 bp | CCCGCACGGAAATTTTTCTACCGTTTTTCAGCTTCCAGGCTCTCCTaGAAGTGCTCACAAGGCAAATCGCCATGGAAAGCGAGTTCAAGT | + |
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Preference number: 5 (lower is better) Translates to: PARKFFYRFSASRLS*KCSQGKSPWKASSS Trigger: ACTTGAACTCGCTTTCCATGGCGATTTGCCTTGTGAGCACTTTCAGGAGAGCCTGGAAGCTGAAAAACGGTAGAAAAATTTCCGTGCGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS TCA 90 bp | AGATTAAAGTGTGATAGTTCAGGGCTTTACTTTCCATTACGCAACTaGGCCCCAGCCTTGCAGGGACGGTTGAGAAGTGGCAAAATGGCG | + |
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Preference number: 5 (lower is better) Translates to: RLKCDSSGLYFPLRN*APALQGRLRSGKMA Trigger: CGCCATTTTGCCACTTCTCAACCGTCCCTGCAAGGCTGGGGCTCAGTTGCGTAATGGAAAGTAAAGCCCTGAACTATCACACTTTAATCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS GCA 90 bp | GACACTTCTCTTGACCTTAGGATAATAGCGCTTTGTTGTCTCTCCTaGCACAGGAAGGCTCCATGGTTGTCCTACTTTAAGCCTTCGGTG | + |
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Preference number: 5 (lower is better) Translates to: DTSLDLRIIALCCLS*HRKAPWLSYFKPSV Trigger: CACCGAAGGCTTAAAGTAGGACAACCATGGAGCCTTCCTGTGGCAGGAGAGACAACAAAGCGCTATTATCCTAAGGTCAAGAGAAGTGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS GCA 90 bp | GAGAATTTTTGCATTCCCACCCAAAAGCCCTCTCAGCCACTCAAATaGCTATCTTCTCCAGTCTACAAGTTACATGTTCCCACCCAGCAT | + |
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Preference number: 5 (lower is better) Translates to: ENFCIPTQKPSQPLK*LSSPVYKLHVPTQH Trigger: ATGCTGGGTGGGAACATGTAACTTGTAGACTGGAGAAGATAGGCATTTGAGTGGCTGAGAGGGCTTTTGGGTGGGAATGCAAAAATTCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS CCA 90 bp | CTGAAAGTGCTCACAAGGCAAATCGCCATGGAAAGCGAGTTCAAGTaGCCTTTTAAAGTAGACCAACTAAGCGAATGGCTTTGTCTCCGA | + |
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Preference number: 5 (lower is better) Translates to: LKVLTRQIAMESEFK*PFKVDQLSEWLCLR Trigger: TCGGAGACAAAGCCATTCGCTTAGTTGGTCTACTTTAAAAGGCCACTTGAACTCGCTTTCCATGGCGATTTGCCTTGTGAGCACTTTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS CCA 90 bp | ATTATGACACTTTCCTTGCCCAAATTAATGCACTGGTACACCCAGTaGCTCATATTTAACTTCCCCCAGCTTCCCAATTCAAACTGGGGG | + |
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Preference number: 5 (lower is better) Translates to: IMTLSLPKLMHWYTQ*LIFNFPQLPNSNWG Trigger: CCCCCAGTTTGAATTGGGAAGCTGGGGGAAGTTAAATATGAGCCACTGGGTGTACCAGTGCATTAATTTGGGCAAGGAAAGTGTCATAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000508832.2 ENST00000534336.1 ENST00000616527.4 ENST00000619449.2 |
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| CDS TCA 90 bp | AGGCAAACGAAACATTGGCACACAGCACAGCCTCCTCAATCCACTTaGTCCCAACTCATCTCTCATTTATTTCGGCTTCTTTTATTCCAG | + |
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Preference number: 5 (lower is better) Translates to: RQTKHWHTAQPPQST*SQLISHLFRLLLFQ Trigger: CTGGAATAAAAGAAGCCGAAATAAATGAGAGATGAGTTGGGATCAAGTGGATTGAGGAGGCTGTGCTGTGTGCCAATGTTTCGTTTGCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000508832.2 ENST00000534336.1 ENST00000618925.1 ENST00000619449.2 |
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| CDS CCA 90 bp | CCTACTGAAGAGCATTGGAGATCAGCTTCCGCTAAGATGCTAGCTTaGCCAAGTCTGTTATGTTCACCTGAAAAAGTCTTAGCAGAGAAT | + |
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Preference number: 5 (lower is better) Translates to: PTEEHWRSASAKMLA*PSLLCSPEKVLAEN Trigger: ATTCTCTGCTAAGACTTTTTCAGGTGAACATAACAGACTTGGCCAAGCTAGCATCTTAGCGGAAGCTGATCTCCAATGCTCTTCAGTAGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS GCA 90 bp | AACCCACAAACTTGCCATCTACTATTTCTCCAGGACTTGGCAGTCTaGCCTCAAAAGCTTCAGACAAGATTCATGAGTATAAGCCTGAAA | + |
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Preference number: 5 (lower is better) Translates to: NPQTCHLLFLQDLAV*PQKLQTRFMSISLK Trigger: TTTCAGGCTTATACTCATGAATCTTGTCTGAAGCTTTTGAGGGCAGACTGCCAAGTCCTGGAGAAATAGTAGATGGCAAGTTTGTGGGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS GCA 90 bp | GTCGTTTCACAATGCATTCTAATAGCAGCGGGATCAGAACAGTACTaGATTTACTTGCCAACAGAACAGACAGACCTGAAGTCAAGACAA | + |
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Preference number: 5 (lower is better) Translates to: VVSQCILIAAGSEQY*IYLPTEQTDLKSRQ Trigger: TTGTCTTGACTTCAGGTCTGTCTGTTCTGTTGGCAAGTAAATGCAGTACTGTTCTGATCCCGCTGCTATTAGAATGCATTGTGAAACGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000534336.1 ENST00000616527.4 ENST00000618132.1 ENST00000620465.4 |
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| CDS TCA 90 bp | TTAAACTTATCTGTTAACAGCTGCCTGCTGTTTTCTGCTCCCAGATaGAATGAAGCAACTCTTCTGATAACGAAGAGATACCTGTCTGAG | + |
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Preference number: 5 (lower is better) Translates to: LNLSVNSCLLFSAPR*NEATLLITKRYLSE Trigger: CTCAGACAGGTATCTCTTCGTTATCAGAAGAGTTGCTTCATTTCATCTGGGAGCAGAAAACAGCAGGCAGCTGTTAACAGATAAGTTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000508832.2 ENST00000534336.1 ENST00000619449.2 |
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| CDS GCA 90 bp | GCATTGGGGAACACAACTTTTAATCATACTCCAGTCGTTTCACAATaGATTCTAATAGCAGCGGGATCAGAACAGTACTGCATTTACTTG | + |
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Preference number: 5 (lower is better) Translates to: ALGNTTFNHTPVVSQ*ILIAAGSEQYCIYL Trigger: CAAGTAAATGCAGTACTGTTCTGATCCCGCTGCTATTAGAATGCATTGTGAAACGACTGGAGTATGATTAAAAGTTGTGTTCCCCAATGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000618132.1 |
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| CDS CCA 90 bp | ATACAGTATCAAATTATGACACTTTCCTTGCCCAAATTAATGCACTaGTACACCCAGTGGCTCATATTTAACTTCCCCCAGCTTCCCAAT | + |
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Preference number: 5 (lower is better) Translates to: IQYQIMTLSLPKLMH*YTQWLIFNFPQLPN Trigger: ATTGGGAAGCTGGGGGAAGTTAAATATGAGCCACTGGGTGTACCAGTGCATTAATTTGGGCAAGGAAAGTGTCATAATTTGATACTGTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000508832.2 ENST00000534336.1 ENST00000616527.4 ENST00000619449.2 |
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| CDS TCA 90 bp | TTATTGGAAAACTTAACTTCAACATTTGGCCTACTCAAGCTCTTCTaGAGTTCTCCTGAGATGACTGAATATGAACCAAAGCTGCACTGT | + |
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Preference number: 5 (lower is better) Translates to: LLENLTSTFGLLKLF*SSPEMTEYEPKLHC Trigger: ACAGTGCAGCTTTGGTTCATATTCAGTCATCTCAGGAGAACTTCAGAAGAGCTTGAGTAGGCCAAATGTTGAAGTTAAGTTTTCCAATAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS GCA 90 bp | CTTGAGATTTGGGCTTTATTATTAAGAGCTGCTATAAAAACAGCTTaGTTAAATGTTAAGAGAAGCCCAGGGGTACTTCAAGCATTCCTT | + |
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Preference number: 5 (lower is better) Translates to: LEIWALLLRAAIKTA*LNVKRSPGVLQAFL Trigger: AAGGAATGCTTGAAGTACCCCTGGGCTTCTCTTAACATTTAAGCAAGCTGTTTTTATAGCAGCTCTTAATAATAAAGCCCAAATCTCAAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000616691.1 |
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| CDS GCA 90 bp | CATATGCAGATAATGTTCTCATCAGTAGTAAGAATCTCAGGGTTATaGTTATTCCCCAATGGAGGTATGACATATAATCTTTTCTGCCTT | + |
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Preference number: 5 (lower is better) Translates to: HMQIMFSSVVRISGL*LFPNGGMTYNLFCL Trigger: AAGGCAGAAAAGATTATATGTCATACCTCCATTGGGGAATAAGCATAACCCTGAGATTCTTACTACTGATGAGAACATTATCTGCATATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000508832.2 ENST00000534336.1 ENST00000618925.1 ENST00000619449.2 |
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| CDS GCA 90 bp | CACCTGTCTAAGAGGTTATTTATTCCTTATTTAGAGGGCCTCTATTaGCATGTGCCTGGAATTATTATATGCTCATCACTTTATGAAGAA | + |
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Preference number: 5 (lower is better) Translates to: HLSKRLFIPYLEGLY*HVPGIIICSSLYEE Trigger: TTCTTCATAAAGTGATGAGCATATAATAATTCCAGGCACATGGCAATAGAGGCCCTCTAAATAAGGAATAAATAACCTCTTAGACAGGTG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS GCA 72 bp | TCCGCCTGCCCCCTCAGCAGAAGCCCCTGCGCTGGCTaGCTCAATGCCTACCGCACAGCTCGGGCGAGGCGT | + |
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Preference number: 6 (lower is better) Translates to: SACPLSRSPCAG*LNAYRTARARR Trigger: ACGCCTCGCCCGAGCTGTGCGGTAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAGGCGGA 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS TCA 72 bp | CCGGAGGCGTCAGAGGGGACCTGCCTTCAGGCGAGCTaGGGCTTCCCGGCGCCGGGCTTCTGCGTTGCTAAA | + |
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Preference number: 6 (lower is better) Translates to: PEASEGTCLQAS*GFPAPGFCVAK Trigger: TTTAGCAACGCAGAAGCCCGGCGCCGGGAAGCCTCAGCTCGCCTGAAGGCAGGTCCCCTCTGACGCCTCCGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS CCA 72 bp | CAACTCGTCGCTGCGTCCCAAGGACTCTGGGAAACCTaGGCTCCCGGAGGCGTCAGAGGGGACCTGCCTTCA | + |
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Preference number: 6 (lower is better) Translates to: QLVAASQGLWET*APGGVRGDLPS Trigger: TGAAGGCAGGTCCCCTCTGACGCCTCCGGGAGCCCAGGTTTCCCAGAGTCCTTGGGACGCAGCGACGAGTTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS CCA 72 bp | ATAGCAGCACAACTCGTCGCTGCGTCCCAAGGACTCTaGGAAACCTGGGCTCCCGGAGGCGTCAGAGGGGAC | + |
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Preference number: 6 (lower is better) Translates to: IAAQLVAASQGL*ETWAPGGVRGD Trigger: GTCCCCTCTGACGCCTCCGGGAGCCCAGGTTTCCCAGAGTCCTTGGGACGCAGCGACGAGTTGTGCTGCTAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS GCA 72 bp | TGGCATGCTGGTCTAGGATCCTCTACGCACAACGCCTaGTCGCCTCCTCCGTGTGGTTGCCAAGCCAAGCCG | + |
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Preference number: 6 (lower is better) Translates to: WHAGLGSSTHNA*SPPPCGCQAKP Trigger: CGGCTTGGCTTGGCAACCACACGGAGGAGGCGAGCAGGCGTTGTGCGTAGAGGATCCTAGACCAGCATGCCA 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS GCA 72 bp | AATGGCGCTGCGCTTAAGAGGGCAGGAGAGGCCAGTTaGGGGGCCCCAGTCCTTTACAGAAGTCTCGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: NGAALKRAGEAS*GAPVLYRSLGL Trigger: CAGCCCGAGACTTCTGTAAAGGACTGGGGCCCCGCAACTGGCCTCTCCTGCCCTCTTAAGCGCAGCGCCATT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000619449.2 |
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| CDS CCA 72 bp | ATCCTCTACGCACAACGCCTGCTCGCCTCCTCCGTGTaGTTGCCAAGCCAAGCCGCCTGCTACCTTCATCAC | + |
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Preference number: 6 (lower is better) Translates to: ILYAQRLLASSV*LPSQAACYLHH Trigger: GTGATGAAGGTAGCAGGCGGCTTGGCTTGGCAACCACACGGAGGAGGCGAGCAGGCGTTGTGCGTAGAGGAT 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000534336.1 ENST00000610481.1 ENST00000619449.2 |
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| CDS CAA 72 bp | CTCTACGCACAACGCCTGCTCGCCTCCTCCGTGTGGTaGCCAAGCCAAGCCGCCTGCTACCTTCATCACCAA | + |
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Preference number: 6 (lower is better) Translates to: LYAQRLLASSVW*PSQAACYLHHQ Trigger: TTGGTGATGAAGGTAGCAGGCGGCTTGGCTTGGCAACCACACGGAGGAGGCGAGCAGGCGTTGTGCGTAGAG 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000534336.1 ENST00000610481.1 ENST00000619449.2 |
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| CDS GCA 72 bp | CTCGCCTCCTCCGTGTGGTTGCCAAGCCAAGCCGCCTaGTACCTTCATCACCAAATTGCACTCGCTCCTTCC | + |
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Preference number: 6 (lower is better) Translates to: LASSVWLPSQAA*YLHHQIALAPS Trigger: GGAAGGAGCGAGTGCAATTTGGTGATGAAGGTAGCAGGCGGCTTGGCTTGGCAACCACACGGAGGAGGCGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000534336.1 ENST00000610481.1 ENST00000619449.2 |
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| CDS GCA 72 bp | TCTACGCACAACGCCTGCTCGCCTCCTCCGTGTGGTTaGCAAGCCAAGCCGCCTGCTACCTTCATCACCAAA | + |
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Preference number: 6 (lower is better) Translates to: STHNACSPPPCG*QAKPPATFITK Trigger: TTTGGTGATGAAGGTAGCAGGCGGCTTGGCTTGGCAACCACACGGAGGAGGCGAGCAGGCGTTGTGCGTAGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000534336.1 ENST00000610481.1 ENST00000619449.2 |
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| CDS CAA 90 bp | TCTAGGATCCTCTACGCACAACGCCTGCTCGCCTCCTCCGTGTGGTaGCCAAGCCAAGCCGCCTGCTACCTTCATCACCAAATTGCACTC | + |
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Preference number: 6 (lower is better) Translates to: SRILYAQRLLASSVW*PSQAACYLHHQIAL Trigger: GAGTGCAATTTGGTGATGAAGGTAGCAGGCGGCTTGGCTTGGCAACCACACGGAGGAGGCGAGCAGGCGTTGTGCGTAGAGGATCCTAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS CAA 90 bp | GCCGACCTCACGGATTTTTACCAACCACTCGCTTTCCCTGTGGCCTaGGCACACTGGCATGCTGGTCTAGGATCCTCTACGCACAACGCC | + |
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Preference number: 6 (lower is better) Translates to: ADLTDFYQPLAFPVA*AHWHAGLGSSTHNA Trigger: GGCGTTGTGCGTAGAGGATCCTAGACCAGCATGCCAGTGTGCCAAGGCCACAGGGAAAGCGAGTGGTTGGTAAAAATCCGTGAGGTCGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
||
| CDS CCA 72 bp | TACCAACCACTCGCTTTCCCTGTGGCCTTGGCACACTaGCATGCTGGTCTAGGATCCTCTACGCACAACGCC | + |
|
Preference number: 6 (lower is better) Translates to: YQPLAFPVALAH*HAGLGSSTHNA Trigger: GGCGTTGTGCGTAGAGGATCCTAGACCAGCATGCCAGTGTGCCAAGGCCACAGGGAAAGCGAGTGGTTGGTA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS GCA 72 bp | AAGTGGCAAAATGGCGGACTTTCTCCCCCAACTGCTTaGAGTCCTGCGACTTGCTCCCAAGACAGCCACACG | + |
|
Preference number: 6 (lower is better) Translates to: KWQNGGLSPPTA*SPATCSQDSHT Trigger: CGTGTGGCTGTCTTGGGAGCAAGTCGCAGGACTGCAAGCAGTTGGGGGAGAAAGTCCGCCATTTTGCCACTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS CAA 72 bp | GAAGTGGCAAAATGGCGGACTTTCTCCCCCAACTGCTaGCAGTCCTGCGACTTGCTCCCAAGACAGCCACAC | + |
|
Preference number: 6 (lower is better) Translates to: EVAKWRTFSPNC*QSCDLLPRQPH Trigger: GTGTGGCTGTCTTGGGAGCAAGTCGCAGGACTGCAAGCAGTTGGGGGAGAAAGTCCGCCATTTTGCCACTTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS TCA 72 bp | CAGATTAGTAGTCAAAGCAAAGACGCCGCAGGGATTTaGACCCCGTCCTGGAAACCAGGAGTGCCAACCACC | + |
|
Preference number: 6 (lower is better) Translates to: QISSQSKDAAGI*TPSWKPGVPTT Trigger: GGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTTCAAATCCCTGCGGCGTCTTTGCTTTGACTACTAATCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS GCA 72 bp | AAATGGCGGACTTTCTCCCCCAACTGCTTGCAGTCCTaGGACTTGCTCCCAAGACAGCCACACGTTTTGCTT | + |
|
Preference number: 6 (lower is better) Translates to: KWRTFSPNCLQS*DLLPRQPHVLL Trigger: AAGCAAAACGTGTGGCTGTCTTGGGAGCAAGTCGCAGGACTGCAAGCAGTTGGGGGAGAAAGTCCGCCATTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS CAA 72 bp | ACGGATTTTTACCAACCACTCGCTTTCCCTGTGGCCTaGGCACACTGGCATGCTGGTCTAGGATCCTCTACG | + |
|
Preference number: 6 (lower is better) Translates to: TDFYQPLAFPVA*AHWHAGLGSST Trigger: CGTAGAGGATCCTAGACCAGCATGCCAGTGTGCCAAGGCCACAGGGAAAGCGAGTGGTTGGTAAAAATCCGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS CAA 90 bp | GCAGTCCTGCGACTTGCTCCCAAGACAGCCACACGTTTTGCTTTTTaGTTCGAGAAATCGGAGCAGCACGGGCTGTCTGCTTGGGAAATC | + |
|
Preference number: 6 (lower is better) Translates to: AVLRLAPKTATRFAF*FEKSEQHGLSAWEI Trigger: GATTTCCCAAGCAGACAGCCCGTGCTGCTCCGATTTCTCGAACAAAAAAGCAAAACGTGTGGCTGTCTTGGGAGCAAGTCGCAGGACTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS TCA 72 bp | TGTGATAGTTCAGGGCTTTACTTTCCATTACGCAACTaGGCCCCAGCCTTGCAGGGACGGTTGAGAAGTGGC | + |
|
Preference number: 6 (lower is better) Translates to: CDSSGLYFPLRN*APALQGRLRSG Trigger: GCCACTTCTCAACCGTCCCTGCAAGGCTGGGGCTCAGTTGCGTAATGGAAAGTAAAGCCCTGAACTATCACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS GCA 72 bp | TGGCTCCTGGACTCTTTTCCTATCTTCACCACGAACTaGTGCTTGCTCGCTTGCTCCTCAGTCCTAGCTTCA | + |
|
Preference number: 6 (lower is better) Translates to: WLLDSFPIFTTN*CLLACSSVLAS Trigger: TGAAGCTAGGACTGAGGAGCAAGCGAGCAAGCAGCAGTTCGTGGTGAAGATAGGAAAAGAGTCCAGGAGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS GCA 72 bp | GCCAAGCCAAGCCGCCTGCTACCTTCATCACCAAATTaGACTCGCTCCTTCCTGGAATCCTTTTTCCTAGCT | + |
|
Preference number: 6 (lower is better) Translates to: AKPSRLLPSSPN*TRSFLESFFLA Trigger: AGCTAGGAAAAAGGATTCCAGGAAGGAGCGAGTGCAATTTGGTGATGAAGGTAGCAGGCGGCTTGGCTTGGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000534336.1 ENST00000610481.1 ENST00000619449.2 |
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| CDS CCA 72 bp | AAGCGAATGGCTTTGTCTCCGAAGACACAGAGACCTTaGGCAGCCAGTCAGGGACACACCCAGAAGTGTTTA | + |
|
Preference number: 6 (lower is better) Translates to: KRMALSPKTQRP*AASQGHTQKCL Trigger: TAAACACTTCTGGGTGTGTCCCTGACTGGCTGCCCAAGGTCTCTGTGTCTTCGGAGACAAAGCCATTCGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS CAA 90 bp | CCTGGACTCTTTTCCTATCTTCACCACGAACTGCTGCTTGCTCGCTaGCTCCTCAGTCCTAGCTTCATCAAACACTGGTTCCTGGAATCC | + |
|
Preference number: 6 (lower is better) Translates to: PGLFSYLHHELLLAR*LLSPSFIKHWFLES Trigger: GGATTCCAGGAACCAGTGTTTGATGAAGCTAGGACTGAGGAGCAAGCGAGCAAGCAGCAGTTCGTGGTGAAGATAGGAAAAGAGTCCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
||
| CDS TCA 72 bp | GAATACTCTTCCAAGGATAAAAGCAGCTCCAGTCCCTaGAGGTGTTCGTGCCAACAGCACAGCGGTACACTC | + |
|
Preference number: 6 (lower is better) Translates to: EYSSKDKSSSSP*RCSCQQHSGTL Trigger: GAGTGTACCGCTGTGCTGTTGGCACGAACACCTTCAGGGACTGGAGCTGCTTTTATCCTTGGAAGAGTATTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS GCA 72 bp | CTCCTGGACTCTTTTCCTATCTTCACCACGAACTGCTaGTTGCTCGCTTGCTCCTCAGTCCTAGCTTCATCA | + |
|
Preference number: 6 (lower is better) Translates to: LLDSFPIFTTNC*LLACSSVLASS Trigger: TGATGAAGCTAGGACTGAGGAGCAAGCGAGCAAGCAGCAGTTCGTGGTGAAGATAGGAAAAGAGTCCAGGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS GCA 72 bp | CGACACCATCGTTACCTTGAAACCGATTATGGATCATaGCCACAAGGATCCAAGCTACTGGCTGCATCGAGG | + |
|
Preference number: 6 (lower is better) Translates to: RHHRYLETDYGS*PQGSKLLAASR Trigger: CCTCGATGCAGCCAGTAGCTTGGATCCTTGTGGGCATGATCCATAATCGGTTTCAAGGTAACGATGGTGTCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS GCA 72 bp | GCTGCAGGCTATTACCTTGAAACCGATTATGGATCATaGCCACAAGGATCCAAGCTACTGGCTGCATCGAGG | + |
|
Preference number: 6 (lower is better) Translates to: AAGYYLETDYGS*PQGSKLLAASR Trigger: CCTCGATGCAGCCAGTAGCTTGGATCCTTGTGGGCATGATCCATAATCGGTTTCAAGGTAATAGCCTGCAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000616691.1 ENST00000617489.1 ENST00000618227.1 |
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| CDS TCA 72 bp | TCTGGCTTCTCTGGCCCTTCGCATACGTGTGTCTGCTaGGTGTTCCTGCATGTAAGAATTAAGACCAAGGGA | + |
|
Preference number: 6 (lower is better) Translates to: SGFSGPSHTCVC*VFLHVRIKTKG Trigger: TCCCTTGGTCTTAATTCTTACATGCAGGAACACTCAGCAGACACACGTATGCGAAGGGCCAGAGAAGCCAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000610851.1 |
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| CDS TCA 72 bp | CTTCCGCCGCCTCTTAAAGCACTTCTTGTGTTCTCTTaGGGGACAGTAGGTATAGTTTACCACCTTCAGGCG | + |
|
Preference number: 6 (lower is better) Translates to: LPPPLKALLVFS*GTVGIVYHLQA Trigger: CGCCTGAAGGTGGTAAACTATACCTACTGTCCCTCAAGAGAACACAAGAAGTGCTTTAAGAGGCGGCGGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000619449.2 |
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| CDS GCA 72 bp | TTTCCTATCTTCACCACGAACTGCTGCTTGCTCGCTTaGTCCTCAGTCCTAGCTTCATCAAACACTGGTTCC | + |
|
Preference number: 6 (lower is better) Translates to: FPIFTTNCCLLA*SSVLASSNTGS Trigger: GGAACCAGTGTTTGATGAAGCTAGGACTGAGGAGCAAGCGAGCAAGCAGCAGTTCGTGGTGAAGATAGGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS GCA 72 bp | ACCCCTCCACCCCCACGCCAACACAGTTTGCTCACATaGCAGTTACTCCAGCATAAAGCTGAAATCTATTCA | + |
|
Preference number: 6 (lower is better) Translates to: TPPPPRQHSLLT*QLLQHKAEIYS Trigger: TGAATAGATTTCAGCTTTATGCTGGAGTAACTGGCATGTGAGCAAACTGTGTTGGCGTGGGGGTGGAGGGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000618227.1 |
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| CDS CCA 72 bp | CCTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTaGCTCCTGGACTCTTTTCCTATCTTCACCACGAAC | + |
|
Preference number: 6 (lower is better) Translates to: PSFFLASFTKSH*LLDSFPIFTTN Trigger: GTTCGTGGTGAAGATAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAAGCTAGGAAGAAGGAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS GCA 72 bp | TGCATTCCCACCCAAAAGCCCTCTCAGCCACTCAAATaGCTATCTTCTCCAGTCTACAAGTTACATGTTCCC | + |
|
Preference number: 6 (lower is better) Translates to: CIPTQKPSQPLK*LSSPVYKLHVP Trigger: GGGAACATGTAACTTGTAGACTGGAGAAGATAGGCATTTGAGTGGCTGAGAGGGCTTTTGGGTGGGAATGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS CCA 72 bp | TGCTCCTCAGTCCTAGCTTCATCAAACACTGGTTCCTaGAATCCTGTCTGCTGCTGTCTTCCTAGATTCACT | + |
|
Preference number: 6 (lower is better) Translates to: CSSVLASSNTGS*NPVCCCLPRFT Trigger: AGTGAATCTAGGAAGACAGCAGCAGACAGGATTCCAGGAACCAGTGTTTGATGAAGCTAGGACTGAGGAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS CAA 72 bp | TTTTCCTATCTTCACCACGAACTGCTGCTTGCTCGCTaGCTCCTCAGTCCTAGCTTCATCAAACACTGGTTC | + |
|
Preference number: 6 (lower is better) Translates to: FSYLHHELLLAR*LLSPSFIKHWF Trigger: GAACCAGTGTTTGATGAAGCTAGGACTGAGGAGCAAGCGAGCAAGCAGCAGTTCGTGGTGAAGATAGGAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS CAA 72 bp | GTTCAACCCACCAAAGACCTCGACACCATCGTTACCTaGAAACCGATTATGGATCATGCCCACAAGGATCCA | + |
|
Preference number: 6 (lower is better) Translates to: VQPTKDLDTIVT*KPIMDHAHKDP Trigger: TGGATCCTTGTGGGCATGATCCATAATCGGTTTCAAGGTAACGATGGTGTCGAGGTCTTTGGTGGGTTGAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS CAA 90 bp | ACTCTTCTGATAACGAAGAGATACCTGTCTGAGGCAAACGAAACATaGGCACACAGCACAGCCTCCTCAATCCACTTGATCCCAACTCAT | + |
|
Preference number: 6 (lower is better) Translates to: TLLITKRYLSEANET*AHSTASSIHLIPTH Trigger: ATGAGTTGGGATCAAGTGGATTGAGGAGGCTGTGCTGTGTGCCAATGTTTCGTTTGCCTCAGACAGGTATCTCTTCGTTATCAGAAGAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000508832.2 ENST00000534336.1 ENST00000619449.2 |
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| CDS CAA 90 bp | TCTAACATAGTTCAACCCACCAAAGACCTCGACACCATCGTTACCTaGAAACCGATTATGGATCATGCCCACAAGGATCCAAGCTACTGG | + |
|
Preference number: 6 (lower is better) Translates to: SNIVQPTKDLDTIVT*KPIMDHAHKDPSYW Trigger: CCAGTAGCTTGGATCCTTGTGGGCATGATCCATAATCGGTTTCAAGGTAACGATGGTGTCGAGGTCTTTGGTGGGTTGAACTATGTTAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS TCA 72 bp | TTCAACCCACCAAAGACCTCGACACCATCGTTACCTTaGAACCGATTATGGATCATGCCCACAAGGATCCAA | + |
|
Preference number: 6 (lower is better) Translates to: FNPPKTSTPSLP*NRLWIMPTRIQ Trigger: TTGGATCCTTGTGGGCATGATCCATAATCGGTTTCAAGGTAACGATGGTGTCGAGGTCTTTGGTGGGTTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS GCA 72 bp | GCTTCATCAAACACTGGTTCCTGGAATCCTGTCTGCTaGTGTCTTCCTAGATTCACTGAATCCACTTCTGTG | + |
|
Preference number: 6 (lower is better) Translates to: ASSNTGSWNPVC*CLPRFTESTSV Trigger: CACAGAAGTGGATTCAGTGAATCTAGGAAGACAGCAGCAGACAGGATTCCAGGAACCAGTGTTTGATGAAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS GCA 72 bp | CTTGACCTTAGGATAATAGCGCTTTGTTGTCTCTCCTaGCACAGGAAGGCTCCATGGTTGTCCTACTTTAAG | + |
|
Preference number: 6 (lower is better) Translates to: LDLRIIALCCLS*HRKAPWLSYFK Trigger: CTTAAAGTAGGACAACCATGGAGCCTTCCTGTGGCAGGAGAGACAACAAAGCGCTATTATCCTAAGGTCAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000616691.1 |
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| CDS GCA 72 bp | AAGGGTCTTAGGATAATAGCGCTTTGTTGTCTCTCCTaGCACAGGAAGGCTCCATGGTTGTCCTACTTTAAG | + |
|
Preference number: 6 (lower is better) Translates to: KGLRIIALCCLS*HRKAPWLSYFK Trigger: CTTAAAGTAGGACAACCATGGAGCCTTCCTGTGGCAGGAGAGACAACAAAGCGCTATTATCCTAAGACCCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000618227.1 |
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| CDS CCA 72 bp | TTCAAGTGGCCTTTTAAAGTAGACCAACTAAGCGAATaGCTTTGTCTCCGAAGACACAGAGACCTTGGGCAG | + |
|
Preference number: 6 (lower is better) Translates to: FKWPFKVDQLSE*LCLRRHRDLGQ Trigger: CTGCCCAAGGTCTCTGTGTCTTCGGAGACAAAGCCATTCGCTTAGTTGGTCTACTTTAAAAGGCCACTTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS TCA 72 bp | AAATTTTTCTACCGTTTTTCAGCTTCCAGGCTCTCCTaGAAGTGCTCACAAGGCAAATCGCCATGGAAAGCG | + |
|
Preference number: 6 (lower is better) Translates to: KFFYRFSASRLS*KCSQGKSPWKA Trigger: CGCTTTCCATGGCGATTTGCCTTGTGAGCACTTTCAGGAGAGCCTGGAAGCTGAAAAACGGTAGAAAAATTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS GCA 72 bp | CTAGCTTCATCAAACACTGGTTCCTGGAATCCTGTCTaGTGCTGTCTTCCTAGATTCACTGAATCCACTTCT | + |
|
Preference number: 6 (lower is better) Translates to: LASSNTGSWNPV*CCLPRFTESTS Trigger: AGAAGTGGATTCAGTGAATCTAGGAAGACAGCAGCAGACAGGATTCCAGGAACCAGTGTTTGATGAAGCTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS CCA 72 bp | CTTTCCTTGCCCAAATTAATGCACTGGTACACCCAGTaGCTCATATTTAACTTCCCCCAGCTTCCCAATTCA | + |
|
Preference number: 6 (lower is better) Translates to: LSLPKLMHWYTQ*LIFNFPQLPNS Trigger: TGAATTGGGAAGCTGGGGGAAGTTAAATATGAGCCACTGGGTGTACCAGTGCATTAATTTGGGCAAGGAAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000508832.2 ENST00000534336.1 ENST00000616527.4 ENST00000619449.2 |
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| CDS CCA 72 bp | CTCACAAGGCAAATCGCCATGGAAAGCGAGTTCAAGTaGCCTTTTAAAGTAGACCAACTAAGCGAATGGCTT | + |
|
Preference number: 6 (lower is better) Translates to: LTRQIAMESEFK*PFKVDQLSEWL Trigger: AAGCCATTCGCTTAGTTGGTCTACTTTAAAAGGCCACTTGAACTCGCTTTCCATGGCGATTTGCCTTGTGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS CCA 72 bp | ACCCACAAACTTGCCATCTACTATTTCTCCAGGACTTaGCAGTCTGCCCTCAAAAGCTTCAGACAAGATTCA | + |
|
Preference number: 6 (lower is better) Translates to: THKLAIYYFSRT*QSALKSFRQDS Trigger: TGAATCTTGTCTGAAGCTTTTGAGGGCAGACTGCCAAGTCCTGGAGAAATAGTAGATGGCAAGTTTGTGGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS CCA 72 bp | GAAAAGAAAAACCTTCATGACCCTACTGAAGAGCATTaGAGATCAGCTTCCGCTAAGATGCTAGCTTGGCCA | + |
|
Preference number: 6 (lower is better) Translates to: EKKNLHDPTEEH*RSASAKMLAWP Trigger: TGGCCAAGCTAGCATCTTAGCGGAAGCTGATCTCCAATGCTCTTCAGTAGGGTCATGAAGGTTTTTCTTTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS CAA 72 bp | GAAACATTGGCACACAGCACAGCCTCCTCAATCCACTaGATCCCAACTCATCTCTCATTTATTTCGGCTTCT | + |
|
Preference number: 6 (lower is better) Translates to: ETLAHSTASSIH*IPTHLSFISAS Trigger: AGAAGCCGAAATAAATGAGAGATGAGTTGGGATCAAGTGGATTGAGGAGGCTGTGCTGTGTGCCAATGTTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000508832.2 ENST00000534336.1 ENST00000618925.1 ENST00000619449.2 |
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| CDS CAA 72 bp | AACCCACAAACTTGCCATCTACTATTTCTCCAGGACTaGGCAGTCTGCCCTCAAAAGCTTCAGACAAGATTC | + |
|
Preference number: 6 (lower is better) Translates to: NPQTCHLLFLQD*AVCPQKLQTRF Trigger: GAATCTTGTCTGAAGCTTTTGAGGGCAGACTGCCAAGTCCTGGAGAAATAGTAGATGGCAAGTTTGTGGGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS CAA 90 bp | GAGGCAAACGAAACATTGGCACACAGCACAGCCTCCTCAATCCACTaGATCCCAACTCATCTCTCATTTATTTCGGCTTCTTTTATTCCA | + |
|
Preference number: 6 (lower is better) Translates to: EANETLAHSTASSIH*IPTHLSFISASFIP Trigger: TGGAATAAAAGAAGCCGAAATAAATGAGAGATGAGTTGGGATCAAGTGGATTGAGGAGGCTGTGCTGTGTGCCAATGTTTCGTTTGCCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000508832.2 ENST00000534336.1 ENST00000618925.1 ENST00000619449.2 |
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| CDS CAA 90 bp | GTACTTCAAGCATTCCTTCGGATGCTTCACTCCAGAAAGAGGGAGTaGAGGCAAGTCCTCATTACTAATAAAAATCAGGTGAGGCTGACA | + |
|
Preference number: 6 (lower is better) Translates to: VLQAFLRMLHSRKRE*RQVLITNKNQVRLT Trigger: TGTCAGCCTCACCTGATTTTTATTAGTAATGAGGACTTGCCTCAACTCCCTCTTTCTGGAGTGAAGCATCCGAAGGAATGCTTGAAGTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000616691.1 |
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| CDS TCA 72 bp | AAACATTGGCACACAGCACAGCCTCCTCAATCCACTTaGTCCCAACTCATCTCTCATTTATTTCGGCTTCTT | + |
|
Preference number: 6 (lower is better) Translates to: KHWHTAQPPQST*SQLISHLFRLL Trigger: AAGAAGCCGAAATAAATGAGAGATGAGTTGGGATCAAGTGGATTGAGGAGGCTGTGCTGTGTGCCAATGTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000508832.2 ENST00000534336.1 ENST00000618925.1 ENST00000619449.2 |
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| CDS TCA 72 bp | GTGTTATGCCTGGTTAGGTATGAGCTTCAGACCTTCTaGACCGGAGCAGGAAGAAAAATAAAAGCTTTCCTC | + |
|
Preference number: 6 (lower is better) Translates to: VLCLVRYELQTF*TGAGRKIKAFL Trigger: GAGGAAAGCTTTTATTTTTCTTCCTGCTCCGGTTCAGAAGGTCTGAAGCTCATACCTAACCAGGCATAACAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000534336.1 |
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| CDS GCA 72 bp | CAATGCATTCTAATAGCAGCGGGATCAGAACAGTACTaGATTTACTTGCCAACAGAACAGACAGACCTGAAG | + |
|
Preference number: 6 (lower is better) Translates to: QCILIAAGSEQY*IYLPTEQTDLK Trigger: CTTCAGGTCTGTCTGTTCTGTTGGCAAGTAAATGCAGTACTGTTCTGATCCCGCTGCTATTAGAATGCATTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000534336.1 ENST00000616527.4 ENST00000618132.1 ENST00000620465.4 |
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| CDS CCA 72 bp | TTCCTAGATTCACTGAATCCACTTCTGTGTAGCACCTaGGTCAGCTGTCAATTAATGCTAGTCCTCAGGATT | + |
|
Preference number: 6 (lower is better) Translates to: FLDSLNPLLCST*VSCQLMLVLRI Trigger: AATCCTGAGGACTAGCATTAATTGACAGCTGACCCAGGTGCTACACAGAAGTGGATTCAGTGAATCTAGGAA 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS CCA 72 bp | GAGCATTGGAGATCAGCTTCCGCTAAGATGCTAGCTTaGCCAAGTCTGTTATGTTCACCTGAAAAAGTCTTA | + |
|
Preference number: 6 (lower is better) Translates to: EHWRSASAKMLA*PSLLCSPEKVL Trigger: TAAGACTTTTTCAGGTGAACATAACAGACTTGGCCAAGCTAGCATCTTAGCGGAAGCTGATCTCCAATGCTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000534336.1 |
||
| CDS CAA 72 bp | CTAATAGCAGCGGGATCAGAACAGTACTGCATTTACTaGCCAACAGAACAGACAGACCTGAAGTCAAGACAA | + |
|
Preference number: 6 (lower is better) Translates to: LIAAGSEQYCIY*PTEQTDLKSRQ Trigger: TTGTCTTGACTTCAGGTCTGTCTGTTCTGTTGGCAAGTAAATGCAGTACTGTTCTGATCCCGCTGCTATTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000534336.1 ENST00000616527.4 ENST00000618132.1 ENST00000620465.4 |
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| CDS CAA 72 bp | GCATTCCTTCGGATGCTTCACTCCAGAAAGAGGGAGTaGAGGCAAGTCCTCATTACTAATAAAAATCAGGTG | + |
|
Preference number: 6 (lower is better) Translates to: AFLRMLHSRKRE*RQVLITNKNQV Trigger: CACCTGATTTTTATTAGTAATGAGGACTTGCCTCAACTCCCTCTTTCTGGAGTGAAGCATCCGAAGGAATGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000616691.1 |
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| CDS TCA 72 bp | TCTGTTAACAGCTGCCTGCTGTTTTCTGCTCCCAGATaGAATGAAGCAACTCTTCTGATAACGAAGAGATAC | + |
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Preference number: 6 (lower is better) Translates to: SVNSCLLFSAPR*NEATLLITKRY Trigger: GTATCTCTTCGTTATCAGAAGAGTTGCTTCATTTCATCTGGGAGCAGAAAACAGCAGGCAGCTGTTAACAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000508832.2 ENST00000534336.1 ENST00000619449.2 |
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| CDS GCA 72 bp | ACTTGCCATCTACTATTTCTCCAGGACTTGGCAGTCTaGCCTCAAAAGCTTCAGACAAGATTCATGAGTATA | + |
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Preference number: 6 (lower is better) Translates to: TCHLLFLQDLAV*PQKLQTRFMSI Trigger: TATACTCATGAATCTTGTCTGAAGCTTTTGAGGGCAGACTGCCAAGTCCTGGAGAAATAGTAGATGGCAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS CCA 72 bp | CAAATTATGACACTTTCCTTGCCCAAATTAATGCACTaGTACACCCAGTGGCTCATATTTAACTTCCCCCAG | + |
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Preference number: 6 (lower is better) Translates to: QIMTLSLPKLMH*YTQWLIFNFPQ Trigger: CTGGGGGAAGTTAAATATGAGCCACTGGGTGTACCAGTGCATTAATTTGGGCAAGGAAAGTGTCATAATTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000508832.2 ENST00000534336.1 ENST00000616527.4 ENST00000619449.2 |
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| CDS TCA 72 bp | TGCCTTAAAGTTACATTCGTTCTTCCGCTCAAATCCTaGTCTGGTCCATTAAAGAGTGTTCGCAGACAAAGT | + |
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Preference number: 6 (lower is better) Translates to: CLKVTFVLPLKS*SGPLKSVRRQS Trigger: ACTTTGTCTGCGAACACTCTTTAATGGACCAGATCAGGATTTGAGCGGAAGAACGAATGTAACTTTAAGGCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS TCA 72 bp | CCTCTTAAAGTTACATTCGTTCTTCCGCTCAAATCCTaGTCTGGTCCATTAAAGAGTGTTCGCAGACAAAGT | + |
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Preference number: 6 (lower is better) Translates to: PLKVTFVLPLKS*SGPLKSVRRQS Trigger: ACTTTGTCTGCGAACACTCTTTAATGGACCAGATCAGGATTTGAGCGGAAGAACGAATGTAACTTTAAGAGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000612781.1 ENST00000620465.4 |
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| CDS GCA 72 bp | CAGCAAAATGTACTCAGCTTCAATCACAAATACGACTaGTTAAAACTGCAGAAATTTCCTCAACACTCAGCC | + |
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Preference number: 6 (lower is better) Translates to: QQNVLSFNHKYD*LKLQKFPQHSA Trigger: GGCTGAGTGTTGAGGAAATTTCTGCAGTTTTAAGCAGTCGTATTTGTGATTGAAGCTGAGTACATTTTGCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000534336.1 ENST00000613376.1 ENST00000618132.1 |
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| CDS CAA 72 bp | AAGGTTACCATAAGTAAGTTCCAGAAAAACAACATATaGCCGACCTCACGGATTTTTACCAACCACTCGCTT | + |
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Preference number: 6 (lower is better) Translates to: KVTISKFQKNNI*PTSRIFTNHSL Trigger: AAGCGAGTGGTTGGTAAAAATCCGTGAGGTCGGCAATATGTTGTTTTTCTGGAACTTACTTATGGTAACCTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS TCA 72 bp | AACTTAACTTCAACATTTGGCCTACTCAAGCTCTTCTaGAGTTCTCCTGAGATGACTGAATATGAACCAAAG | + |
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Preference number: 6 (lower is better) Translates to: NLTSTFGLLKLF*SSPEMTEYEPK Trigger: CTTTGGTTCATATTCAGTCATCTCAGGAGAACTTCAGAAGAGCTTGAGTAGGCCAAATGTTGAAGTTAAGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS CAA 90 bp | TACTTTGAAGGAAAACAGATACAGTATCAAATTATGACACTTTCCTaGCCCAAATTAATGCACTGGTACACCCAGTGGCTCATATTTAAC | + |
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Preference number: 6 (lower is better) Translates to: YFEGKQIQYQIMTLS*PKLMHWYTQWLIFN Trigger: GTTAAATATGAGCCACTGGGTGTACCAGTGCATTAATTTGGGCAAGGAAAGTGTCATAATTTGATACTGTATCTGTTTTCCTTCAAAGTA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000508832.2 ENST00000534336.1 ENST00000616527.4 ENST00000619449.2 |
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| CDS TCA 72 bp | GAATCTCAGGGTTATGCTTATTCCCCAATGGAGGTATaGCATATAATCTTTTCTGCCTTTACTTATCAATTC | + |
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Preference number: 6 (lower is better) Translates to: ESQGYAYSPMEV*HIIFSAFTYQF Trigger: GAATTGATAAGTAAAGGCAGAAAAGATTATATGTCATACCTCCATTGGGGAATAAGCATAACCCTGAGATTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000508832.2 ENST00000534336.1 ENST00000619449.2 |
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| CDS GCA 72 bp | ATTTTAGCAGTAACATCTGATTCTAACAGCACATCATaGTATTCCTTTCATAGAGCCTTCAGAGATTCAATG | + |
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Preference number: 6 (lower is better) Translates to: ILAVTSDSNSTS*YSFHRAFRDSM Trigger: CATTGAATCTCTGAAGGCTCTATGAAAGGAATAGCATGATGTGCTGTTAGAATCAGATGTTACTGCTAAAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000508832.2 ENST00000534336.1 ENST00000619449.2 |
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| CDS TCA 72 bp | ATCAACAAAAGCCCACCCTCTAAGAGACATTCAAGCTaGACTATCACAATTCTTAATCAGTTACAATTTACA | + |
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Preference number: 6 (lower is better) Translates to: INKSPPSKRHSS*TITILNQLQFT Trigger: TGTAAATTGTAACTGATTAAGAATTGTGATAGTTCAGCTTGAATGTCTCTTAGAGGGTGGGCTTTTGTTGAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000534336.1 ENST00000619449.2 |
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| CDS GCA 72 bp | ATAATGTTCTCATCAGTAGTAAGAATCTCAGGGTTATaGTTATTCCCCAATGGAGGTATGACATATAATCTT | + |
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Preference number: 6 (lower is better) Translates to: IMFSSVVRISGL*LFPNGGMTYNL Trigger: AAGATTATATGTCATACCTCCATTGGGGAATAAGCATAACCCTGAGATTCTTACTACTGATGAGAACATTAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000508832.2 ENST00000534336.1 ENST00000618925.1 ENST00000619449.2 |
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