Pregenerated sensors for LSM1 (Homo sapiens)
Ensembl gene IDs: ENSG00000175324Ensembl transcript IDs: ENST00000311351.9, ENST00000520755.5, ENST00000522515.5, ENST00000523511.1
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AGGACCACATTTTCTCCTCTGACCACAAAAATCCCTCGAGGAATATCACCGTATATACGCTCCACAGTCTaGTGTAGCACTAAGTTTGGT | + |
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Preference number: 2 (lower is better) Translates to: RTTFSPLTTKIPRGISPYIRSTV*CSTKFG Trigger: ACCAAACTTAGTGCTACATCAGACTGTGGAGCGTAT...ATACGGTGATATTCCTCGAGGGATTTTTGTGGTCAGAGGAGAAAATGTGGTCCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000523511.1 |
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| 3UTR-3UTR GCA 90 bp | AGGACCACATTTTCTCCTCTGACCACAAAAATCCCTCGAGGAATATCACCGTATTTGGTTTCTTCCTCATaGTCAAATCCAGTGATTTCG | + |
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Preference number: 2 (lower is better) Translates to: RTTFSPLTTKIPRGISPYLVSSS*SNPVIS Trigger: CGAAATCACTGGATTTGAGCATGAGGAAGAAACCAA...ATACGGTGATATTCCTCGAGGGATTTTTGTGGTCAGAGGAGAAAATGTGGTCCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000523511.1 |
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| 3UTR-3UTR CAA 90 bp | AGTAGGACCACATTTTCTCCTCTGACCACAAAAATCCCTCGAGGAATATCACCGGATGTAGCACTAAGTTaGGTTTCTTCCTCATGCTCA | + |
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Preference number: 3 (lower is better) Translates to: SRTTFSPLTTKIPRGISPDVALS*VSSSCS Trigger: TGAGCATGAGGAAGAAACCAAACTTAGTGCTACATC...CGGTGATATTCCTCGAGGGATTTTTGTGGTCAGAGGAGAAAATGTGGTCCTACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000523511.1 |
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| 3UTR GCA 72 bp | CAGTCTGATGTAGCACTAAGTTTGGTTTCTTCCTCATaGTCAAATCCAGTGATTTCGCAGATATCCAATAAA | + |
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Preference number: 3 (lower is better) Translates to: QSDVALSLVSSS*SNPVISQISNK Trigger: TTTATTGGATATCTGCGAAATCACTGGATTTGAGCATGAGGAAGAAACCAAACTTAGTGCTACATCAGACTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000523511.1 |
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| CDS-3UTR GCA 90 bp | AGTAGGACCACATTTTCTCCTCTGACCACAAAAATCCCTCGAGGAATATCACCGCGAGACCAGCACTTCTaGCCCGGCTTTCAGCCGCCG | + |
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Preference number: 4 (lower is better) Translates to: SRTTFSPLTTKIPRGISPRDQHF*PGFQPP Trigger: CGGCGGCTGAAAGCCGGGGCAGAAGTGCTGGTCTCG...CGGTGATATTCCTCGAGGGATTTTTGTGGTCAGAGGAGAAAATGTGGTCCTACT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000523511.1 |
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| CDS-3UTR CCA 90 bp | CAGTCTGATGTAGCACTAAGTTTGGTTTCTTCCTCATGCTCAAATCCAGTGATTCAGTCGCCGCCTCGGTaGGACCAAGCCCGGAATCCC | + |
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Preference number: 4 (lower is better) Translates to: QSDVALSLVSSSCSNPVIQSPPR*DQARNP Trigger: GGGATTCCGGGCTTGGTCCCACCGAGGCGGCGACTG...AATCACTGGATTTGAGCATGAGGAAGAAACCAAACTTAGTGCTACATCAGACTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000523511.1 |
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| CDS-3UTR GCA 90 bp | AGTAGGACCACATTTTCTCCTCTGACCACAAAAATCCCTCGAGGAATATCACCGGAAATAATGCTGCAATaGACAGCGGCGGGAGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: SRTTFSPLTTKIPRGISPEIMLQ*TAAGGQ Trigger: CTGGCCTCCCGCCGCTGTGCATTGCAGCATTATTTC...CGGTGATATTCCTCGAGGGATTTTTGTGGTCAGAGGAGAAAATGTGGTCCTACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000523511.1 |
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| CDS-3UTR CCA 90 bp | AGTAGGACCACATTTTCTCCTCTGACCACAAAAATCCCTCGAGGAATATCACCGTATCTGCTCGAGGAATaGAAAGACCTCGGTCCTTCA | + |
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Preference number: 4 (lower is better) Translates to: SRTTFSPLTTKIPRGISPYLLEE*KDLGPS Trigger: TGAAGGACCGAGGTCTTTCCATTCCTCGAGCAGATA...CGGTGATATTCCTCGAGGGATTTTTGTGGTCAGAGGAGAAAATGTGGTCCTACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000523511.1 |
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| CDS-3UTR TCA 90 bp | CCTAGTAGGACCACATTTTCTCCTCTGACCACAAAAATCCCTCGAGGAATATCACCACATTTTCTCCTCTaGCCACAAAAATCCCTCGAG | + |
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Preference number: 4 (lower is better) Translates to: PSRTTFSPLTTKIPRGISPHFLL*PQKSLE Trigger: CTCGAGGGATTTTTGTGGTCAGAGGAGAAAATGTGG...TGATATTCCTCGAGGGATTTTTGTGGTCAGAGGAGAAAATGTGGTCCTACTAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENST00000523511.1 |
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| CDS-3UTR TCA 90 bp | AGTAGGACCACATTTTCTCCTCTGACCACAAAAATCCCTCGAGGAATATCACCGATACGCTCCACAGTCTaGTGTAGCACTAAGTTTGGT | + |
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Preference number: 4 (lower is better) Translates to: SRTTFSPLTTKIPRGISPIRSTV*CSTKFG Trigger: ACCAAACTTAGTGCTACATCAGACTGTGGAGCGTAT...CGGTGATATTCCTCGAGGGATTTTTGTGGTCAGAGGAGAAAATGTGGTCCTACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000523511.1 |
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| CDS-3UTR TCA 90 bp | CCTAGTAGGACCACATTTTCTCCTCTGACCACAAAAATCCCTCGAGGAATATCACATGCTCAAATCCAGTaGTTTCGCAGATATCCAATA | + |
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Preference number: 4 (lower is better) Translates to: PSRTTFSPLTTKIPRGISHAQIQ*FRRYPI Trigger: TATTGGATATCTGCGAAATCACTGGATTTGAGCATG...TGATATTCCTCGAGGGATTTTTGTGGTCAGAGGAGAAAATGTGGTCCTACTAGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000523511.1 |
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| CDS-3UTR GCA 90 bp | CAGTCTGATGTAGCACTAAGTTTGGTTTCTTCCTCATGCTCAAATCCAGTGATTTTGGTTTCTTCCTCATaGTCAAATCCAGTGATTTCG | + |
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Preference number: 4 (lower is better) Translates to: QSDVALSLVSSSCSNPVILVSSS*SNPVIS Trigger: CGAAATCACTGGATTTGAGCATGAGGAAGAAACCAA...AATCACTGGATTTGAGCATGAGGAAGAAACCAAACTTAGTGCTACATCAGACTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000523511.1 |
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| CDS GCA 90 bp | CCTCGGTGGGACCAAGCCCGGAATCCCGACCGAGACCAGCACTTCTaGCCCGGCTTTCAGCCGCCGGGGGCTGCCGGAAGCTCCTCCATA | + |
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Preference number: 5 (lower is better) Translates to: PRWDQARNPDRDQHF*PGFQPPGAAGSSSI Trigger: TATGGAGGAGCTTCCGGCAGCCCCCGGCGGCTGAAAGCCGGGGCAGAAGTGCTGGTCTCGGTCGGGATTCCGGGCTTGGTCCCACCGAGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000311351.9 ENST00000520755.5 ENST00000522515.5 |
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| CDS CCA 90 bp | AGCGCGTCCAAAACCTCTTCCCTCCTACCGCAGTCGCCGCCTCGGTaGGACCAAGCCCGGAATCCCGACCGAGACCAGCACTTCTGCCCC | + |
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Preference number: 5 (lower is better) Translates to: SASKTSSLLPQSPPR*DQARNPDRDQHFCP Trigger: GGGGCAGAAGTGCTGGTCTCGGTCGGGATTCCGGGCTTGGTCCCACCGAGGCGGCGACTGCGGTAGGAGGGAAGAGGTTTTGGACGCGCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000311351.9 ENST00000520755.5 ENST00000522515.5 ENST00000523511.1 |
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| CDS CCA 90 bp | CCTCTGCTGCCGCGATCCACGGAAGCAAGAATGAGTTCCATCGCTTaGGGCTCACCAGCTAGAGGGCTGGCGGAGGCTGCGAGGGGCAGA | + |
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Preference number: 5 (lower is better) Translates to: PLLPRSTEARMSSIA*GSPARGLAEAARGR Trigger: TCTGCCCCTCGCAGCCTCCGCCAGCCCTCTAGCTGGTGAGCCCCAAGCGATGGAACTCATTCTTGCTTCCGTGGATCGCGGCAGCAGAGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000522515.5 |
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| CDS TCA 90 bp | GTGTGTACCGCAGCTGTGGAGGACATCGACGCGGAACGCCCGGATTaGGCTCAGAACACACCGGCCCCGCCCGGGACTCATTCTACAAGC | + |
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Preference number: 5 (lower is better) Translates to: VCTAAVEDIDAERPD*AQNTPAPPGTHSTS Trigger: GCTTGTAGAATGAGTCCCGGGCGGGGCCGGTGTGTTCTGAGCTCAATCCGGGCGTTCCGCGTCGATGTCCTCCACAGCTGCGGTACACAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000522515.5 |
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| CDS TCA 90 bp | CTTTCGTGTTCGGGCCTCTGCTGCCGCGATCCACGGAAGCAAGAATaGGTTCCATCGCTTGGGGCTCACCAGCTAGAGGGCTGGCGGAGG | + |
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Preference number: 5 (lower is better) Translates to: LSCSGLCCRDPRKQE*VPSLGAHQLEGWRR Trigger: CCTCCGCCAGCCCTCTAGCTGGTGAGCCCCAAGCGATGGAACTCATTCTTGCTTCCGTGGATCGCGGCAGCAGAGGCCCGAACACGAAAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000522515.5 |
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| CDS CCA 90 bp | GTAGCAGCAGGCTACTGGGTGGGCAAGCGGTGTGTACCGCAGCTGTaGAGGACATCGACGCGGAACGCCCGGATTGAGCTCAGAACACAC | + |
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Preference number: 5 (lower is better) Translates to: VAAGYWVGKRCVPQL*RTSTRNARIELRTH Trigger: GTGTGTTCTGAGCTCAATCCGGGCGTTCCGCGTCGATGTCCTCCACAGCTGCGGTACACACCGCTTGCCCACCCAGTAGCCTGCTGCTAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000522515.5 |
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| CDS-3UTR CAA 90 bp | CAGTCTGATGTAGCACTAAGTTTGGTTTCTTCCTCATGCTCAAATCCAGTGATTAGAACCAAGTGCTTTTaGTCAATGTCCTCGATGAGG | + |
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Preference number: 5 (lower is better) Translates to: QSDVALSLVSSSCSNPVIRTKCF*SMSSMR Trigger: CCTCATCGAGGACATTGACAAAAAGCACTTGGTTCT...AATCACTGGATTTGAGCATGAGGAAGAAACCAAACTTAGTGCTACATCAGACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000523511.1 |
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| CDS-3UTR CAA 90 bp | CAGTCTGATGTAGCACTAAGTTTGGTTTCTTCCTCATGCTCAAATCCAGTGATTGATGTAGCACTAAGTTaGGTTTCTTCCTCATGCTCA | + |
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Preference number: 5 (lower is better) Translates to: QSDVALSLVSSSCSNPVIDVALS*VSSSCS Trigger: TGAGCATGAGGAAGAAACCAAACTTAGTGCTACATC...AATCACTGGATTTGAGCATGAGGAAGAAACCAAACTTAGTGCTACATCAGACTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000523511.1 |
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| CDS GCA 72 bp | GACCAAGCCCGGAATCCCGACCGAGACCAGCACTTCTaGCCCGGCTTTCAGCCGCCGGGGGCTGCCGGAAGC | + |
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Preference number: 6 (lower is better) Translates to: DQARNPDRDQHF*PGFQPPGAAGS Trigger: GCTTCCGGCAGCCCCCGGCGGCTGAAAGCCGGGGCAGAAGTGCTGGTCTCGGTCGGGATTCCGGGCTTGGTC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000311351.9 ENST00000520755.5 ENST00000522515.5 ENST00000523511.1 |
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| CDS CAA 72 bp | CGCAGCTGTGGAGGACATCGACGCGGAACGCCCGGATaGAGCTCAGAACACACCGGCCCCGCCCGGGACTCA | + |
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Preference number: 6 (lower is better) Translates to: RSCGGHRRGTPG*SSEHTGPARDS Trigger: TGAGTCCCGGGCGGGGCCGGTGTGTTCTGAGCTCAATCCGGGCGTTCCGCGTCGATGTCCTCCACAGCTGCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000522515.5 |
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| CDS TCA 72 bp | GCAGCTGTGGAGGACATCGACGCGGAACGCCCGGATTaGGCTCAGAACACACCGGCCCCGCCCGGGACTCAT | + |
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Preference number: 6 (lower is better) Translates to: AAVEDIDAERPD*AQNTPAPPGTH Trigger: ATGAGTCCCGGGCGGGGCCGGTGTGTTCTGAGCTCAATCCGGGCGTTCCGCGTCGATGTCCTCCACAGCTGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000522515.5 |
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| CDS CCA 72 bp | AAAACCTCTTCCCTCCTACCGCAGTCGCCGCCTCGGTaGGACCAAGCCCGGAATCCCGACCGAGACCAGCAC | + |
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Preference number: 6 (lower is better) Translates to: KTSSLLPQSPPR*DQARNPDRDQH Trigger: GTGCTGGTCTCGGTCGGGATTCCGGGCTTGGTCCCACCGAGGCGGCGACTGCGGTAGGAGGGAAGAGGTTTT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000311351.9 ENST00000520755.5 ENST00000522515.5 ENST00000523511.1 |
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| CDS CCA 72 bp | GGCTACTGGGTGGGCAAGCGGTGTGTACCGCAGCTGTaGAGGACATCGACGCGGAACGCCCGGATTGAGCTC | + |
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Preference number: 6 (lower is better) Translates to: GYWVGKRCVPQL*RTSTRNARIEL Trigger: GAGCTCAATCCGGGCGTTCCGCGTCGATGTCCTCCACAGCTGCGGTACACACCGCTTGCCCACCCAGTAGCC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000522515.5 |
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| CDS GCA 72 bp | CCAGCACTTCTGCCCCGGCTTTCAGCCGCCGGGGGCTaGCGGAAGCTCCTCCATATTACCCTTACCCACTTC | + |
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Preference number: 6 (lower is better) Translates to: PALLPRLSAAGG*RKLLHITLTHF Trigger: GAAGTGGGTAAGGGTAATATGGAGGAGCTTCCGGCAGCCCCCGGCGGCTGAAAGCCGGGGCAGAAGTGCTGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000520755.5 ENST00000522515.5 |
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| CDS CCA 72 bp | CCGCGATCCACGGAAGCAAGAATGAGTTCCATCGCTTaGGGCTCACCAGCTAGAGGGCTGGCGGAGGCTGCG | + |
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Preference number: 6 (lower is better) Translates to: PRSTEARMSSIA*GSPARGLAEAA Trigger: CGCAGCCTCCGCCAGCCCTCTAGCTGGTGAGCCCCAAGCGATGGAACTCATTCTTGCTTCCGTGGATCGCGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000522515.5 |
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| CDS CAA 90 bp | GGTGTGTACCGCAGCTGTGGAGGACATCGACGCGGAACGCCCGGATaGAGCTCAGAACACACCGGCCCCGCCCGGGACTCATTCTACAAG | + |
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Preference number: 6 (lower is better) Translates to: GVYRSCGGHRRGTPG*SSEHTGPARDSFYK Trigger: CTTGTAGAATGAGTCCCGGGCGGGGCCGGTGTGTTCTGAGCTCAATCCGGGCGTTCCGCGTCGATGTCCTCCACAGCTGCGGTACACACC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000522515.5 |
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| CDS TCA 72 bp | TCGGGCCTCTGCTGCCGCGATCCACGGAAGCAAGAATaGGTTCCATCGCTTGGGGCTCACCAGCTAGAGGGC | + |
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Preference number: 6 (lower is better) Translates to: SGLCCRDPRKQE*VPSLGAHQLEG Trigger: GCCCTCTAGCTGGTGAGCCCCAAGCGATGGAACTCATTCTTGCTTCCGTGGATCGCGGCAGCAGAGGCCCGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000522515.5 |
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| CDS TCA 72 bp | TCTCTAGGTATTCCGATCCATCCACCGGTAACACGCTaGTACTTCGAAATACTGCAGGCAGGAGTGGACGGG | + |
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Preference number: 6 (lower is better) Translates to: SLGIPIHPPVTR*YFEILQAGVDG Trigger: CCCGTCCACTCCTGCCTGCAGTATTTCGAAGTATCAGCGTGTTACCGGTGGATGGATCGGAATACCTAGAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000522515.5 |
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