Pregenerated sensors for MAGED4B (Homo sapiens)
Ensembl gene IDs: ENSG00000187243Ensembl transcript IDs: ENST00000335504.9, ENST00000360134.10, ENST00000470594.5, ENST00000481096.6, ENST00000485287.5, ENST00000486010.1, ENST00000490581.6, ENST00000497164.5
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGGCGCCAGCTCTGGCAGCATTTCTGGTCCGGATGGTGGAGCTGGTaGTGGGGCCATCTAGGACGCTGGTGCTGGCCCCTCCATTGGTGC | + |
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Preference number: 1 (lower is better) Translates to: WRQLWQHFWSGWWSW*WGHLGRWCWPLHWC Trigger: GCACCAATGGAGGGGCCAGCACCAGCGTCCTAGATGGCCCCAGCACCAGCTCCACCATCCGGACCAGAAATGCTGCCAGAGCTGGCGCCA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000490581.6 |
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| 3UTR CCA 90 bp | CGCCAGCTCTGGCAGCATTTCTGGTCCGGATGGTGGAGCTGGTGCTaGGGCCATCTAGGACGCTGGTGCTGGCCCCTCCATTGGTGCCAC | + |
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Preference number: 1 (lower is better) Translates to: RQLWQHFWSGWWSWC*GHLGRWCWPLHWCH Trigger: GTGGCACCAATGGAGGGGCCAGCACCAGCGTCCTAGATGGCCCCAGCACCAGCTCCACCATCCGGACCAGAAATGCTGCCAGAGCTGGCG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490581.6 |
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| 3UTR GCA 72 bp | CTCTGGCAGCATTTCTGGTCCGGATGGTGGAGCTGGTaGTGGGGCCATCTAGGACGCTGGTGCTGGCCCCTC | + |
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Preference number: 3 (lower is better) Translates to: LWQHFWSGWWSW*WGHLGRWCWPL Trigger: GAGGGGCCAGCACCAGCGTCCTAGATGGCCCCAGCACCAGCTCCACCATCCGGACCAGAAATGCTGCCAGAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000490581.6 |
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| 3UTR CCA 72 bp | CAGCTCTGGCAGCATTTCTGGTCCGGATGGTGGAGCTaGTGCTGGGGCCATCTAGGACGCTGGTGCTGGCCC | + |
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Preference number: 3 (lower is better) Translates to: QLWQHFWSGWWS*CWGHLGRWCWP Trigger: GGGCCAGCACCAGCGTCCTAGATGGCCCCAGCACCAGCTCCACCATCCGGACCAGAAATGCTGCCAGAGCTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490581.6 |
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| CDS-3UTR GCA 90 bp | CCCGATATTCATCTGGGCCCTCATCTGGGCCCTGGCATGTTCCTCGGCCATATCCATCTAGGACGCTGGTaGTGGCCCCTCCATTGGTGC | + |
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Preference number: 4 (lower is better) Translates to: PDIHLGPHLGPGMFLGHIHLGRW*WPLHWC Trigger: GCACCAATGGAGGGGCCAGCACCAGCGTCCTAGATG...GATATGGCCGAGGAACATGCCAGGGCCCAGATGAGGGCCCAGATGAATATCGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490581.6 |
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| CDS-3UTR GCA 90 bp | CCCGATATTCATCTGGGCCCTCATCTGGGCCCTGGCATGTTCCTCGGCCATATCTCGCCGAGGAATGGGTaGCTCACCCTCTTTGGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: PDIHLGPHLGPGMFLGHISPRNG*LTLFGQ Trigger: CTGGCCAAAGAGGGTGAGGCACCCATTCCTCGGCGA...GATATGGCCGAGGAACATGCCAGGGCCCAGATGAGGGCCCAGATGAATATCGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490581.6 |
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| CDS-3UTR GCA 90 bp | CCCCGATATTCATCTGGGCCCTCATCTGGGCCCTGGCATGTTCCTCGGCCATATGCAGTTCGTCAACGGTaGTGGATCCAGGAGAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: PRYSSGPSSGPWHVPRPYAVRQR*WIQEKK Trigger: CTTCTTCTCCTGGATCCAGCACCGTTGACGAACTGC...ATATGGCCGAGGAACATGCCAGGGCCCAGATGAGGGCCCAGATGAATATCGGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490581.6 |
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| CDS TCA 90 bp | GAGGCCCTTACCAGCTGGGAGCCATGCTCAGAGGCGTCTCCTCTCTaGGCTCCGGGTTCCTTAGGTGTAAACCAGGGGGAACTCTTGTGT | + |
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Preference number: 5 (lower is better) Translates to: EALTSWEPCSEASPL*APGSLGVNQGELLC Trigger: ACACAAGAGTTCCCCCTGGTTTACACCTAAGGAACCCGGAGCTCAGAGAGGAGACGCCTCTGAGCATGGCTCCCAGCTGGTAAGGGCCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000481096.6 |
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| CDS CCA 72 bp | GAGCCGCACGGTTGGAGGCGGCGGCGCGGGCTACGTTaGCAGCACGGGCGGCCGTCTCATTGGCAAGTGTTT | + |
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Preference number: 6 (lower is better) Translates to: EPHGWRRRRGLR*QHGRPSHWQVF Trigger: AAACACTTGCCAATGAGACGGCCGCCCGTGCTGCCAACGTAGCCCGCGCCGCCGCCTCCAACCGTGCGGCTC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000335504.9 ENST00000360134.10 ENST00000470594.5 ENST00000485287.5 ENST00000486010.1 ENST00000497164.5 |
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| CDS CCA 72 bp | GGAGAGGGTGGCCCCTGGCCTGAAAATCAGGAGAGTTaGGCTGAGGCCCTTACCAGCTGGGAGCCATGCTCA | + |
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Preference number: 6 (lower is better) Translates to: GEGGPWPENQES*AEALTSWEPCS Trigger: TGAGCATGGCTCCCAGCTGGTAAGGGCCTCAGCCCAACTCTCCTGATTTTCAGGCCAGGGGCCACCCTCTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000481096.6 |
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