RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LSAMP (Homo sapiens)

Ensembl gene IDs: ENSG00000185565

Ensembl transcript IDs: ENST00000333617.8, ENST00000473171.5, ENST00000474851.1, ENST00000475403.2, ENST00000490035.7, ENST00000498645.1, ENST00000539563.5

Found 652 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTGATGCCATGTGACAGCCATGGATGTAGGGAGGACTCTGCTCCTTaGCTCTTTCCCCGCCATCTCCCCCAGCAACTTGTTACAGCCGCA +
Preference number: 1 (lower is better)
Translates to: LMPCDSHGCREDSAP*LFPRHLPQQLVTAA
Trigger: TGCGGCTGTAACAAGTTGCTGGGGGAGATGGCGGGGAAAGAGGCAAGGAGCAGAGTCCTCCCTACATCCATGGCTGTCACATGGCATCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CCA 90 bp GGTAGCTTGGGATTGCTGCAGCGTGCCATGAAGCTAGGACTTCCATaGGTTTTCTTCACTTGCAAGAAGCATATTTGTACTGTGCCTGGC +
Preference number: 1 (lower is better)
Translates to: GSLGLLQRAMKLGLP*VFFTCKKHICTVPG
Trigger: GCCAGGCACAGTACAAATATGCTTCTTGCAAGTGAAGAAAACCCATGGAAGTCCTAGCTTCATGGCACGCTGCAGCAATCCCAAGCTACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR GCA 90 bp ACACTTGGAGACCTTCCTGTTTCTGGGGATTTACTCAACACATGCTaGTCATTTTCACAGTGGAGCAGGGCCTACCCTGTTAAATGCCAG +
Preference number: 1 (lower is better)
Translates to: TLGDLPVSGDLLNTC*SFSQWSRAYPVKCQ
Trigger: CTGGCATTTAACAGGGTAGGCCCTGCTCCACTGTGAAAATGAGCAGCATGTGTTGAGTAAATCCCCAGAAACAGGAAGGTCTCCAAGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CCA 90 bp TGTATTGTCTTGCCCATTTCTTACAGTTCAGCCTTTGAACCTGCCTaGGACCCCATGCTTACCGCCATCAGCACAAGCAAAGAGTTTCCA +
Preference number: 1 (lower is better)
Translates to: CIVLPISYSSAFEPA*DPMLTAISTSKEFP
Trigger: TGGAAACTCTTTGCTTGTGCTGATGGCGGTAAGCATGGGGTCCCAGGCAGGTTCAAAGGCTGAACTGTAAGAAATGGGCAAGACAATACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR GCA 90 bp CTACAGCACAATGAGTCTATGTACACATGGACCATTCCCTTGGCATaGTTTAGAGAGAGACACACACACGCTCACACACATGTACACCCA +
Preference number: 1 (lower is better)
Translates to: LQHNESMYTWTIPLA*FRERHTHAHTHVHP
Trigger: TGGGTGTACATGTGTGTGAGCGTGTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACATAGACTCATTGTGCTGTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR GCA 90 bp TTGACACTTGGAGACCTTCCTGTTTCTGGGGATTTACTCAACACATaGTGCTCATTTTCACAGTGGAGCAGGGCCTACCCTGTTAAATGC +
Preference number: 1 (lower is better)
Translates to: LTLGDLPVSGDLLNT*CSFSQWSRAYPVKC
Trigger: GCATTTAACAGGGTAGGCCCTGCTCCACTGTGAAAATGAGCAGCATGTGTTGAGTAAATCCCCAGAAACAGGAAGGTCTCCAAGTGTCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CCA 90 bp ATGAACAATTTCCATTCTCTGGTGAAGAGCAAAGACTTAGGGAAGTaGGTTCAAAAGAGGCTCCTGGTAGCTTGGGATTGCTGCAGCGTG +
Preference number: 1 (lower is better)
Translates to: MNNFHSLVKSKDLGK*VQKRLLVAWDCCSV
Trigger: CACGCTGCAGCAATCCCAAGCTACCAGGAGCCTCTTTTGAACCCACTTCCCTAAGTCTTTGCTCTTCACCAGAGAATGGAAATTGTTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CCA 90 bp AGGATCTCCAAGTGGTTCATCATTCTTTCACTGGGAGTTGACACTTaGAGACCTTCCTGTTTCTGGGGATTTACTCAACACATGCTGCTC +
Preference number: 1 (lower is better)
Translates to: RISKWFIILSLGVDT*RPSCFWGFTQHMLL
Trigger: GAGCAGCATGTGTTGAGTAAATCCCCAGAAACAGGAAGGTCTCCAAGTGTCAACTCCCAGTGAAAGAATGATGAACCACTTGGAGATCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR TCA 90 bp AACAGTTGGGACAATCTCCACTTAGATCCTGAAAGACCAAAGAGGTaGCTTGAGCAGGATATAAACCTTGAACTGTTCCTGTGGGTCTGC +
Preference number: 1 (lower is better)
Translates to: NSWDNLHLDPERPKR*LEQDINLELFLWVC
Trigger: GCAGACCCACAGGAACAGTTCAAGGTTTATATCCTGCTCAAGTCACCTCTTTGGTCTTTCAGGATCTAAGTGGAGATTGTCCCAACTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CCA 90 bp AGTATCTACAGCACAATGAGTCTATGTACACATGGACCATTCCCTTaGCATGCTTTAGAGAGAGACACACACACGCTCACACACATGTAC +
Preference number: 1 (lower is better)
Translates to: SIYSTMSLCTHGPFP*HALERDTHTLTHMY
Trigger: GTACATGTGTGTGAGCGTGTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACATAGACTCATTGTGCTGTAGATACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CCA 90 bp TACAATGCAGGACAGTATCTACAGCACAATGAGTCTATGTACACATaGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACACGCT +
Preference number: 1 (lower is better)
Translates to: YNAGQYLQHNESMYT*TIPLACFRERHTHA
Trigger: AGCGTGTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACATAGACTCATTGTGCTGTAGATACTGTCCTGCATTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CCA 90 bp GAGCAGGATATAAACCTTGAACTGTTCCTGTGGGTCTGCTTCCTTTaGCTAAGGCAACCTCATATTTGGAGCTTTAGTCGTAATTCTTCC +
Preference number: 1 (lower is better)
Translates to: EQDINLELFLWVCFL*LRQPHIWSFSRNSS
Trigger: GGAAGAATTACGACTAAAGCTCCAAATATGAGGTTGCCTTAGCCAAAGGAAGCAGACCCACAGGAACAGTTCAAGGTTTATATCCTGCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR TCA 90 bp AGAGCCAGCTCTCTCGGCAAGACATTTCCTAAGAAATCCTTCTGGTaGTGTGGTAACACCAAGCTTTGTGGTACTCATAAAATTTCTGTC +
Preference number: 1 (lower is better)
Translates to: RASSLGKTFPKKSFW*CGNTKLCGTHKISV
Trigger: GACAGAAATTTTATGAGTACCACAAAGCTTGGTGTTACCACATCACCAGAAGGATTTCTTAGGAAATGTCTTGCCGAGAGAGCTGGCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CCA 90 bp TTAAATAGAGCAGGGAAGATGAATATCATGCAATTCTTAGCACCCTaGCATAGGATAACAGTGGACCACCATGAACAGTGGTGCTGCAAA +
Preference number: 1 (lower is better)
Translates to: LNRAGKMNIMQFLAP*HRITVDHHEQWCCK
Trigger: TTTGCAGCACCACTGTTCATGGTGGTCCACTGTTATCCTATGCCAGGGTGCTAAGAATTGCATGATATTCATCTTCCCTGCTCTATTTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR TCA 90 bp CTTCACTTTCTTATTTCCCCCTTCATGTATAAACACACAAAGTTGTaGAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTG +
Preference number: 1 (lower is better)
Translates to: LHFLISPFMYKHTKL*NKRSPPSLSLSLSL
Trigger: CAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACAACTTTGTGTGTTTATACATGAAGGGGGAAATAAGAAAGTGAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
3UTR GCA 90 bp GAAATTTTCTCTCCTAGGTCACCTCGTCCACGTCATAATTCCTTATaGTGTTTGCTTACCCCATCGATAGTAGGCACTTTCATTTACAGT +
Preference number: 1 (lower is better)
Translates to: EIFSPRSPRPRHNSL*CLLTPSIVGTFIYS
Trigger: ACTGTAAATGAAAGTGCCTACTATCGATGGGGTAAGCAAACAGCATAAGGAATTATGACGTGGACGAGGTGACCTAGGAGAGAAAATTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR GCA 90 bp ATGGGACAAATGTTATTTAAGATTAGGGAGGAGGTAAAACAGGGCTaGTTAGGATCTCCAAGTGGTTCATCATTCTTTCACTGGGAGTTG +
Preference number: 1 (lower is better)
Translates to: MGQMLFKIREEVKQG*LGSPSGSSFFHWEL
Trigger: CAACTCCCAGTGAAAGAATGATGAACCACTTGGAGATCCTAAGCAGCCCTGTTTTACCTCCTCCCTAATCTTAAATAACATTTGTCCCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR GCA 90 bp TCACTCCTCTCAGTATATTATTTCCAACCAGTTGGTGCTTTTCAGTaGGGGGTTTCAAACTTTGATTACCAAGGGACAAGATTCTTGAAG +
Preference number: 1 (lower is better)
Translates to: SLLSVYYFQPVGAFQ*GVSNFDYQGTRFLK
Trigger: CTTCAAGAATCTTGTCCCTTGGTAATCAAAGTTTGAAACCCCGCACTGAAAAGCACCAACTGGTTGGAAATAATATACTGAGAGGAGTGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR GCA 90 bp AGGTACTTGGCCCAGGATGACAGAAAACTAATGTTTCCTTTCTTATaGACAATGTCCTCATTTGTTACATGCATAATACCCAGTCTGGCT +
Preference number: 1 (lower is better)
Translates to: RYLAQDDRKLMFPFL*TMSSFVTCIIPSLA
Trigger: AGCCAGACTGGGTATTATGCATGTAACAAATGAGGACATTGTGCATAAGAAAGGAAACATTAGTTTTCTGTCATCCTGGGCCAAGTACCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CCA 90 bp AACAATTGCACAGAGCATAATTACAATTCTGCAGTTGTAAAGCCCTaGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATT +
Preference number: 1 (lower is better)
Translates to: NNCTEHNYNSAVVKP*IVLILQEAPWVKVI
Trigger: AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTACAACTGCAGAATTGTAATTATGCTCTGTGCAATTGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CCA 90 bp GACAATAAGAAAGCCAGGTATATAATTAAGGCCTGTGACATGCCATaGGGATCTGTTCCTGAAGGTAATACTAACATCCAACTTCTAACA +
Preference number: 1 (lower is better)
Translates to: DNKKARYIIKACDMP*GSVPEGNTNIQLLT
Trigger: TGTTAGAAGTTGGATGTTAGTATTACCTTCAGGAACAGATCCCCATGGCATGTCACAGGCCTTAATTATATACCTGGCTTTCTTATTGTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR GCA 90 bp AAACAAGACTTTTTATCCAGCAAGGCAAAACCTTTGCTCAACAATTaGACAGAGCATAATTACAATTCTGCAGTTGTAAAGCCCTGGATA +
Preference number: 1 (lower is better)
Translates to: KQDFLSSKAKPLLNN*TEHNYNSAVVKPWI
Trigger: TATCCAGGGCTTTACAACTGCAGAATTGTAATTATGCTCTGTGCAATTGTTGAGCAAAGGTTTTGCCTTGCTGGATAAAAAGTCTTGTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR TCA 90 bp GAATATGGCTCACCTTCCCTATATTTTACTAGCTACCTTCTTGGATaGGAATTTGTTTTCTCTCCTATGTCAGAATCTGCTATAAACACT +
Preference number: 1 (lower is better)
Translates to: EYGSPSLYFTSYLLG*EFVFSPMSESAINT
Trigger: AGTGTTTATAGCAGATTCTGACATAGGAGAGAAAACAAATTCTCATCCAAGAAGGTAGCTAGTAAAATATAGGGAAGGTGAGCCATATTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR GCA 90 bp CTTGCTCACTTTCACTGTATTTTATCTGAAATAGGAAACAATCTCTaGTCAGGGGAATTCATGGGACAAATGTTATTTAAGATTAGGGAG +
Preference number: 1 (lower is better)
Translates to: LAHFHCILSEIGNNL*SGEFMGQMLFKIRE
Trigger: CTCCCTAATCTTAAATAACATTTGTCCCATGAATTCCCCTGAGCAGAGATTGTTTCCTATTTCAGATAAAATACAGTGAAAGTGAGCAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR GCA 90 bp CCTGAGAAAGATAACTCCCAATTAAAAATGATTCAGTCCCTCACTTaGAATATTCAGGATAAATGTGTGGAAACATTAGGCTACCAGATA +
Preference number: 1 (lower is better)
Translates to: PEKDNSQLKMIQSLT*NIQDKCVETLGYQI
Trigger: TATCTGGTAGCCTAATGTTTCCACACATTTATCCTGAATATTGCAAGTGAGGGACTGAATCATTTTTAATTGGGAGTTATCTTTCTCAGG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CCA 90 bp AGTGAGATGTACATGCTGGGTGAAAACAAATTCTTTCCTAAATTTTaGTTGGCGACATTTGAACAGCATAGCTACATGCAAATGAGAATA +
Preference number: 1 (lower is better)
Translates to: SEMYMLGENKFFPKF*LATFEQHSYMQMRI
Trigger: TATTCTCATTTGCATGTAGCTATGCTGTTCAAATGTCGCCAACCAAAATTTAGGAAAGAATTTGTTTTCACCCAGCATGTACATCTCACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CCA 90 bp ATCTGGTTCTTCTCTTATTTTTACAGCATCCAGATGTCCTTAGTGTaGTGTAGTCTTTACACAGCATACATTTGCTTAGTAGATATAAAC +
Preference number: 1 (lower is better)
Translates to: IWFFSYFYSIQMSLV*CSLYTAYICLVDIN
Trigger: GTTTATATCTACTAAGCAAATGTATGCTGTGTAAAGACTACACCACACTAAGGACATCTGGATGCTGTAAAAATAAGAGAAGAACCAGAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR GCA 90 bp TGCCTCTTTCCCCGCCATCTCCCCCAGCAACTTGTTACAGCCGCATCTCACAATGCACTTCCTAGCATTTaGGGCATGACTAGTGCTCTG +
Preference number: 2 (lower is better)
Translates to: CLFPRHLPQQLVTAASHNALPSI*GMTSAL
Trigger: CAGAGCACTAGTCATGCCGCAAATGCTAGGAAGTGC...ATTGTGAGATGCGGCTGTAACAAGTTGCTGGGGGAGATGGCGGGGAAAGAGGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CAA 90 bp AGGACTCTGCTCCTTGCCTCTTTCCCCGCCATCTCCCCCAGCAACTaGTTACAGCCGCATCTCACAATTACAATGCAGGACAGTATCTAC +
Preference number: 2 (lower is better)
Translates to: RTLLLASFPAISPSN*LQPHLTITMQDSIY
Trigger: GTAGATACTGTCCTGCATTGTAATTGTGAGATGCGGCTGTAACAAGTTGCTGGGGGAGATGGCGGGGAAAGAGGCAAGGAGCAGAGTCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CAA 90 bp GAGCAAAGACTTAGGGAAGTGGGTTCAAAAGAGGCTCCTGGTAGCTaGGGATTGCTGCAGCGTGCCATGAAGCTAGGACTTCCATGGGTT +
Preference number: 2 (lower is better)
Translates to: EQRLREVGSKEAPGS*GLLQRAMKLGLPWV
Trigger: AACCCATGGAAGTCCTAGCTTCATGGCACGCTGCAGCAATCCCAAGCTACCAGGAGCCTCTTTTGAACCCACTTCCCTAAGTCTTTGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CAA 90 bp AGACTTAGGGAAGTGGGTTCAAAAGAGGCTCCTGGTAGCTTGGGATaGCTGCAGCGTGCCATGAAGCTAGGACTTCCATGGGTTTTCTTC +
Preference number: 2 (lower is better)
Translates to: RLREVGSKEAPGSLG*LQRAMKLGLPWVFF
Trigger: GAAGAAAACCCATGGAAGTCCTAGCTTCATGGCACGCTGCAGCAATCCCAAGCTACCAGGAGCCTCTTTTGAACCCACTTCCCTAAGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR TCA 90 bp CTGAGGGAACAAACGGTGCTGACATGGCAGACATTTATTTCAATGGAGAAGTTCCTAGCATTTGCGGCATaGCTAGTGCTCTGGGGAGGG +
Preference number: 2 (lower is better)
Translates to: LREQTVLTWQTFISMEKFLAFAA*LVLWGG
Trigger: CCCTCCCCAGAGCACTAGTCATGCCGCAAATGCTAG...GAACTTCTCCATTGAAATAAATGTCTGCCATGTCAGCACCGTTTGTTCCCTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CAA 90 bp GCTGCAGCGTGCCATGAAGCTAGGACTTCCATGGGTTTTCTTCACTaGCAAGAAGCATATTTGTACTGTGCCTGGCTTTACATAGGGAGG +
Preference number: 2 (lower is better)
Translates to: AAACHEARTSMGFLH*QEAYLYCAWLYIGR
Trigger: CCTCCCTATGTAAAGCCAGGCACAGTACAAATATGCTTCTTGCAAGTGAAGAAAACCCATGGAAGTCCTAGCTTCATGGCACGCTGCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR TCA 90 bp GACACTTGGGGGTTGATACAACAGGCACATGAGCCCTTAAAACTCCTTCCTGTTTCTTTCACTGGGAGTTaGCACTTGGAGACCTTCCTG +
Preference number: 2 (lower is better)
Translates to: DTWGLIQQAHEPLKLLPVSFTGS*HLETFL
Trigger: CAGGAAGGTCTCCAAGTGTCAACTCCCAGTGAAAGA...AACAGGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATCAACCCCCAAGTGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR TCA 90 bp AGTCTATGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACTGGAGGGAGAGGGGATaGTCTCTAAAGTTGGAGAGA +
Preference number: 2 (lower is better)
Translates to: SLCTHGPFPWHALERDTHWRERG*SLKLER
Trigger: TCTCTCCAACTTTAGAGATCATCCCCTCTCCCTCCA...GTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACATAGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR GCA 90 bp GTAAAGCCCTGGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATTTTAAGGCCTGTGACATaGCATGGGGATCTGTTCCTG +
Preference number: 2 (lower is better)
Translates to: VKPWIVLILQEAPWVKVILRPVT*HGDLFL
Trigger: CAGGAACAGATCCCCATGGCATGTCACAGGCCTTAA...AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR GCA 90 bp GACACTTGGGGGTTGATACAACAGGCACATGAGCCCTTAAAACTCCTTCCTGTTTTTCCAACCAGTTGGTaGTTTTCAGTGCGGGGTTTC +
Preference number: 2 (lower is better)
Translates to: DTWGLIQQAHEPLKLLPVFPTSW*FSVRGF
Trigger: GAAACCCCGCACTGAAAAGCACCAACTGGTTGGAAA...AACAGGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATCAACCCCCAAGTGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CCA 90 bp TGCTGCTCATTTTCACAGTGGAGCAGGGCCTACCCTGTTAAATGCCAGGAAATAGAGTCTATGTACACATaGACCATTCCCTTGGCATGC +
Preference number: 2 (lower is better)
Translates to: CCSFSQWSRAYPVKCQEIESMYT*TIPLAC
Trigger: GCATGCCAAGGGAATGGTCCATGTGTACATAGACTC...TATTTCCTGGCATTTAACAGGGTAGGCCCTGCTCCACTGTGAAAATGAGCAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CCA 90 bp GTAAAGCCCTGGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATTGACCACCATGAACAGTaGTGCTGCAAACACCATCAG +
Preference number: 2 (lower is better)
Translates to: VKPWIVLILQEAPWVKVIDHHEQ*CCKHHQ
Trigger: CTGATGGTGTTTGCAGCACCACTGTTCATGGTGGTC...AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CCA 90 bp GACACTTGGGGGTTGATACAACAGGCACATGAGCCCTTAAAACTCCTTCCTGTTCTATTTCCCTTGCTTTaGGGTCGGGTGAGACAACTA +
Preference number: 2 (lower is better)
Translates to: DTWGLIQQAHEPLKLLPVLFPLL*GRVRQL
Trigger: TAGTTGTCTCACCCGACCCCAAAGCAAGGGAAATAG...AACAGGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATCAACCCCCAAGTGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CAA 90 bp GGCTGCTTAGGATCTCCAAGTGGTTCATCATTCTTTCACTGGGAGTaGACACTTGGAGACCTTCCTGTTTCTGGGGATTTACTCAACACA +
Preference number: 2 (lower is better)
Translates to: GCLGSPSGSSFFHWE*TLGDLPVSGDLLNT
Trigger: TGTGTTGAGTAAATCCCCAGAAACAGGAAGGTCTCCAAGTGTCAACTCCCAGTGAAAGAATGATGAACCACTTGGAGATCCTAAGCAGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR TCA 90 bp TGCTGCTCATTTTCACAGTGGAGCAGGGCCTACCCTGTTAAATGCCAGGAAATATTTACAGTGATATTCTaGGTGACTCCCCACTCGGTT +
Preference number: 2 (lower is better)
Translates to: CCSFSQWSRAYPVKCQEIFTVIF*VTPHSV
Trigger: AACCGAGTGGGGAGTCACTCAGAATATCACTGTAAA...TATTTCCTGGCATTTAACAGGGTAGGCCCTGCTCCACTGTGAAAATGAGCAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR TCA 90 bp GACACTTGGGGGTTGATACAACAGGCACATGAGCCCTTAAAACTCCTTCCTGTTTTTACAGTGATATTCTaGGTGACTCCCCACTCGGTT +
Preference number: 2 (lower is better)
Translates to: DTWGLIQQAHEPLKLLPVFTVIF*VTPHSV
Trigger: AACCGAGTGGGGAGTCACTCAGAATATCACTGTAAA...AACAGGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATCAACCCCCAAGTGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR TCA 90 bp GTAAAGCCCTGGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATTGAGGAGCACAAGGAGTaGACTGCTTTTCATTATGGC +
Preference number: 2 (lower is better)
Translates to: VKPWIVLILQEAPWVKVIEEHKE*TAFHYG
Trigger: GCCATAATGAAAAGCAGTTCACTCCTTGTGCTCCTC...AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR GCA 90 bp GTAAAGCCCTGGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATTACTGGGAAAAACATCTaGAGAGGAGCACAAGGAGTG +
Preference number: 2 (lower is better)
Translates to: VKPWIVLILQEAPWVKVITGKNI*RGAQGV
Trigger: CACTCCTTGTGCTCCTCTGCAGATGTTTTTCCCAGT...AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CCA 90 bp GTAAAGCCCTGGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATTCATGGACCATTCCCTTaGCATGCTTTAGAGAGAGAC +
Preference number: 2 (lower is better)
Translates to: VKPWIVLILQEAPWVKVIHGPFP*HALERD
Trigger: GTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATG...AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CCA 90 bp CTGAGGGAACAAACGGTGCTGACATGGCAGACATTTATTTCAATGGAGAAGTTCTGCTCATTTTCACAGTaGAGCAGGGCCTACCCTGTT +
Preference number: 2 (lower is better)
Translates to: LREQTVLTWQTFISMEKFCSFSQ*SRAYPV
Trigger: AACAGGGTAGGCCCTGCTCCACTGTGAAAATGAGCA...GAACTTCTCCATTGAAATAAATGTCTGCCATGTCAGCACCGTTTGTTCCCTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CCA 90 bp CTGAGGGAACAAACGGTGCTGACATGGCAGACATTTATTTCAATGGAGAAGTTCCTGGGAGTTGACACTTaGAGACCTTCCTGTTTCTGG +
Preference number: 2 (lower is better)
Translates to: LREQTVLTWQTFISMEKFLGVDT*RPSCFW
Trigger: CCAGAAACAGGAAGGTCTCCAAGTGTCAACTCCCAG...GAACTTCTCCATTGAAATAAATGTCTGCCATGTCAGCACCGTTTGTTCCCTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CAA 90 bp CAGTATCTACAGCACAATGAGTCTATGTACACATGGACCATTCCCTaGGCATGCTTTAGAGAGAGACACACACACGCTCACACACATGTA +
Preference number: 2 (lower is better)
Translates to: QYLQHNESMYTWTIP*ACFRERHTHAHTHV
Trigger: TACATGTGTGTGAGCGTGTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACATAGACTCATTGTGCTGTAGATACTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR TCA 90 bp GAAACCACAACCAACTCAGGGATGGAATCTGCGACTCTGGAGGATTCAAGAAGCACACACTTAAGTGTGTaGCTGCCTCTTCAATTTTTG +
Preference number: 2 (lower is better)
Translates to: ETTTNSGMESATLEDSRSTHLSV*LPLQFL
Trigger: CAAAAATTGAAGAGGCAGTCACACACTTAAGTGTGT...GCTTCTTGAATCCTCCAGAGTCGCAGATTCCATCCCTGAGTTGGTTGTGGTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CAA 90 bp GAAGCTAGGACTTCCATGGGTTTTCTTCACTTGCAAGAAGCATATTaGTACTGTGCCTGGCTTTACATAGGGAGGATTGTGCAGAGTAGA +
Preference number: 2 (lower is better)
Translates to: EARTSMGFLHLQEAY*YCAWLYIGRIVQSR
Trigger: TCTACTCTGCACAATCCTCCCTATGTAAAGCCAGGCACAGTACAAATATGCTTCTTGCAAGTGAAGAAAACCCATGGAAGTCCTAGCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR TCA 90 bp CTGAGGGAACAAACGGTGCTGACATGGCAGACATTTATTTCAATGGAGAAGTTCTTCTCTGTCCTCTCATaGACTGAACCACTTTCAGTG +
Preference number: 2 (lower is better)
Translates to: LREQTVLTWQTFISMEKFFSVLS*TEPLSV
Trigger: CACTGAAAGTGGTTCAGTTCATGAGAGGACAGAGAA...GAACTTCTCCATTGAAATAAATGTCTGCCATGTCAGCACCGTTTGTTCCCTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR GCA 90 bp CTGAGGGAACAAACGGTGCTGACATGGCAGACATTTATTTCAATGGAGAAGTTCACCATTCCCTTGGCATaGTTTAGAGAGAGACACACA +
Preference number: 2 (lower is better)
Translates to: LREQTVLTWQTFISMEKFTIPLA*FRERHT
Trigger: TGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGT...GAACTTCTCCATTGAAATAAATGTCTGCCATGTCAGCACCGTTTGTTCCCTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR GCA 90 bp GACACTTGGGGGTTGATACAACAGGCACATGAGCCCTTAAAACTCCTTCCTGTTGATTTACTCAACACATaGTGCTCATTTTCACAGTGG +
Preference number: 2 (lower is better)
Translates to: DTWGLIQQAHEPLKLLPVDLLNT*CSFSQW
Trigger: CCACTGTGAAAATGAGCAGCATGTGTTGAGTAAATC...AACAGGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATCAACCCCCAAGTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CCA 90 bp GTAAAGCCCTGGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATTCAGATGTCCTTAGTGTaGTGTAGTCTTTACACAGCA +
Preference number: 2 (lower is better)
Translates to: VKPWIVLILQEAPWVKVIQMSLV*CSLYTA
Trigger: TGCTGTGTAAAGACTACACCACACTAAGGACATCTG...AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CCA 90 bp GACACTTGGGGGTTGATACAACAGGCACATGAGCCCTTAAAACTCCTTCCTGTTACAAAACGGAAAAAGTaGGGCTCTATGTCTTTCTAC +
Preference number: 2 (lower is better)
Translates to: DTWGLIQQAHEPLKLLPVTKRKK*GSMSFY
Trigger: GTAGAAAGACATAGAGCCCCACTTTTTCCGTTTTGT...AACAGGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATCAACCCCCAAGTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR TCA 90 bp GTAAAGCCCTGGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATTACACACTTAAGTGTGTaGCTGCCTCTTCAATTTTTG +
Preference number: 2 (lower is better)
Translates to: VKPWIVLILQEAPWVKVITHLSV*LPLQFL
Trigger: CAAAAATTGAAGAGGCAGTCACACACTTAAGTGTGT...AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR GCA 90 bp GACACTTGGGGGTTGATACAACAGGCACATGAGCCCTTAAAACTCCTTCCTGTTGAGAGAAAACCCATCTaGTTTTCTATAAGCCTTAGT +
Preference number: 2 (lower is better)
Translates to: DTWGLIQQAHEPLKLLPVERKPI*FSISLS
Trigger: ACTAAGGCTTATAGAAAAGCAGATGGGTTTTCTCTC...AACAGGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATCAACCCCCAAGTGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CAA 90 bp TTCTCTCCTAGGTCACCTCGTCCACGTCATAATTCCTTATGCTGTTaGCTTACCCCATCGATAGTAGGCACTTTCATTTACAGTGATATT +
Preference number: 2 (lower is better)
Translates to: FSPRSPRPRHNSLCC*LTPSIVGTFIYSDI
Trigger: AATATCACTGTAAATGAAAGTGCCTACTATCGATGGGGTAAGCAAACAGCATAAGGAATTATGACGTGGACGAGGTGACCTAGGAGAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR TCA 90 bp TTTTGGTTGGCGACATTTGAACAGCATAGCTACATGCAAATGAGAATAGTTTACGAGAAGTTCCTCCCATaGAACCAAGACCTTGTCCTC +
Preference number: 2 (lower is better)
Translates to: FWLATFEQHSYMQMRIVYEKFLP*NQDLVL
Trigger: GAGGACAAGGTCTTGGTTTCATGGGAGGAACTTCTC...GTAAACTATTCTCATTTGCATGTAGCTATGCTGTTCAAATGTCGCCAACCAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR GCA 90 bp GACACTTGGGGGTTGATACAACAGGCACATGAGCCCTTAAAACTCCTTCCTGTTCCTTTGCTCAACAATTaGACAGAGCATAATTACAAT +
Preference number: 2 (lower is better)
Translates to: DTWGLIQQAHEPLKLLPVPLLNN*TEHNYN
Trigger: ATTGTAATTATGCTCTGTGCAATTGTTGAGCAAAGG...AACAGGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATCAACCCCCAAGTGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CCA 90 bp CAAACAAGACTTTTTATCCAGCAAGGCAAAACCTTTGCTCAACAATTGCACAGAGTGAGGGAGGAAAGGTaGGTGAAAAGGGAGTATCTA +
Preference number: 2 (lower is better)
Translates to: QTRLFIQQGKTFAQQLHRVREER*VKREYL
Trigger: TAGATACTCCCTTTTCACCCACCTTTCCTCCCTCAC...TCTGTGCAATTGTTGAGCAAAGGTTTTGCCTTGCTGGATAAAAAGTCTTGTTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CCA 90 bp AATATGGCTCACCTTCCCTATATTTTACTAGCTACCTTCTTGGATGAGAATTTGCTGGGAGTTGACACTTaGAGACCTTCCTGTTTCTGG +
Preference number: 2 (lower is better)
Translates to: NMAHLPYILLATFLDENLLGVDT*RPSCFW
Trigger: CCAGAAACAGGAAGGTCTCCAAGTGTCAACTCCCAG...CAAATTCTCATCCAAGAAGGTAGCTAGTAAAATATAGGGAAGGTGAGCCATATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CCA 90 bp GACACTTGGGGGTTGATACAACAGGCACATGAGCCCTTAAAACTCCTTCCTGTTTTCTTTCCTAAATTTTaGTTGGCGACATTTGAACAG +
Preference number: 2 (lower is better)
Translates to: DTWGLIQQAHEPLKLLPVFFPKF*LATFEQ
Trigger: CTGTTCAAATGTCGCCAACCAAAATTTAGGAAAGAA...AACAGGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATCAACCCCCAAGTGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR TCA 90 bp CTGAGGGAACAAACGGTGCTGACATGGCAGACATTTATTTCAATGGAGAAGTTCGATACCCTTTATTCTTaGACTAAGAAGACCAAACTG +
Preference number: 2 (lower is better)
Translates to: LREQTVLTWQTFISMEKFDTLYS*TKKTKL
Trigger: CAGTTTGGTCTTCTTAGTTCAAGAATAAAGGGTATC...GAACTTCTCCATTGAAATAAATGTCTGCCATGTCAGCACCGTTTGTTCCCTCAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CCA 90 bp TGCGGGGTTTCAAACTTTGATTACCAAGGGACAAGATTCTTGAAGGAATTTATTGAGTCTATGTACACATaGACCATTCCCTTGGCATGC +
Preference number: 2 (lower is better)
Translates to: CGVSNFDYQGTRFLKEFIESMYT*TIPLAC
Trigger: GCATGCCAAGGGAATGGTCCATGTGTACATAGACTC...AATAAATTCCTTCAAGAATCTTGTCCCTTGGTAATCAAAGTTTGAAACCCCGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CCA 90 bp TATATTGCACAATTTCTTAGAATCCAGATGGCAAGCTTTCCCACTGCTTTTGTTCTTGAACTGTTCCTGTaGGTCTGCTTCCTTTGGCTA +
Preference number: 2 (lower is better)
Translates to: YIAQFLRIQMASFPTAFVLELFL*VCFLWL
Trigger: TAGCCAAAGGAAGCAGACCCACAGGAACAGTTCAAG...AACAAAAGCAGTGGGAAAGCTTGCCATCTGGATTCTAAGAAATTGTGCAATATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CAA 90 bp GCCAACCATGATGGAAAATTTACATCACTGAGGCAAATGCAGTCTTaGGAGAAGAAATATTCTAAACATTTAAGCAAGGAGGAGGCTTCC +
Preference number: 2 (lower is better)
Translates to: ANHDGKFTSLRQMQS*EKKYSKHLSKEEAS
Trigger: GGAAGCCTCCTCCTTGCTTAAATGTTTAGAATATTTCTTCTCCAAAGACTGCATTTGCCTCAGTGATGTAAATTTTCCATCATGGTTGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR TCA 90 bp AATATGGCTCACCTTCCCTATATTTTACTAGCTACCTTCTTGGATGAGAATTTGGAGCATAGCTTGGTTTaGATACACACTGATGCCATG +
Preference number: 2 (lower is better)
Translates to: NMAHLPYILLATFLDENLEHSLV*IHTDAM
Trigger: CATGGCATCAGTGTGTATTCAAACCAAGCTATGCTC...CAAATTCTCATCCAAGAAGGTAGCTAGTAAAATATAGGGAAGGTGAGCCATATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR TCA 90 bp TTTTGGTTGGCGACATTTGAACAGCATAGCTACATGCAAATGAGAATAGTTTACTTCTCTGTCCTCTCATaGACTGAACCACTTTCAGTG +
Preference number: 2 (lower is better)
Translates to: FWLATFEQHSYMQMRIVYFSVLS*TEPLSV
Trigger: CACTGAAAGTGGTTCAGTTCATGAGAGGACAGAGAA...GTAAACTATTCTCATTTGCATGTAGCTATGCTGTTCAAATGTCGCCAACCAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR TCA 90 bp CAAACAAGACTTTTTATCCAGCAAGGCAAAACCTTTGCTCAACAATTGCACAGACGGGGTTTCAAACTTTaGTTACCAAGGGACAAGATT +
Preference number: 2 (lower is better)
Translates to: QTRLFIQQGKTFAQQLHRRGFKL*LPRDKI
Trigger: AATCTTGTCCCTTGGTAATCAAAGTTTGAAACCCCG...TCTGTGCAATTGTTGAGCAAAGGTTTTGCCTTGCTGGATAAAAAGTCTTGTTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR GCA 90 bp TTTTGGTTGGCGACATTTGAACAGCATAGCTACATGCAAATGAGAATAGTTTACGCAAGGCAAAACCTTTaGTCAACAATTGCACAGAGC +
Preference number: 2 (lower is better)
Translates to: FWLATFEQHSYMQMRIVYARQNL*STIAQS
Trigger: GCTCTGTGCAATTGTTGAGCAAAGGTTTTGCCTTGC...GTAAACTATTCTCATTTGCATGTAGCTATGCTGTTCAAATGTCGCCAACCAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CAA 90 bp CAAGCAAAGAGTTTCCAAAGACACACATTTACTGTAATGAGGTACTaGGCCCAGGATGACAGAAAACTAATGTTTCCTTTCTTATGCACA +
Preference number: 2 (lower is better)
Translates to: QAKSFQRHTFTVMRY*AQDDRKLMFPFLCT
Trigger: TGTGCATAAGAAAGGAAACATTAGTTTTCTGTCATCCTGGGCCAAGTACCTCATTACAGTAAATGTGTGTCTTTGGAAACTCTTTGCTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR TCA 90 bp TTTTGGTTGGCGACATTTGAACAGCATAGCTACATGCAAATGAGAATAGTTTACATTCCATTGATAGTCTaGAGTGGCTACAAGTCAGCT +
Preference number: 2 (lower is better)
Translates to: FWLATFEQHSYMQMRIVYIPLIV*SGYKSA
Trigger: AGCTGACTTGTAGCCACTTCAGACTATCAATGGAAT...GTAAACTATTCTCATTTGCATGTAGCTATGCTGTTCAAATGTCGCCAACCAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR TCA 90 bp TATATTGCACAATTTCTTAGAATCCAGATGGCAAGCTTTCCCACTGCTTTTGTTTGCAAACACCATCAGTaGAACAGAACAGGGATTATG +
Preference number: 2 (lower is better)
Translates to: YIAQFLRIQMASFPTAFVCKHHQ*NRTGIM
Trigger: CATAATCCCTGTTCTGTTTCACTGATGGTGTTTGCA...AACAAAAGCAGTGGGAAAGCTTGCCATCTGGATTCTAAGAAATTGTGCAATATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR GCA 90 bp TGCGGGGTTTCAAACTTTGATTACCAAGGGACAAGATTCTTGAAGGAATTTATTATAGGAAACAATCTCTaGTCAGGGGAATTCATGGGA +
Preference number: 2 (lower is better)
Translates to: CGVSNFDYQGTRFLKEFIIGNNL*SGEFMG
Trigger: TCCCATGAATTCCCCTGAGCAGAGATTGTTTCCTAT...AATAAATTCCTTCAAGAATCTTGTCCCTTGGTAATCAAAGTTTGAAACCCCGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR GCA 90 bp CAAACAAGACTTTTTATCCAGCAAGGCAAAACCTTTGCTCAACAATTGCACAGATCTGTTGACTTTTTCTaGCTTGCTCACTTTCACTGT +
Preference number: 2 (lower is better)
Translates to: QTRLFIQQGKTFAQQLHRSVDFF*LAHFHC
Trigger: ACAGTGAAAGTGAGCAAGGCAGAAAAAGTCAACAGA...TCTGTGCAATTGTTGAGCAAAGGTTTTGCCTTGCTGGATAAAAAGTCTTGTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CCA 90 bp AATATGGCTCACCTTCCCTATATTTTACTAGCTACCTTCTTGGATGAGAATTTGGGAAGGAGCATAGCTTaGTTTGAATACACACTGATG +
Preference number: 2 (lower is better)
Translates to: NMAHLPYILLATFLDENLGRSIA*FEYTLM
Trigger: CATCAGTGTGTATTCAAACCAAGCTATGCTCCTTCC...CAAATTCTCATCCAAGAAGGTAGCTAGTAAAATATAGGGAAGGTGAGCCATATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CCA 90 bp TGCGGGGTTTCAAACTTTGATTACCAAGGGACAAGATTCTTGAAGGAATTTATTAATACAGTAGGAGCCTaGGCATCTGTTGACTTTTTC +
Preference number: 2 (lower is better)
Translates to: CGVSNFDYQGTRFLKEFINTVGA*ASVDFF
Trigger: GAAAAAGTCAACAGATGCCCAGGCTCCTACTGTATT...AATAAATTCCTTCAAGAATCTTGTCCCTTGGTAATCAAAGTTTGAAACCCCGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR TCA 90 bp ATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACATTTGCTTAGTAGATATAAAACACACAAAGTTGTaGAATAAACGGTCTCCCCCA +
Preference number: 2 (lower is better)
Translates to: MSLVWCSLYTAYICLVDIKHTKL*NKRSPP
Trigger: TGGGGGAGACCGTTTATTTCACAACTTTGTGTGTTT...TATATCTACTAAGCAAATGTATGCTGTGTAAAGACTACACCACACTAAGGACAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR TCA 90 bp CAAACAAGACTTTTTATCCAGCAAGGCAAAACCTTTGCTCAACAATTGCACAGAACACTTTCAATCCTATaGAATTTCTGGGGACAATGT +
Preference number: 2 (lower is better)
Translates to: QTRLFIQQGKTFAQQLHRTLSIL*NFWGQC
Trigger: ACATTGTCCCCAGAAATTTCATAGGATTGAAAGTGT...TCTGTGCAATTGTTGAGCAAAGGTTTTGCCTTGCTGGATAAAAAGTCTTGTTTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR GCA 90 bp GTGACTGCCTCTTCAATTTTTGGGGAATGCTTATTATTAAAGATGATACCCTTTATAGGAAACAATCTCTaGTCAGGGGAATTCATGGGA +
Preference number: 2 (lower is better)
Translates to: VTASSIFGECLLLKMIPFIGNNL*SGEFMG
Trigger: TCCCATGAATTCCCCTGAGCAGAGATTGTTTCCTAT...AAAGGGTATCATCTTTAATAATAAGCATTCCCCAAAAATTGAAGAGGCAGTCAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CCA 90 bp TGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAAAACAGATGTCCTTAGTGTaGTGTAGTCTTTACACAGCA +
Preference number: 2 (lower is better)
Translates to: WKYKHQRQDLIFFPTDEKQMSLV*CSLYTA
Trigger: TGCTGTGTAAAGACTACACCACACTAAGGACATCTG...TTTTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CCA 90 bp TGCGGGGTTTCAAACTTTGATTACCAAGGGACAAGATTCTTGAAGGAATTTATTATTAACCTAGAACACTaGGAAAAACATCTGCAGAGG +
Preference number: 2 (lower is better)
Translates to: CGVSNFDYQGTRFLKEFIINLEH*EKHLQR
Trigger: CCTCTGCAGATGTTTTTCCCAGTGTTCTAGGTTAAT...AATAAATTCCTTCAAGAATCTTGTCCCTTGGTAATCAAAGTTTGAAACCCCGCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CCA 90 bp TATATTGCACAATTTCTTAGAATCCAGATGGCAAGCTTTCCCACTGCTTTTGTTTGCTGCATAGGAATATaGCTCACCTTCCCTATATTT +
Preference number: 2 (lower is better)
Translates to: YIAQFLRIQMASFPTAFVCCIGI*LTFPIF
Trigger: AAATATAGGGAAGGTGAGCCATATTCCTATGCAGCA...AACAAAAGCAGTGGGAAAGCTTGCCATCTGGATTCTAAGAAATTGTGCAATATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CAA 90 bp ATGTCTCGAAACAAACAAGACTTTTTATCCAGCAAGGCAAAACCTTaGCTCAACAATTGCACAGAGCATAATTACAATTCTGCAGTTGTA +
Preference number: 2 (lower is better)
Translates to: MSRNKQDFLSSKAKP*LNNCTEHNYNSAVV
Trigger: TACAACTGCAGAATTGTAATTATGCTCTGTGCAATTGTTGAGCAAAGGTTTTGCCTTGCTGGATAAAAAGTCTTGTTTGTTTCGAGACAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CAA 90 bp GAGATGTACATGCTGGGTGAAAACAAATTCTTTCCTAAATTTTGGTaGGCGACATTTGAACAGCATAGCTACATGCAAATGAGAATAGTT +
Preference number: 2 (lower is better)
Translates to: EMYMLGENKFFPKFW*ATFEQHSYMQMRIV
Trigger: AACTATTCTCATTTGCATGTAGCTATGCTGTTCAAATGTCGCCAACCAAAATTTAGGAAAGAATTTGTTTTCACCCAGCATGTACATCTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR TCA 90 bp GTGACTGCCTCTTCAATTTTTGGGGAATGCTTATTATTAAAGATGATACCCTTTCAAGGGTTGGTTTTCTaGCAAAGACATCTATATGCA +
Preference number: 2 (lower is better)
Translates to: VTASSIFGECLLLKMIPFQGLVF*QRHLYA
Trigger: TGCATATAGATGTCTTTGTCAGAAAACCAACCCTTG...AAAGGGTATCATCTTTAATAATAAGCATTCCCCAAAAATTGAAGAGGCAGTCAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CCA 90 bp TATATTGCACAATTTCTTAGAATCCAGATGGCAAGCTTTCCCACTGCTTTTGTTATTGATAGTCTGAAGTaGCTACAAGTCAGCTCAAAT +
Preference number: 2 (lower is better)
Translates to: YIAQFLRIQMASFPTAFVIDSLK*LQVSSN
Trigger: ATTTGAGCTGACTTGTAGCCACTTCAGACTATCAAT...AACAAAAGCAGTGGGAAAGCTTGCCATCTGGATTCTAAGAAATTGTGCAATATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CCA 90 bp GTGACTGCCTCTTCAATTTTTGGGGAATGCTTATTATTAAAGATGATACCCTTTCTTAGGATCTCCAAGTaGTTCATCATTCTTTCACTG +
Preference number: 2 (lower is better)
Translates to: VTASSIFGECLLLKMIPFLRISK*FIILSL
Trigger: CAGTGAAAGAATGATGAACCACTTGGAGATCCTAAG...AAAGGGTATCATCTTTAATAATAAGCATTCCCCAAAAATTGAAGAGGCAGTCAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR GCA 90 bp TTTTGGTTGGCGACATTTGAACAGCATAGCTACATGCAAATGAGAATAGTTTACCCTTTGCTCAACAATTaGACAGAGCATAATTACAAT +
Preference number: 2 (lower is better)
Translates to: FWLATFEQHSYMQMRIVYPLLNN*TEHNYN
Trigger: ATTGTAATTATGCTCTGTGCAATTGTTGAGCAAAGG...GTAAACTATTCTCATTTGCATGTAGCTATGCTGTTCAAATGTCGCCAACCAAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CCA 90 bp TTTTGGTTGGCGACATTTGAACAGCATAGCTACATGCAAATGAGAATAGTTTACATGACATACCATATTTaGCTCTGCAAGATTACATTC +
Preference number: 2 (lower is better)
Translates to: FWLATFEQHSYMQMRIVYMTYHI*LCKITF
Trigger: GAATGTAATCTTGCAGAGCCAAATATGGTATGTCAT...GTAAACTATTCTCATTTGCATGTAGCTATGCTGTTCAAATGTCGCCAACCAAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR GCA 72 bp TGTGACAGCCATGGATGTAGGGAGGACTCTGCTCCTTaGCTCTTTCCCCGCCATCTCCCCCAGCAACTTGTT +
Preference number: 3 (lower is better)
Translates to: CDSHGCREDSAP*LFPRHLPQQLV
Trigger: AACAAGTTGCTGGGGGAGATGGCGGGGAAAGAGGCAAGGAGCAGAGTCCTCCCTACATCCATGGCTGTCACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CAA 90 bp GACACTTGGGGGTTGATACAACAGGCACATGAGCCCTTAAAACTCCTTCCTGTTGGAGGACTCTGCTCCTaGCCTCTTTCCCCGCCATCT +
Preference number: 3 (lower is better)
Translates to: DTWGLIQQAHEPLKLLPVGGLCS*PLSPPS
Trigger: AGATGGCGGGGAAAGAGGCAAGGAGCAGAGTCCTCC...AACAGGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATCAACCCCCAAGTGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CAA 90 bp GAAACCACAACCAACTCAGGGATGGAATCTGCGACTCTGGAGGATTCAAGAAGCGTGAGAGCGAAAGACTaGAGCACACACGCACAGTGG +
Preference number: 3 (lower is better)
Translates to: ETTTNSGMESATLEDSRSVRAKD*STHAQW
Trigger: CCACTGTGCGTGTGTGCTCAAGTCTTTCGCTCTCAC...GCTTCTTGAATCCTCCAGAGTCGCAGATTCCATCCCTGAGTTGGTTGTGGTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR GCA 72 bp GGAGACCTTCCTGTTTCTGGGGATTTACTCAACACATaGTGCTCATTTTCACAGTGGAGCAGGGCCTACCCT +
Preference number: 3 (lower is better)
Translates to: GDLPVSGDLLNT*CSFSQWSRAYP
Trigger: AGGGTAGGCCCTGCTCCACTGTGAAAATGAGCAGCATGTGTTGAGTAAATCCCCAGAAACAGGAAGGTCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CCA 72 bp TTGCCCATTTCTTACAGTTCAGCCTTTGAACCTGCCTaGGACCCCATGCTTACCGCCATCAGCACAAGCAAA +
Preference number: 3 (lower is better)
Translates to: LPISYSSAFEPA*DPMLTAISTSK
Trigger: TTTGCTTGTGCTGATGGCGGTAAGCATGGGGTCCCAGGCAGGTTCAAAGGCTGAACTGTAAGAAATGGGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CAA 90 bp GTAAAGCCCTGGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATTGTGAGAGCGAAAGACTaGAGCACACACGCACAGTGG +
Preference number: 3 (lower is better)
Translates to: VKPWIVLILQEAPWVKVIVRAKD*STHAQW
Trigger: CCACTGTGCGTGTGTGCTCAAGTCTTTCGCTCTCAC...AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CAA 90 bp TGCTGCTCATTTTCACAGTGGAGCAGGGCCTACCCTGTTAAATGCCAGGAAATAATCTCCCCCAGCAACTaGTTACAGCCGCATCTCACA +
Preference number: 3 (lower is better)
Translates to: CCSFSQWSRAYPVKCQEIISPSN*LQPHLT
Trigger: TGTGAGATGCGGCTGTAACAAGTTGCTGGGGGAGAT...TATTTCCTGGCATTTAACAGGGTAGGCCCTGCTCCACTGTGAAAATGAGCAGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CAA 90 bp GACACTTGGGGGTTGATACAACAGGCACATGAGCCCTTAAAACTCCTTCCTGTTGAGCCTGGGCATCTGTaGACTTTTTCTGCCTTGCTC +
Preference number: 3 (lower is better)
Translates to: DTWGLIQQAHEPLKLLPVEPGHL*TFSALL
Trigger: GAGCAAGGCAGAAAAAGTCAACAGATGCCCAGGCTC...AACAGGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATCAACCCCCAAGTGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR TCA 72 bp ATGTATTGTCTTGCCCATTTCTTACAGTTCAGCCTTTaGACCTGCCTGGGACCCCATGCTTACCGCCATCAG +
Preference number: 3 (lower is better)
Translates to: MYCLAHFLQFSL*TCLGPHAYRHQ
Trigger: CTGATGGCGGTAAGCATGGGGTCCCAGGCAGGTTCAAAGGCTGAACTGTAAGAAATGGGCAAGACAATACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR GCA 72 bp GACCTTCCTGTTTCTGGGGATTTACTCAACACATGCTaGTCATTTTCACAGTGGAGCAGGGCCTACCCTGTT +
Preference number: 3 (lower is better)
Translates to: DLPVSGDLLNTC*SFSQWSRAYPV
Trigger: AACAGGGTAGGCCCTGCTCCACTGTGAAAATGAGCAGCATGTGTTGAGTAAATCCCCAGAAACAGGAAGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CAA 90 bp TATATTGCACAATTTCTTAGAATCCAGATGGCAAGCTTTCCCACTGCTTTTGTTGGAGGACTCTGCTCCTaGCCTCTTTCCCCGCCATCT +
Preference number: 3 (lower is better)
Translates to: YIAQFLRIQMASFPTAFVGGLCS*PLSPPS
Trigger: AGATGGCGGGGAAAGAGGCAAGGAGCAGAGTCCTCC...AACAAAAGCAGTGGGAAAGCTTGCCATCTGGATTCTAAGAAATTGTGCAATATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR TCA 72 bp GCTTTTCATTATGGCCAGTGCTCTGTATTAGAGCTCTaGCAGTATCTCCAGAATACAGTAGGAGCCTGGGCA +
Preference number: 3 (lower is better)
Translates to: AFHYGQCSVLEL*QYLQNTVGAWA
Trigger: TGCCCAGGCTCCTACTGTATTCTGGAGATACTGTCAGAGCTCTAATACAGAGCACTGGCCATAATGAAAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR GCA 72 bp TCTCCTAGGTCACCTCGTCCACGTCATAATTCCTTATaGTGTTTGCTTACCCCATCGATAGTAGGCACTTTC +
Preference number: 3 (lower is better)
Translates to: SPRSPRPRHNSL*CLLTPSIVGTF
Trigger: GAAAGTGCCTACTATCGATGGGGTAAGCAAACAGCATAAGGAATTATGACGTGGACGAGGTGACCTAGGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CCA 72 bp GCAGGGAAGATGAATATCATGCAATTCTTAGCACCCTaGCATAGGATAACAGTGGACCACCATGAACAGTGG +
Preference number: 3 (lower is better)
Translates to: AGKMNIMQFLAP*HRITVDHHEQW
Trigger: CCACTGTTCATGGTGGTCCACTGTTATCCTATGCCAGGGTGCTAAGAATTGCATGATATTCATCTTCCCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR TCA 72 bp GATCTCCAAGTGGTTCATCATTCTTTCACTGGGAGTTaGCACTTGGAGACCTTCCTGTTTCTGGGGATTTAC +
Preference number: 3 (lower is better)
Translates to: DLQVVHHSFTGS*HLETFLFLGIY
Trigger: GTAAATCCCCAGAAACAGGAAGGTCTCCAAGTGTCAACTCCCAGTGAAAGAATGATGAACCACTTGGAGATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR GCA 72 bp AATGAGTCTATGTACACATGGACCATTCCCTTGGCATaGTTTAGAGAGAGACACACACACGCTCACACACAT +
Preference number: 3 (lower is better)
Translates to: NESMYTWTIPLA*FRERHTHAHTH
Trigger: ATGTGTGTGAGCGTGTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACATAGACTCATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR GCA 72 bp AGAGCAAGGGTTGGTTTTCTGACAAAGACATCTATATaGAGAGAGCCAGCTCTCTCGGCAAGACATTTCCTA +
Preference number: 3 (lower is better)
Translates to: RARVGFLTKTSI*REPALSARHFL
Trigger: TAGGAAATGTCTTGCCGAGAGAGCTGGCTCTCTGCATATAGATGTCTTTGTCAGAAAACCAACCCTTGCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CCA 72 bp GGATTGCTGCAGCGTGCCATGAAGCTAGGACTTCCATaGGTTTTCTTCACTTGCAAGAAGCATATTTGTACT +
Preference number: 3 (lower is better)
Translates to: GLLQRAMKLGLP*VFFTCKKHICT
Trigger: AGTACAAATATGCTTCTTGCAAGTGAAGAAAACCCATGGAAGTCCTAGCTTCATGGCACGCTGCAGCAATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CCA 72 bp ACAGAGCATAATTACAATTCTGCAGTTGTAAAGCCCTaGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTC +
Preference number: 3 (lower is better)
Translates to: TEHNYNSAVVKP*IVLILQEAPWV
Trigger: GACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTACAACTGCAGAATTGTAATTATGCTCTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR GCA 72 bp GAGAATACAGAGACCAAACTAGAGATAACAAACAGCTaGTGTTTACAAACAGTGCTGGGCACAGCACTAAGT +
Preference number: 3 (lower is better)
Translates to: ENTETKLEITNS*CLQTVLGTALS
Trigger: ACTTAGTGCTGTGCCCAGCACTGTTTGTAAACAGCAGCTGTTTGTTATCTCTAGTTTGGTCTCTGTATTCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CCA 72 bp TTCAGTGCTTACTACTGTGTAAGTGAGAGCAAGGGTTaGTTTTCTGACAAAGACATCTATATGCAGAGAGCC +
Preference number: 3 (lower is better)
Translates to: FSAYYCVSESKG*FSDKDIYMQRA
Trigger: GGCTCTCTGCATATAGATGTCTTTGTCAGAAAACCAACCCTTGCTCTCACTTACACAGTAGTAAGCACTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CAA 90 bp GTGACTGCCTCTTCAATTTTTGGGGAATGCTTATTATTAAAGATGATACCCTTTGAGCCTGGGCATCTGTaGACTTTTTCTGCCTTGCTC +
Preference number: 3 (lower is better)
Translates to: VTASSIFGECLLLKMIPFEPGHL*TFSALL
Trigger: GAGCAAGGCAGAAAAAGTCAACAGATGCCCAGGCTC...AAAGGGTATCATCTTTAATAATAAGCATTCCCCAAAAATTGAAGAGGCAGTCAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR TCA 72 bp CTTATTTCCCCCTTCATGTATAAACACACAAAGTTGTaGAATAAACGGTCTCCCCCATCTCTCTCTCTCTCT +
Preference number: 3 (lower is better)
Translates to: LISPFMYKHTKL*NKRSPPSLSLS
Trigger: AGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACAACTTTGTGTGTTTATACATGAAGGGGGAAATAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
3UTR TCA 72 bp TGGCAGACATTTATTTCAATGGAGAAGTTCCTCCCATaGAACCAAGACCTTGTCCTCATGATAAAGTGGAGA +
Preference number: 3 (lower is better)
Translates to: WQTFISMEKFLP*NQDLVLMIKWR
Trigger: TCTCCACTTTATCATGAGGACAAGGTCTTGGTTTCATGGGAGGAACTTCTCCATTGAAATAAATGTCTGCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CCA 72 bp TTTCTTCACTTGCAAGAAGCATATTTGTACTGTGCCTaGCTTTACATAGGGAGGATTGTGCAGAGTAGAATG +
Preference number: 3 (lower is better)
Translates to: FLHLQEAYLYCA*LYIGRIVQSRM
Trigger: CATTCTACTCTGCACAATCCTCCCTATGTAAAGCCAGGCACAGTACAAATATGCTTCTTGCAAGTGAAGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR TCA 72 bp AAGCACATCATATATCCTTACCTACACAAAGTGATGTaGTTGCTGGGAAGTGATGAACAAACCCTACTCTTC +
Preference number: 3 (lower is better)
Translates to: KHIIYPYLHKVM*LLGSDEQTLLF
Trigger: GAAGAGTAGGGTTTGTTCATCACTTCCCAGCAATCACATCACTTTGTGTAGGTAAGGATATATGATGTGCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR GCA 72 bp ATGTTATTTAAGATTAGGGAGGAGGTAAAACAGGGCTaGTTAGGATCTCCAAGTGGTTCATCATTCTTTCAC +
Preference number: 3 (lower is better)
Translates to: MLFKIREEVKQG*LGSPSGSSFFH
Trigger: GTGAAAGAATGATGAACCACTTGGAGATCCTAAGCAGCCCTGTTTTACCTCCTCCCTAATCTTAAATAACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR GCA 72 bp TCAGTATATTATTTCCAACCAGTTGGTGCTTTTCAGTaGGGGGTTTCAAACTTTGATTACCAAGGGACAAGA +
Preference number: 3 (lower is better)
Translates to: SVYYFQPVGAFQ*GVSNFDYQGTR
Trigger: TCTTGTCCCTTGGTAATCAAAGTTTGAAACCCCGCACTGAAAAGCACCAACTGGTTGGAAATAATATACTGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR-3UTR CAA 90 bp GTGACTGCCTCTTCAATTTTTGGGGAATGCTTATTATTAAAGATGATACCCTTTAGTTGCCCAGCAATTTaGGTTAAGGACCTAGATCAC +
Preference number: 3 (lower is better)
Translates to: VTASSIFGECLLLKMIPFSCPAI*VKDLDH
Trigger: GTGATCTAGGTCCTTAACCAAAATTGCTGGGCAACT...AAAGGGTATCATCTTTAATAATAAGCATTCCCCAAAAATTGAAGAGGCAGTCAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR TCA 72 bp AATCTAAGCACATCATATATCCTTACCTACACAAAGTaGTGTGATTGCTGGGAAGTGATGAACAAACCCTAC +
Preference number: 3 (lower is better)
Translates to: NLSTSYILTYTK*CDCWEVMNKPY
Trigger: GTAGGGTTTGTTCATCACTTCCCAGCAATCACATCACTTTGTGTAGGTAAGGATATATGATGTGCTTAGATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CCA 72 bp ATTATATTAAAACTGAGGGAACAAACGGTGCTGACATaGCAGACATTTATTTCAATGGAGAAGTTCCTCCCA +
Preference number: 3 (lower is better)
Translates to: IILKLREQTVLT*QTFISMEKFLP
Trigger: TGGGAGGAACTTCTCCATTGAAATAAATGTCTGCCATGTCAGCACCGTTTGTTCCCTCAGTTTTAATATAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR TCA 72 bp AGGAGAAACAGATTTTTGTTTGGTCCTCCAAGAACGTaGAAATCACGAGTACTTTTACAAGGTCTCTATAAG +
Preference number: 3 (lower is better)
Translates to: RRNRFLFGPPRT*KSRVLLQGLYK
Trigger: CTTATAGAGACCTTGTAAAAGTACTCGTGATTTTCACGTTCTTGGAGGACCAAACAAAAATCTGTTTCTCCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR TCA 72 bp GCTTACCCTTTTCTCAGAGAACCTAACTTTCACATTTaGTTTTGGCCTTCACAACAATTCATACTGTCTTCA +
Preference number: 3 (lower is better)
Translates to: AYPFLREPNFHI*FWPSQQFILSS
Trigger: TGAAGACAGTATGAATTGTTGTGAAGGCCAAAATCAAATGTGAAAGTTAGGTTCTCTGAGAAAAGGGTAAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR TCA 72 bp CATTTAGTGAGATGTTTACAGATATTATGCCAACCATaGTGGAAAATTTACATCACTGAGGCAAATGCAGTC +
Preference number: 3 (lower is better)
Translates to: HLVRCLQILCQP*WKIYITEANAV
Trigger: GACTGCATTTGCCTCAGTGATGTAAATTTTCCATCATGGTTGGCATAATATCTGTAAACATCTCACTAAATG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR GCA 72 bp TTTTTATCCAGCAAGGCAAAACCTTTGCTCAACAATTaGACAGAGCATAATTACAATTCTGCAGTTGTAAAG +
Preference number: 3 (lower is better)
Translates to: FLSSKAKPLLNN*TEHNYNSAVVK
Trigger: CTTTACAACTGCAGAATTGTAATTATGCTCTGTGCAATTGTTGAGCAAAGGTTTTGCCTTGCTGGATAAAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR GCA 72 bp ACAAACAAGACTTTTTATCCAGCAAGGCAAAACCTTTaGTCAACAATTGCACAGAGCATAATTACAATTCTG +
Preference number: 3 (lower is better)
Translates to: TNKTFYPARQNL*STIAQSIITIL
Trigger: CAGAATTGTAATTATGCTCTGTGCAATTGTTGAGCAAAGGTTTTGCCTTGCTGGATAAAAAGTCTTGTTTGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR GCA 72 bp GATAACTCCCAATTAAAAATGATTCAGTCCCTCACTTaGAATATTCAGGATAAATGTGTGGAAACATTAGGC +
Preference number: 3 (lower is better)
Translates to: DNSQLKMIQSLT*NIQDKCVETLG
Trigger: GCCTAATGTTTCCACACATTTATCCTGAATATTGCAAGTGAGGGACTGAATCATTTTTAATTGGGAGTTATC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp TGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACACGCTCGTGGCCACGCCGAGGTaGGGGTCCGCGGGGTGCTCT +
Preference number: 4 (lower is better)
Translates to: CTHGPFPWHALERDTHTLVATPR*GSAGCS
Trigger: AGAGCACCCCGCGGACCCGCACCTCGGCGTGGCCAC...GAGCGTGTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000490035.7
CDS-3UTR GCA 90 bp GTAAAGCCCTGGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATTTGCGGGTCCGCGGGGTaGTCTGGAGGGGTGCGCGCT +
Preference number: 4 (lower is better)
Translates to: VKPWIVLILQEAPWVKVICGSAG*SGGVRA
Trigger: AGCGCGCACCCCTCCAGAGCACCCCGCGGACCCGCA...AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000490035.7
CDS-3UTR CCA 90 bp TGCCTCTTTCCCCGCCATCTCCCCCAGCAACTTGTTACAGCCGCATCTCACAATGCCTTTGAACCTGCCTaGGACCCCATGCTTACCGCC +
Preference number: 4 (lower is better)
Translates to: CLFPRHLPQQLVTAASHNAFEPA*DPMLTA
Trigger: GGCGGTAAGCATGGGGTCCCAGGCAGGTTCAAAGGC...ATTGTGAGATGCGGCTGTAACAAGTTGCTGGGGGAGATGGCGGGGAAAGAGGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TGCCTCTTTCCCCGCCATCTCCCCCAGCAACTTGTTACAGCCGCATCTCACAATCTCCAGCTCAACCCGTaGGTCCAGAGACCACTTGTC +
Preference number: 4 (lower is better)
Translates to: CLFPRHLPQQLVTAASHNLQLNP*VQRPLV
Trigger: GACAAGTGGTCTCTGGACCCACGGGTTGAGCTGGAG...ATTGTGAGATGCGGCTGTAACAAGTTGCTGGGGGAGATGGCGGGGAAAGAGGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp CTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATCCCCCTGCCTCACGGTaGTGTTGTCCGTGCCTCGGT +
Preference number: 4 (lower is better)
Translates to: LSLSLSLCLSLSVFCVTHPPASR*CCPCLG
Trigger: ACCGAGGCACGGACAACATCACCGTGAGGCAGGGGG...ATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000333617.8
ENST00000490035.7
CDS-3UTR TCA 90 bp GACACTTGGGGGTTGATACAACAGGCACATGAGCCCTTAAAACTCCTTCCTGTTCCCCCTGCCTCACGGTaGTGTTGTCCGTGCCTCGGT +
Preference number: 4 (lower is better)
Translates to: DTWGLIQQAHEPLKLLPVPPASR*CCPCLG
Trigger: ACCGAGGCACGGACAACATCACCGTGAGGCAGGGGG...AACAGGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATCAACCCCCAAGTGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000490035.7
CDS-3UTR TCA 90 bp GACACTTGGGGGTTGATACAACAGGCACATGAGCCCTTAAAACTCCTTCCTGTTCCGGCTGAACTCTCCTaGCCATGGTGGCCACGCCGA +
Preference number: 4 (lower is better)
Translates to: DTWGLIQQAHEPLKLLPVPAELS*PWWPRR
Trigger: TCGGCGTGGCCACCATGGTCAGGAGAGTTCAGCCGG...AACAGGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATCAACCCCCAAGTGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000490035.7
CDS-3UTR TCA 90 bp ATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCGTAGTGCTCCTCAGTaGCGTTGGTCACCGTCAGGG +
Preference number: 4 (lower is better)
Translates to: INGLPHLSLSLSLCLSLSRSAPQ*RWSPSG
Trigger: CCCTGACGGTGACCAACGTCACTGAGGAGCACTACG...AGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp ATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCCACTCAAAGTCAGGTaGAGGCACTGCCGAGGCCTC +
Preference number: 4 (lower is better)
Translates to: INGLPHLSLSLSLCLSLSPLKVR*RHCRGL
Trigger: GAGGCCTCGGCAGTGCCTGCACCTGACTTTGAGTGG...AGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp GGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCCTCCAGCTCAACCCGTaGGTCCAGAGACCACTTGTC +
Preference number: 4 (lower is better)
Translates to: GLPHLSLSLSLCLSLSVFLQLNP*VQRPLV
Trigger: GACAAGTGGTCTCTGGACCCACGGGTTGAGCTGGAG...GAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
3UTR CAA 72 bp CTCCTTGCCTCTTTCCCCGCCATCTCCCCCAGCAACTaGTTACAGCCGCATCTCACAATTACAATGCAGGAC +
Preference number: 4 (lower is better)
Translates to: LLASFPAISPSN*LQPHLTITMQD
Trigger: GTCCTGCATTGTAATTGTGAGATGCGGCTGTAACAAGTTGCTGGGGGAGATGGCGGGGAAAGAGGCAAGGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CAA 72 bp GAAGTGGGTTCAAAAGAGGCTCCTGGTAGCTTGGGATaGCTGCAGCGTGCCATGAAGCTAGGACTTCCATGG +
Preference number: 4 (lower is better)
Translates to: EVGSKEAPGSLG*LQRAMKLGLPW
Trigger: CCATGGAAGTCCTAGCTTCATGGCACGCTGCAGCAATCCCAAGCTACCAGGAGCCTCTTTTGAACCCACTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp CTCCTAGGTCACCTCGTCCACGTCATAATTCCTTATGCTGTTTGCTTACCCCATCGTAGTGCTCCTCAGTaGCGTTGGTCACCGTCAGGG +
Preference number: 4 (lower is better)
Translates to: LLGHLVHVIIPYAVCLPHRSAPQ*RWSPSG
Trigger: CCCTGACGGTGACCAACGTCACTGAGGAGCACTACG...ATGGGGTAAGCAAACAGCATAAGGAATTATGACGTGGACGAGGTGACCTAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp TGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACACGCTCGACGGCCATTGGCCATaGAGACCAGAGTCACGTTGC +
Preference number: 4 (lower is better)
Translates to: CTHGPFPWHALERDTHTLDGHWP*RPESRC
Trigger: GCAACGTGACTCTGGTCTGCATGGCCAATGGCCGTC...GAGCGTGTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp ATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTCAGGTGCAGGCACTaGCGAGGCCTCACATTTGAG +
Preference number: 4 (lower is better)
Translates to: INGLPHLSLSLSLCLSLSVRCRH*RGLTFE
Trigger: CTCAAATGTGAGGCCTCGGCAGTGCCTGCACCTGAC...AGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp TGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACACGCTCAAGGCAGAGCAGAGATaGTGCCAGCAGCCACAGTGG +
Preference number: 4 (lower is better)
Translates to: CTHGPFPWHALERDTHTLKAEQR*CQQPQW
Trigger: CCACTGTGGCTGCTGGCAGCATCTCTGCTCTGCCTT...GAGCGTGTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp TGCCTCTTTCCCCGCCATCTCCCCCAGCAACTTGTTACAGCCGCATCTCACAATCTCAGGGATGGAATCTaGGACTCTGGAGGATTCAAG +
Preference number: 4 (lower is better)
Translates to: CLFPRHLPQQLVTAASHNLRDGI*DSGGFK
Trigger: CTTGAATCCTCCAGAGTCGCAGATTCCATCCCTGAG...ATTGTGAGATGCGGCTGTAACAAGTTGCTGGGGGAGATGGCGGGGAAAGAGGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp GGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCGGGATTGCTGCAGCGTaGCATGAAGCTAGGACTTCC +
Preference number: 4 (lower is better)
Translates to: GLPHLSLSLSLCLSLSVFGIAAA*HEARTS
Trigger: GGAAGTCCTAGCTTCATGGCACGCTGCAGCAATCCC...GAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TATTTTTACAGCATCCAGATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACGTCCGCGGGGTGCTCTaGAGGGGTGCGCGCTGCTCG +
Preference number: 4 (lower is better)
Translates to: YFYSIQMSLVWCSLYTAYVRGVL*RGARCS
Trigger: CGAGCAGCGCGCACCCCTCCAGAGCACCCCGCGGAC...GTATGCTGTGTAAAGACTACACCACACTAAGGACATCTGGATGCTGTAAAAATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000490035.7
CDS-3UTR CCA 90 bp ATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTAGGCTCCTGGTAGCTTaGGATTGCTGCAGCGTGCCA +
Preference number: 4 (lower is better)
Translates to: INGLPHLSLSLSLCLSLSRLLVA*DCCSVP
Trigger: TGGCACGCTGCAGCAATCCCAAGCTACCAGGAGCCT...AGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CAA 72 bp CTTAGGGAAGTGGGTTCAAAAGAGGCTCCTGGTAGCTaGGGATTGCTGCAGCGTGCCATGAAGCTAGGACTT +
Preference number: 4 (lower is better)
Translates to: LREVGSKEAPGS*GLLQRAMKLGL
Trigger: AAGTCCTAGCTTCATGGCACGCTGCAGCAATCCCAAGCTACCAGGAGCCTCTTTTGAACCCACTTCCCTAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp CTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATCTTCTACAACGCACCTaGGGATGGCTGTGTCCCCCT +
Preference number: 4 (lower is better)
Translates to: LSLSLSLCLSLSVFCVTHLLQRT*GWLCPP
Trigger: AGGGGGACACAGCCATCCTCAGGTGCGTTGTAGAAG...ATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000333617.8
ENST00000490035.7
CDS-3UTR GCA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTATGGCTGTGTCCCCCTaGCTCACGGTGATGTTGTCC +
Preference number: 4 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSMAVSP*LTVMLS
Trigger: GGACAACATCACCGTGAGGCAGGGGGACACAGCCAT...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000333617.8
ENST00000490035.7
CDS-3UTR GCA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTGACGGCCATTGGCCATaGAGACCAGAGTCACGTTGC +
Preference number: 4 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSDGHWP*RPESRC
Trigger: GCAACGTGACTCTGGTCTGCATGGCCAATGGCCGTC...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTGTCAGGTGCAGGCACTaGCGAGGCCTCACATTTGAG +
Preference number: 4 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSVRCRH*RGLTFE
Trigger: CTCAAATGTGAGGCCTCGGCAGTGCCTGCACCTGAC...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTAAGGCAGAGCAGAGATaGTGCCAGCAGCCACAGTGG +
Preference number: 4 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSKAEQR*CQQPQW
Trigger: CCACTGTGGCTGCTGGCAGCATCTCTGCTCTGCCTT...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp CTCCTAGGTCACCTCGTCCACGTCATAATTCCTTATGCTGTTTGCTTACCCCATGAGGACTCTGCTCCTTaGCTCTTTCCCCGCCATCTC +
Preference number: 4 (lower is better)
Translates to: LLGHLVHVIIPYAVCLPHEDSAP*LFPRHL
Trigger: GAGATGGCGGGGAAAGAGGCAAGGAGCAGAGTCCTC...ATGGGGTAAGCAAACAGCATAAGGAATTATGACGTGGACGAGGTGACCTAGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCCGAGGCCTCACATTTaGGTGAAGCTTGTCGTCCTG +
Preference number: 4 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSPRPHI*VKLVVL
Trigger: CAGGACGACAAGCTTCACTCAAATGTGAGGCCTCGG...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp GGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCAACAGTGGACCACCATaGACAGTGGTGCTGCAAACA +
Preference number: 4 (lower is better)
Translates to: GLPHLSLSLSLCLSLSVFNSGPP*TVVLQT
Trigger: TGTTTGCAGCACCACTGTTCATGGTGGTCCACTGTT...GAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp GAAACCACAACCAACTCAGGGATGGAATCTGCGACTCTGGAGGATTCAAGAAGCTGGGGCAGTCCTTCCTaGGAGAAAACCCATCTGCTT +
Preference number: 4 (lower is better)
Translates to: ETTTNSGMESATLEDSRSWGSPS*EKTHLL
Trigger: AAGCAGATGGGTTTTCTCTCAGGAAGGACTGCCCCA...GCTTCTTGAATCCTCCAGAGTCGCAGATTCCATCCCTGAGTTGGTTGTGGTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TGCCTCTTTCCCCGCCATCTCCCCCAGCAACTTGTTACAGCCGCATCTCACAATCTTACCTACACAAAGTaGTGTGATTGCTGGGAAGTG +
Preference number: 4 (lower is better)
Translates to: CLFPRHLPQQLVTAASHNLTYTK*CDCWEV
Trigger: CACTTCCCAGCAATCACATCACTTTGTGTAGGTAAG...ATTGTGAGATGCGGCTGTAACAAGTTGCTGGGGGAGATGGCGGGGAAAGAGGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TGCTGCTCATTTTCACAGTGGAGCAGGGCCTACCCTGTTAAATGCCAGGAAATAGTTCAGGACGGCCATTaGCCATGCAGACCAGAGTCA +
Preference number: 4 (lower is better)
Translates to: CCSFSQWSRAYPVKCQEIVQDGH*PCRPES
Trigger: TGACTCTGGTCTGCATGGCCAATGGCCGTCCTGAAC...TATTTCCTGGCATTTAACAGGGTAGGCCCTGCTCCACTGTGAAAATGAGCAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACACGCTCCAACCAACTCAGGGATaGAATCTGCGACTCTGGAGG +
Preference number: 4 (lower is better)
Translates to: CTHGPFPWHALERDTHTLQPTQG*NLRLWR
Trigger: CCTCCAGAGTCGCAGATTCCATCCCTGAGTTGGTTG...GAGCGTGTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TGCTGCTCATTTTCACAGTGGAGCAGGGCCTACCCTGTTAAATGCCAGGAAATACGGGGAGTTGTCCCATaGACAGGTCATTCTCCCACT +
Preference number: 4 (lower is better)
Translates to: CCSFSQWSRAYPVKCQEIRGVVP*TGHSPT
Trigger: AGTGGGAGAATGACCTGTCCATGGGACAACTCCCCG...TATTTCCTGGCATTTAACAGGGTAGGCCCTGCTCCACTGTGAAAATGAGCAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATCGGGGAGTTGTCCCATaGACAGGTCATTCTCCCACT +
Preference number: 4 (lower is better)
Translates to: LSLSLSLCLSLSVFCVTHRGVVP*TGHSPT
Trigger: AGTGGGAGAATGACCTGTCCATGGGACAACTCCCCG...ATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp CTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTCTTCTACAACGCACCTaGGGATGGCTGTGTCCCCCT +
Preference number: 4 (lower is better)
Translates to: LSLSLCLSLSVFCVTHFCLLQRT*GWLCPP
Trigger: AGGGGGACACAGCCATCCTCAGGTGCGTTGTAGAAG...ACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000333617.8
ENST00000490035.7
CDS-3UTR TCA 90 bp TGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACACGCTCATGCTGTGTCTGAACTaGGCAAGTGTAGGAACCCTC +
Preference number: 4 (lower is better)
Translates to: CTHGPFPWHALERDTHTLMLCLN*ASVGTL
Trigger: GAGGGTTCCTACACTTGCTCAGTTCAGACACAGCAT...GAGCGTGTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp ATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTGGTACCAATTTCTTaGATGGGGTGGGGGATTGTG +
Preference number: 4 (lower is better)
Translates to: INGLPHLSLSLSLCLSLSVVPIS*MGWGIV
Trigger: CACAATCCCCCACCCCATTCAAGAAATTGGTACCAC...AGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000333617.8
CDS-3UTR TCA 90 bp GAAACCACAACCAACTCAGGGATGGAATCTGCGACTCTGGAGGATTCAAGAAGCGTGGTACGGCCAGACTaGTGGATCCATTTATTCCTC +
Preference number: 4 (lower is better)
Translates to: ETTTNSGMESATLEDSRSVVRPD*WIHLFL
Trigger: GAGGAATAAATGGATCCATCAGTCTGGCCGTACCAC...GCTTCTTGAATCCTCCAGAGTCGCAGATTCCATCCCTGAGTTGGTTGTGGTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp CTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTGTCTAGCATTTGCGGCATaGCTAGTGCTCTGGGGAGGG +
Preference number: 4 (lower is better)
Translates to: LSLSLSLSLCILCDAFLCLAFAA*LVLWGG
Trigger: CCCTCCCCAGAGCACTAGTCATGCCGCAAATGCTAG...ACACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp ATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTAGCCTGGGCATCTGTTaGCTTTTTCTGCCTTGCTCA +
Preference number: 4 (lower is better)
Translates to: INGLPHLSLSLSLCLSLSSLGIC*LFLPCS
Trigger: TGAGCAAGGCAGAAAAAGTCAACAGATGCCCAGGCT...AGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp GGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCGCAGGATATAAACCTTaGACTGTTCCTGTGGGTCTG +
Preference number: 4 (lower is better)
Translates to: GLPHLSLSLSLCLSLSVFAGYKP*TVPVGL
Trigger: CAGACCCACAGGAACAGTTCAAGGTTTATATCCTGC...GAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp GAAACCACAACCAACTCAGGGATGGAATCTGCGACTCTGGAGGATTCAAGAAGCAAGACACTTGGGGGTTaGTACAACAGGCACATGAGC +
Preference number: 4 (lower is better)
Translates to: ETTTNSGMESATLEDSRSKTLGG*YNRHMS
Trigger: GCTCATGTGCCTGTTGTATCAACCCCCAAGTGTCTT...GCTTCTTGAATCCTCCAGAGTCGCAGATTCCATCCCTGAGTTGGTTGTGGTTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp CTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTGTAAGGCAGAGCAGAGATaGTGCCAGCAGCCACAGTGG +
Preference number: 4 (lower is better)
Translates to: LSLSLSLSLCILCDAFLCKAEQR*CQQPQW
Trigger: CCACTGTGGCTGCTGGCAGCATCTCTGCTCTGCCTT...ACACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp GTAAAGCCCTGGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATTGCGCAGAGCGGGCTTTaGCAGTTTATGGTCCTTTCC +
Preference number: 4 (lower is better)
Translates to: VKPWIVLILQEAPWVKVIAQSGL*QFMVLS
Trigger: GGAAAGGACCATAAACTGGCAAAGCCCGCTCTGCGC...AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000490035.7
CDS-3UTR GCA 90 bp CAAACAAGACTTTTTATCCAGCAAGGCAAAACCTTTGCTCAACAATTGCACAGATGGAGGGGTGCGCGCTaGTCGCGAGGAGAGGCTTCA +
Preference number: 4 (lower is better)
Translates to: QTRLFIQQGKTFAQQLHRWRGAR*SRGEAS
Trigger: TGAAGCCTCTCCTCGCGAGCAGCGCGCACCCCTCCA...TCTGTGCAATTGTTGAGCAAAGGTTTTGCCTTGCTGGATAAAAAGTCTTGTTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000490035.7
CDS-3UTR GCA 90 bp CTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTGTCTGCCTGGGACCCCATaGTTACCGCCATCAGCACAA +
Preference number: 4 (lower is better)
Translates to: LSLSLSLSLCILCDAFLCLPGTP*LPPSAQ
Trigger: TTGTGCTGATGGCGGTAAGCATGGGGTCCCAGGCAG...ACACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp AGTCTATGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACGGGATTGCTGCAGCGTaGCATGAAGCTAGGACTTCC +
Preference number: 4 (lower is better)
Translates to: SLCTHGPFPWHALERDTHGIAAA*HEARTS
Trigger: GGAAGTCCTAGCTTCATGGCACGCTGCAGCAATCCC...GTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACATAGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp ATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCCGAGGAGACCTCGTTaGCAGCTTTGCACTCATATT +
Preference number: 4 (lower is better)
Translates to: INGLPHLSLSLSLCLSLSPRRPR*QLCTHI
Trigger: AATATGAGTGCAAAGCTGCCAACGAGGTCTCCTCGG...AGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp GGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCGAGTCTATGTACACATaGACCATTCCCTTGGCATGC +
Preference number: 4 (lower is better)
Translates to: GLPHLSLSLSLCLSLSVFESMYT*TIPLAC
Trigger: GCATGCCAAGGGAATGGTCCATGTGTACATAGACTC...GAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp GAAACCACAACCAACTCAGGGATGGAATCTGCGACTCTGGAGGATTCAAGAAGCGACCACCATGAACAGTaGTGCTGCAAACACCATCAG +
Preference number: 4 (lower is better)
Translates to: ETTTNSGMESATLEDSRSDHHEQ*CCKHHQ
Trigger: CTGATGGTGTTTGCAGCACCACTGTTCATGGTGGTC...GCTTCTTGAATCCTCCAGAGTCGCAGATTCCATCCCTGAGTTGGTTGTGGTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp ATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCATGTCCAGCAAAAATaGTGCCAGAACGGTTCAACC +
Preference number: 4 (lower is better)
Translates to: INGLPHLSLSLSLCLSLSHVQQK*CQNGST
Trigger: GGTTGAACCGTTCTGGCATCATTTTTGCTGGACATG...AGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTATGCTGTGTCTGAACTaGGCAAGTGTAGGAACCCTC +
Preference number: 4 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSMLCLN*ASVGTL
Trigger: GAGGGTTCCTACACTTGCTCAGTTCAGACACAGCAT...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp CTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTGTCTGACTGCTCCCTGGTaGTGCCAAGGATCTCCAGAT +
Preference number: 4 (lower is better)
Translates to: LSLSLSLSLCILCDAFLCLTAPW*CQGSPD
Trigger: ATCTGGAGATCCTTGGCATCACCAGGGAGCAGTCAG...ACACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTGTGGTACGGCCAGACTaGTGGATCCATTTATTCCTC +
Preference number: 4 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSVVRPD*WIHLFL
Trigger: GAGGAATAAATGGATCCATCAGTCTGGCCGTACCAC...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TGCCTCTTTCCCCGCCATCTCCCCCAGCAACTTGTTACAGCCGCATCTCACAATTTTCTTCCCCACAGATaGAAAAAGATGAAGGAAGGA +
Preference number: 4 (lower is better)
Translates to: CLFPRHLPQQLVTAASHNFLPHR*KKMKEG
Trigger: TCCTTCCTTCATCTTTTTTCATCTGTGGGGAAGAAA...ATTGTGAGATGCGGCTGTAACAAGTTGCTGGGGGAGATGGCGGGGAAAGAGGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp CTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTGTTGCCAGTGTCTGAGCTaGGCTCCTTCGCTCTGTAAC +
Preference number: 4 (lower is better)
Translates to: LSLSLSLSLCILCDAFLCCQCLS*APSLCN
Trigger: GTTACAGAGCGAAGGAGCTCAGCTCAGACACTGGCA...ACACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000490035.7
CDS-3UTR TCA 90 bp CCCCCTTCATGTATAAACACACAAAGTTGTGAAATAAACGGTCTCCCCCATCTCTGTTTCCGATCCGGCTaGACTCTCCTGACCATGGTG +
Preference number: 4 (lower is better)
Translates to: PPSCINTQSCEINGLPHLCFRSG*TLLTMV
Trigger: CACCATGGTCAGGAGAGTTCAGCCGGATCGGAAACA...GAGATGGGGGAGACCGTTTATTTCACAACTTTGTGTGTTTATACATGAAGGGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000490035.7
CDS-3UTR TCA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTTCTTTCACTGGGAGTTaGCACTTGGAGACCTTCCTG +
Preference number: 4 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSSFTGS*HLETFL
Trigger: CAGGAAGGTCTCCAAGTGTCAACTCCCAGTGAAAGA...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp GACACTTGGGGGTTGATACAACAGGCACATGAGCCCTTAAAACTCCTTCCTGTTAGCCTGGGCATCTGTTaGCTTTTTCTGCCTTGCTCA +
Preference number: 4 (lower is better)
Translates to: DTWGLIQQAHEPLKLLPVSLGIC*LFLPCS
Trigger: TGAGCAAGGCAGAAAAAGTCAACAGATGCCCAGGCT...AACAGGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATCAACCCCCAAGTGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TGCTGCTCATTTTCACAGTGGAGCAGGGCCTACCCTGTTAAATGCCAGGAAATAGAGAAGTTCCTCCCATaGAACCAAGACCTTGTCCTC +
Preference number: 4 (lower is better)
Translates to: CCSFSQWSRAYPVKCQEIEKFLP*NQDLVL
Trigger: GAGGACAAGGTCTTGGTTTCATGGGAGGAACTTCTC...TATTTCCTGGCATTTAACAGGGTAGGCCCTGCTCCACTGTGAAAATGAGCAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp CTCCTAGGTCACCTCGTCCACGTCATAATTCCTTATGCTGTTTGCTTACCCCATGAGAAGTTCCTCCCATaGAACCAAGACCTTGTCCTC +
Preference number: 4 (lower is better)
Translates to: LLGHLVHVIIPYAVCLPHEKFLP*NQDLVL
Trigger: GAGGACAAGGTCTTGGTTTCATGGGAGGAACTTCTC...ATGGGGTAAGCAAACAGCATAAGGAATTATGACGTGGACGAGGTGACCTAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp GTAAAGCCCTGGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATTTGGGGCAGTCCTTCCTaGGAGAAAACCCATCTGCTT +
Preference number: 4 (lower is better)
Translates to: VKPWIVLILQEAPWVKVIWGSPS*EKTHLL
Trigger: AAGCAGATGGGTTTTCTCTCAGGAAGGACTGCCCCA...AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACACGCTCAGCGAGAAGTCTGTCTaGCTTGGAAGAGAAGGCAAA +
Preference number: 4 (lower is better)
Translates to: CTHGPFPWHALERDTHTLSEKSV*LGREGK
Trigger: TTTGCCTTCTCTTCCAAGTCAGACAGACTTCTCGCT...GAGCGTGTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp ATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTAGCGAGAAGTCTGTCTaGCTTGGAAGAGAAGGCAAA +
Preference number: 4 (lower is better)
Translates to: INGLPHLSLSLSLCLSLSSEKSV*LGREGK
Trigger: TTTGCCTTCTCTTCCAAGTCAGACAGACTTCTCGCT...AGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp ATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCCCTCACTTTCAGGATaGGAAAACCAAGACTCAGGA +
Preference number: 4 (lower is better)
Translates to: INGLPHLSLSLSLCLSLSPSLSG*ENQDSG
Trigger: TCCTGAGTCTTGGTTTTCTCATCCTGAAAGTGAGGG...AGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp AGTCTATGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACTTACAGTTCAGCCTTTaGACCTGCCTGGGACCCCAT +
Preference number: 4 (lower is better)
Translates to: SLCTHGPFPWHALERDTHLQFSL*TCLGPH
Trigger: ATGGGGTCCCAGGCAGGTTCAAAGGCTGAACTGTAA...GTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACATAGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp CTCCTAGGTCACCTCGTCCACGTCATAATTCCTTATGCTGTTTGCTTACCCCATTCATATTTGCCTGACTaGTCCCTGGTGATGCCAAGG +
Preference number: 4 (lower is better)
Translates to: LLGHLVHVIIPYAVCLPHSYLPD*SLVMPR
Trigger: CCTTGGCATCACCAGGGAGCAGTCAGGCAAATATGA...ATGGGGTAAGCAAACAGCATAAGGAATTATGACGTGGACGAGGTGACCTAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp CTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATGCACTTCCTAGCATTTaGGGCATGACTAGTGCTCTG +
Preference number: 4 (lower is better)
Translates to: LSLSLSLCLSLSVFCVTHALPSI*GMTSAL
Trigger: CAGAGCACTAGTCATGCCGCAAATGCTAGGAAGTGC...ATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp CTCCTAGGTCACCTCGTCCACGTCATAATTCCTTATGCTGTTTGCTTACCCCATGCACTTCCTAGCATTTaGGGCATGACTAGTGCTCTG +
Preference number: 4 (lower is better)
Translates to: LLGHLVHVIIPYAVCLPHALPSI*GMTSAL
Trigger: CAGAGCACTAGTCATGCCGCAAATGCTAGGAAGTGC...ATGGGGTAAGCAAACAGCATAAGGAATTATGACGTGGACGAGGTGACCTAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp TGCCTCTTTCCCCGCCATCTCCCCCAGCAACTTGTTACAGCCGCATCTCACAATCTCCATTGTTCACACTaGTTAGGGAACACTTTCAAT +
Preference number: 4 (lower is better)
Translates to: CLFPRHLPQQLVTAASHNLHCSH*LGNTFN
Trigger: ATTGAAAGTGTTCCCTAAGCAGTGTGAACAATGGAG...ATTGTGAGATGCGGCTGTAACAAGTTGCTGGGGGAGATGGCGGGGAAAGAGGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCAGGGATGGAATCTaGGACTCTGGAGGATTCAAG +
Preference number: 4 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSLRDGI*DSGGFK
Trigger: CTTGAATCCTCCAGAGTCGCAGATTCCATCCCTGAG...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp GTAAAGCCCTGGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATTGAACAGGCAGTCCTGTaGGAAGAAGGCAGAGCAATC +
Preference number: 4 (lower is better)
Translates to: VKPWIVLILQEAPWVKVIEQAVL*EEGRAI
Trigger: GATTGCTCTGCCTTCTTCCCACAGGACTGCCTGTTC...AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000490035.7
CDS-3UTR CCA 90 bp ATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTGTATTCCAGAGAATaGCGTTTCTCCAGCTCAACC +
Preference number: 4 (lower is better)
Translates to: INGLPHLSLSLSLCLSLSLYSRE*RFSSST
Trigger: GGTTGAGCTGGAGAAACGCCATTCTCTGGAATACAG...AGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp GAAACCACAACCAACTCAGGGATGGAATCTGCGACTCTGGAGGATTCAAGAAGCAAACTTGGGAGGTCTTaGGCTCATGCTGTGTCTGAA +
Preference number: 4 (lower is better)
Translates to: ETTTNSGMESATLEDSRSKLGRS*AHAVSE
Trigger: TTCAGACACAGCATGAGCCCAAGACCTCCCAAGTTT...GCTTCTTGAATCCTCCAGAGTCGCAGATTCCATCCCTGAGTTGGTTGTGGTTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTGTTCAGGACGGCCATTaGCCATGCAGACCAGAGTCA +
Preference number: 4 (lower is better)
Translates to: LSLSLCLSLSVFCVTHFCVQDGH*PCRPES
Trigger: TGACTCTGGTCTGCATGGCCAATGGCCGTCCTGAAC...ACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATAAGCTTGTCGTCCTGTaGTGGCTTCATTGCTCTTGG +
Preference number: 4 (lower is better)
Translates to: LSLSLSLCLSLSVFCVTHKLVVL*WLHCSW
Trigger: CCAAGAGCAATGAAGCCACCACAGGACGACAAGCTT...ATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TGCTGCTCATTTTCACAGTGGAGCAGGGCCTACCCTGTTAAATGCCAGGAAATAAAGCTTGTCGTCCTGTaGTGGCTTCATTGCTCTTGG +
Preference number: 4 (lower is better)
Translates to: CCSFSQWSRAYPVKCQEIKLVVL*WLHCSW
Trigger: CCAAGAGCAATGAAGCCACCACAGGACGACAAGCTT...TATTTCCTGGCATTTAACAGGGTAGGCCCTGCTCCACTGTGAAAATGAGCAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp GAAACCACAACCAACTCAGGGATGGAATCTGCGACTCTGGAGGATTCAAGAAGCCATGGACCATTCCCTTaGCATGCTTTAGAGAGAGAC +
Preference number: 4 (lower is better)
Translates to: ETTTNSGMESATLEDSRSHGPFP*HALERD
Trigger: GTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATG...GCTTCTTGAATCCTCCAGAGTCGCAGATTCCATCCCTGAGTTGGTTGTGGTTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CCCCCTTCATGTATAAACACACAAAGTTGTGAAATAAACGGTCTCCCCCATCTCGGACTAGGAGGAATATaGGGTCCTGCCCTTGGAAGG +
Preference number: 4 (lower is better)
Translates to: PPSCINTQSCEINGLPHLGLGGI*GPALGR
Trigger: CCTTCCAAGGGCAGGACCCCATATTCCTCCTAGTCC...GAGATGGGGGAGACCGTTTATTTCACAACTTTGTGTGTTTATACATGAAGGGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CTCCTAGGTCACCTCGTCCACGTCATAATTCCTTATGCTGTTTGCTTACCCCATTGCTCATTTTCACAGTaGAGCAGGGCCTACCCTGTT +
Preference number: 4 (lower is better)
Translates to: LLGHLVHVIIPYAVCLPHCSFSQ*SRAYPV
Trigger: AACAGGGTAGGCCCTGCTCCACTGTGAAAATGAGCA...ATGGGGTAAGCAAACAGCATAAGGAATTATGACGTGGACGAGGTGACCTAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTGCTCATTTTCACAGTaGAGCAGGGCCTACCCTGTT +
Preference number: 4 (lower is better)
Translates to: LSLSLSLCLSLSVFCVTHCSFSQ*SRAYPV
Trigger: AACAGGGTAGGCCCTGCTCCACTGTGAAAATGAGCA...ATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CTCCTAGGTCACCTCGTCCACGTCATAATTCCTTATGCTGTTTGCTTACCCCATCTGGGAGTTGACACTTaGAGACCTTCCTGTTTCTGG +
Preference number: 4 (lower is better)
Translates to: LLGHLVHVIIPYAVCLPHLGVDT*RPSCFW
Trigger: CCAGAAACAGGAAGGTCTCCAAGTGTCAACTCCCAG...ATGGGGTAAGCAAACAGCATAAGGAATTATGACGTGGACGAGGTGACCTAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp ATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTTGGAATCTGCGACTCTaGAGGATTCAAGAAGCTCAC +
Preference number: 4 (lower is better)
Translates to: INGLPHLSLSLSLCLSLSWNLRL*RIQEAH
Trigger: GTGAGCTTCTTGAATCCTCCAGAGTCGCAGATTCCA...AGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp ATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTATTTCCCTTGCTTTaGGGTCGGGTGAGACAACTA +
Preference number: 4 (lower is better)
Translates to: INGLPHLSLSLSLCLSLSLFPLL*GRVRQL
Trigger: TAGTTGTCTCACCCGACCCCAAAGCAAGGGAAATAG...AGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp GGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCAAAGACTTAGGGAAGTaGGTTCAAAAGAGGCTCCTG +
Preference number: 4 (lower is better)
Translates to: GLPHLSLSLSLCLSLSVFKDLGK*VQKRLL
Trigger: CAGGAGCCTCTTTTGAACCCACTTCCCTAAGTCTTT...GAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TGCTGCTCATTTTCACAGTGGAGCAGGGCCTACCCTGTTAAATGCCAGGAAATATTAGGGAGCAGAACTTaGCCACAGTTCACCAGGATG +
Preference number: 4 (lower is better)
Translates to: CCSFSQWSRAYPVKCQEILGSRT*PQFTRM
Trigger: CATCCTGGTGAACTGTGGCCAAGTTCTGCTCCCTAA...TATTTCCTGGCATTTAACAGGGTAGGCCCTGCTCCACTGTGAAAATGAGCAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CAA 72 bp CAGCACAATGAGTCTATGTACACATGGACCATTCCCTaGGCATGCTTTAGAGAGAGACACACACACGCTCAC +
Preference number: 4 (lower is better)
Translates to: QHNESMYTWTIP*ACFRERHTHAH
Trigger: GTGAGCGTGTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACATAGACTCATTGTGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp CTCCTAGGTCACCTCGTCCACGTCATAATTCCTTATGCTGTTTGCTTACCCCATCATGTCCAGCAAAAATaGTGCCAGAACGGTTCAACC +
Preference number: 4 (lower is better)
Translates to: LLGHLVHVIIPYAVCLPHHVQQK*CQNGST
Trigger: GGTTGAACCGTTCTGGCATCATTTTTGCTGGACATG...ATGGGGTAAGCAAACAGCATAAGGAATTATGACGTGGACGAGGTGACCTAGGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TATTTTTACAGCATCCAGATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACCGTAGTGCTCCTCAGTaGCGTTGGTCACCGTCAGGG +
Preference number: 4 (lower is better)
Translates to: YFYSIQMSLVWCSLYTAYRSAPQ*RWSPSG
Trigger: CCCTGACGGTGACCAACGTCACTGAGGAGCACTACG...GTATGCTGTGTAAAGACTACACCACACTAAGGACATCTGGATGCTGTAAAAATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp GAAACCACAACCAACTCAGGGATGGAATCTGCGACTCTGGAGGATTCAAGAAGCTTTACAGTGATATTCTaGGTGACTCCCCACTCGGTT +
Preference number: 4 (lower is better)
Translates to: ETTTNSGMESATLEDSRSFTVIF*VTPHSV
Trigger: AACCGAGTGGGGAGTCACTCAGAATATCACTGTAAA...GCTTCTTGAATCCTCCAGAGTCGCAGATTCCATCCCTGAGTTGGTTGTGGTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACACGCTCGGGAACAAACGGTGCTaGCATGGCAGACATTTATTT +
Preference number: 4 (lower is better)
Translates to: CTHGPFPWHALERDTHTLGNKRC*HGRHLF
Trigger: AAATAAATGTCTGCCATGTCAGCACCGTTTGTTCCC...GAGCGTGTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp GAAACCACAACCAACTCAGGGATGGAATCTGCGACTCTGGAGGATTCAAGAAGCGGGAACAAACGGTGCTaGCATGGCAGACATTTATTT +
Preference number: 4 (lower is better)
Translates to: ETTTNSGMESATLEDSRSGNKRC*HGRHLF
Trigger: AAATAAATGTCTGCCATGTCAGCACCGTTTGTTCCC...GCTTCTTGAATCCTCCAGAGTCGCAGATTCCATCCCTGAGTTGGTTGTGGTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp GACACTTGGGGGTTGATACAACAGGCACATGAGCCCTTAAAACTCCTTCCTGTTGCAGGATATAAACCTTaGACTGTTCCTGTGGGTCTG +
Preference number: 4 (lower is better)
Translates to: DTWGLIQQAHEPLKLLPVAGYKP*TVPVGL
Trigger: CAGACCCACAGGAACAGTTCAAGGTTTATATCCTGC...AACAGGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATCAACCCCCAAGTGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp CTCCTAGGTCACCTCGTCCACGTCATAATTCCTTATGCTGTTTGCTTACCCCATGATACAACAGGCACATaGGCCCTTAAAACTCCTTCC +
Preference number: 4 (lower is better)
Translates to: LLGHLVHVIIPYAVCLPHDTTGT*ALKTPS
Trigger: GGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATC...ATGGGGTAAGCAAACAGCATAAGGAATTATGACGTGGACGAGGTGACCTAGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp GAAACCACAACCAACTCAGGGATGGAATCTGCGACTCTGGAGGATTCAAGAAGCAGAACCCAATTCTCCTaGCTCCCAATTCAATACACC +
Preference number: 4 (lower is better)
Translates to: ETTTNSGMESATLEDSRSRTQFS*LPIQYT
Trigger: GGTGTATTGAATTGGGAGTCAGGAGAATTGGGTTCT...GCTTCTTGAATCCTCCAGAGTCGCAGATTCCATCCCTGAGTTGGTTGTGGTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACACGCTCGTACTTGGCCCAGGATaGCAGAAAACTAATGTTTCC +
Preference number: 4 (lower is better)
Translates to: CTHGPFPWHALERDTHTLVLGPG*QKTNVS
Trigger: GGAAACATTAGTTTTCTGTCATCCTGGGCCAAGTAC...GAGCGTGTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp AGTCTATGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACTCATATTTGCCTGACTaGTCCCTGGTGATGCCAAGG +
Preference number: 4 (lower is better)
Translates to: SLCTHGPFPWHALERDTHSYLPD*SLVMPR
Trigger: CCTTGGCATCACCAGGGAGCAGTCAGGCAAATATGA...GTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACATAGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp GACACTTGGGGGTTGATACAACAGGCACATGAGCCCTTAAAACTCCTTCCTGTTGAGGTAAAACAGGGCTaGTTAGGATCTCCAAGTGGT +
Preference number: 4 (lower is better)
Translates to: DTWGLIQQAHEPLKLLPVEVKQG*LGSPSG
Trigger: ACCACTTGGAGATCCTAAGCAGCCCTGTTTTACCTC...AACAGGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATCAACCCCCAAGTGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTACTGGGAAAAACATCTaGAGAGGAGCACAAGGAGTG +
Preference number: 4 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSTGKNI*RGAQGV
Trigger: CACTCCTTGTGCTCCTCTGCAGATGTTTTTCCCAGT...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp AGTCTATGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACCTGTTCCTGTGGGTCTaGTTCCTTTGGCTAAGGCAA +
Preference number: 4 (lower is better)
Translates to: SLCTHGPFPWHALERDTHLFLWV*FLWLRQ
Trigger: TTGCCTTAGCCAAAGGAAGCAGACCCACAGGAACAG...GTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACATAGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp GGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCGGACAAGAGGATCTGTaGTCAATGCATCTAGAACAT +
Preference number: 4 (lower is better)
Translates to: GLPHLSLSLSLCLSLSVFGQEDL*SMHLEH
Trigger: ATGTTCTAGATGCATTGAGCACAGATCCTCTTGTCC...GAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp GTAAAGCCCTGGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATTAAGCTTGTCGTCCTGTaGTGGCTTCATTGCTCTTGG +
Preference number: 4 (lower is better)
Translates to: VKPWIVLILQEAPWVKVIKLVVL*WLHCSW
Trigger: CCAAGAGCAATGAAGCCACCACAGGACGACAAGCTT...AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTGTGAGGGAGGAAAGGTaGGTGAAAAGGGAGTATCTA +
Preference number: 4 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSVREER*VKREYL
Trigger: TAGATACTCCCTTTTCACCCACCTTTCCTCCCTCAC...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTGAGTCTATGTACACATaGACCATTCCCTTGGCATGC +
Preference number: 4 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSESMYT*TIPLAC
Trigger: GCATGCCAAGGGAATGGTCCATGTGTACATAGACTC...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CCCCCTTCATGTATAAACACACAAAGTTGTGAAATAAACGGTCTCCCCCATCTCGCCTGTGACATGCCATaGGGATCTGTTCCTGAAGGT +
Preference number: 4 (lower is better)
Translates to: PPSCINTQSCEINGLPHLACDMP*GSVPEG
Trigger: ACCTTCAGGAACAGATCCCCATGGCATGTCACAGGC...GAGATGGGGGAGACCGTTTATTTCACAACTTTGTGTGTTTATACATGAAGGGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTGCCTGTGACATGCCATaGGGATCTGTTCCTGAAGGT +
Preference number: 4 (lower is better)
Translates to: LSLSLCLSLSVFCVTHFCACDMP*GSVPEG
Trigger: ACCTTCAGGAACAGATCCCCATGGCATGTCACAGGC...ACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTGTCAACCAACTCAGGGATaGAATCTGCGACTCTGGAGG +
Preference number: 4 (lower is better)
Translates to: LSLSLSLSLCILCDAFLCQPTQG*NLRLWR
Trigger: CCTCCAGAGTCGCAGATTCCATCCCTGAGTTGGTTG...ACACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp ATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTAAAGACTTAGGGAAGTaGGTTCAAAAGAGGCTCCTG +
Preference number: 4 (lower is better)
Translates to: INGLPHLSLSLSLCLSLSKDLGK*VQKRLL
Trigger: CAGGAGCCTCTTTTGAACCCACTTCCCTAAGTCTTT...AGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp CCCCCTTCATGTATAAACACACAAAGTTGTGAAATAAACGGTCTCCCCCATCTCCAGGTCCTTTTTGCTTaGAGTGCACGGTGGTACCAA +
Preference number: 4 (lower is better)
Translates to: PPSCINTQSCEINGLPHLQVLFA*SARWYQ
Trigger: TTGGTACCACCGTGCACTTCAAGCAAAAAGGACCTG...GAGATGGGGGAGACCGTTTATTTCACAACTTTGTGTGTTTATACATGAAGGGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENST00000333617.8
CDS-3UTR TCA 90 bp TGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACACGCTCTCTATTAACATTTGCTaGGAAGGCAGAGCAGAGATG +
Preference number: 4 (lower is better)
Translates to: CTHGPFPWHALERDTHTLSINIC*EGRAEM
Trigger: CATCTCTGCTCTGCCTTCTCAGCAAATGTTAATAGA...GAGCGTGTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACACGCTCAAACACACAAAGTTGTaGAATAAACGGTCTCCCCCA +
Preference number: 4 (lower is better)
Translates to: CTHGPFPWHALERDTHTLKHTKL*NKRSPP
Trigger: TGGGGGAGACCGTTTATTTCACAACTTTGTGTGTTT...GAGCGTGTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTGAGCATAGCTTGGTTTaGATACACACTGATGCCATG +
Preference number: 4 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSEHSLV*IHTDAM
Trigger: CATGGCATCAGTGTGTATTCAAACCAAGCTATGCTC...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp CTCCTAGGTCACCTCGTCCACGTCATAATTCCTTATGCTGTTTGCTTACCCCATGAGCATAGCTTGGTTTaGATACACACTGATGCCATG +
Preference number: 4 (lower is better)
Translates to: LLGHLVHVIIPYAVCLPHEHSLV*IHTDAM
Trigger: CATGGCATCAGTGTGTATTCAAACCAAGCTATGCTC...ATGGGGTAAGCAAACAGCATAAGGAATTATGACGTGGACGAGGTGACCTAGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp CTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTACAGTGATATTCTaGGTGACTCCCCACTCGGTT +
Preference number: 4 (lower is better)
Translates to: LSLSLSLCLSLSVFCVTHFTVIF*VTPHSV
Trigger: AACCGAGTGGGGAGTCACTCAGAATATCACTGTAAA...ATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp CCCCCTTCATGTATAAACACACAAAGTTGTGAAATAAACGGTCTCCCCCATCTCTCTTTCACTGGGAGTTaGCACTTGGAGACCTTCCTG +
Preference number: 4 (lower is better)
Translates to: PPSCINTQSCEINGLPHLSFTGS*HLETFL
Trigger: CAGGAAGGTCTCCAAGTGTCAACTCCCAGTGAAAGA...GAGATGGGGGAGACCGTTTATTTCACAACTTTGTGTGTTTATACATGAAGGGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp ATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTTGCAAACACCATCAGTaGAACAGAACAGGGATTATG +
Preference number: 4 (lower is better)
Translates to: INGLPHLSLSLSLCLSLSCKHHQ*NRTGIM
Trigger: CATAATCCCTGTTCTGTTTCACTGATGGTGTTTGCA...AGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp CCCCCTTCATGTATAAACACACAAAGTTGTGAAATAAACGGTCTCCCCCATCTCAACAGTGGACCACCATaGACAGTGGTGCTGCAAACA +
Preference number: 4 (lower is better)
Translates to: PPSCINTQSCEINGLPHLNSGPP*TVVLQT
Trigger: TGTTTGCAGCACCACTGTTCATGGTGGTCCACTGTT...GAGATGGGGGAGACCGTTTATTTCACAACTTTGTGTGTTTATACATGAAGGGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp GACACTTGGGGGTTGATACAACAGGCACATGAGCCCTTAAAACTCCTTCCTGTTTTCTCTGTCCTCTCATaGACTGAACCACTTTCAGTG +
Preference number: 4 (lower is better)
Translates to: DTWGLIQQAHEPLKLLPVFSVLS*TEPLSV
Trigger: CACTGAAAGTGGTTCAGTTCATGAGAGGACAGAGAA...AACAGGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATCAACCCCCAAGTGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp AGTCTATGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACGATACAACAGGCACATaGGCCCTTAAAACTCCTTCC +
Preference number: 4 (lower is better)
Translates to: SLCTHGPFPWHALERDTHDTTGT*ALKTPS
Trigger: GGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATC...GTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACATAGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp GACACTTGGGGGTTGATACAACAGGCACATGAGCCCTTAAAACTCCTTCCTGTTAGAACCCAATTCTCCTaGCTCCCAATTCAATACACC +
Preference number: 4 (lower is better)
Translates to: DTWGLIQQAHEPLKLLPVRTQFS*LPIQYT
Trigger: GGTGTATTGAATTGGGAGTCAGGAGAATTGGGTTCT...AACAGGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATCAACCCCCAAGTGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp GAAACCACAACCAACTCAGGGATGGAATCTGCGACTCTGGAGGATTCAAGAAGCCTCAGGAAAGTTAAATaGCTTGCCAATGTCTCACAG +
Preference number: 4 (lower is better)
Translates to: ETTTNSGMESATLEDSRSLRKVK*LANVSQ
Trigger: CTGTGAGACATTGGCAAGTCATTTAACTTTCCTGAG...GCTTCTTGAATCCTCCAGAGTCGCAGATTCCATCCCTGAGTTGGTTGTGGTTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp CTCCTAGGTCACCTCGTCCACGTCATAATTCCTTATGCTGTTTGCTTACCCCATGTACTTGGCCCAGGATaGCAGAAAACTAATGTTTCC +
Preference number: 4 (lower is better)
Translates to: LLGHLVHVIIPYAVCLPHVLGPG*QKTNVS
Trigger: GGAAACATTAGTTTTCTGTCATCCTGGGCCAAGTAC...ATGGGGTAAGCAAACAGCATAAGGAATTATGACGTGGACGAGGTGACCTAGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp TATTTTTACAGCATCCAGATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACGACGGCCATTGGCCATaGAGACCAGAGTCACGTTGC +
Preference number: 4 (lower is better)
Translates to: YFYSIQMSLVWCSLYTAYDGHWP*RPESRC
Trigger: GCAACGTGACTCTGGTCTGCATGGCCAATGGCCGTC...GTATGCTGTGTAAAGACTACACCACACTAAGGACATCTGGATGCTGTAAAAATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp TATTTTTACAGCATCCAGATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACGTCAGGTGCAGGCACTaGCGAGGCCTCACATTTGAG +
Preference number: 4 (lower is better)
Translates to: YFYSIQMSLVWCSLYTAYVRCRH*RGLTFE
Trigger: CTCAAATGTGAGGCCTCGGCAGTGCCTGCACCTGAC...GTATGCTGTGTAAAGACTACACCACACTAAGGACATCTGGATGCTGTAAAAATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp GGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCGATTTACTCAACACATaGTGCTCATTTTCACAGTGG +
Preference number: 4 (lower is better)
Translates to: GLPHLSLSLSLCLSLSVFDLLNT*CSFSQW
Trigger: CCACTGTGAAAATGAGCAGCATGTGTTGAGTAAATC...GAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp GTAAAGCCCTGGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATTGAGGTAAAACAGGGCTaGTTAGGATCTCCAAGTGGT +
Preference number: 4 (lower is better)
Translates to: VKPWIVLILQEAPWVKVIEVKQG*LGSPSG
Trigger: ACCACTTGGAGATCCTAAGCAGCCCTGTTTTACCTC...AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp CTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTGTTTAAGGCCTGTGACATaGCATGGGGATCTGTTCCTG +
Preference number: 4 (lower is better)
Translates to: LSLSLSLSLCILCDAFLCLRPVT*HGDLFL
Trigger: CAGGAACAGATCCCCATGGCATGTCACAGGCCTTAA...ACACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp CTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTTTAAGGCCTGTGACATaGCATGGGGATCTGTTCCTG +
Preference number: 4 (lower is better)
Translates to: LSLSLCLSLSVFCVTHFCLRPVT*HGDLFL
Trigger: CAGGAACAGATCCCCATGGCATGTCACAGGCCTTAA...ACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp GTAAAGCCCTGGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATTTTTCCAACCAGTTGGTaGTTTTCAGTGCGGGGTTTC +
Preference number: 4 (lower is better)
Translates to: VKPWIVLILQEAPWVKVIFPTSW*FSVRGF
Trigger: GAAACCCCGCACTGAAAAGCACCAACTGGTTGGAAA...AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp AGTCTATGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACTTTCCAACCAGTTGGTaGTTTTCAGTGCGGGGTTTC +
Preference number: 4 (lower is better)
Translates to: SLCTHGPFPWHALERDTHFPTSW*FSVRGF
Trigger: GAAACCCCGCACTGAAAAGCACCAACTGGTTGGAAA...GTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACATAGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp CTCCTAGGTCACCTCGTCCACGTCATAATTCCTTATGCTGTTTGCTTACCCCATGCAAGGCAAAACCTTTaGTCAACAATTGCACAGAGC +
Preference number: 4 (lower is better)
Translates to: LLGHLVHVIIPYAVCLPHARQNL*STIAQS
Trigger: GCTCTGTGCAATTGTTGAGCAAAGGTTTTGCCTTGC...ATGGGGTAAGCAAACAGCATAAGGAATTATGACGTGGACGAGGTGACCTAGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp CTGAGGGAACAAACGGTGCTGACATGGCAGACATTTATTTCAATGGAGAAGTTCCTGTTCCTGTGGGTCTaGTTCCTTTGGCTAAGGCAA +
Preference number: 4 (lower is better)
Translates to: LREQTVLTWQTFISMEKFLFLWV*FLWLRQ
Trigger: TTGCCTTAGCCAAAGGAAGCAGACCCACAGGAACAG...GAACTTCTCCATTGAAATAAATGTCTGCCATGTCAGCACCGTTTGTTCCCTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCATCCGAGGAGATATTaGAGATCTTTGGTGGGACTT +
Preference number: 4 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSHPRRY*RSLVGL
Trigger: AAGTCCCACCAAAGATCTCCAATATCTCCTCGGATG...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CTCCTAGGTCACCTCGTCCACGTCATAATTCCTTATGCTGTTTGCTTACCCCATCATCCGAGGAGATATTaGAGATCTTTGGTGGGACTT +
Preference number: 4 (lower is better)
Translates to: LLGHLVHVIIPYAVCLPHHPRRY*RSLVGL
Trigger: AAGTCCCACCAAAGATCTCCAATATCTCCTCGGATG...ATGGGGTAAGCAAACAGCATAAGGAATTATGACGTGGACGAGGTGACCTAGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TGCTGCTCATTTTCACAGTGGAGCAGGGCCTACCCTGTTAAATGCCAGGAAATAAAATTCCCTTCCAGTTaGTGTAAGGTGTCTCCAGGT +
Preference number: 4 (lower is better)
Translates to: CCSFSQWSRAYPVKCQEIKFPSS*CKVSPG
Trigger: ACCTGGAGACACCTTACACCAACTGGAAGGGAATTT...TATTTCCTGGCATTTAACAGGGTAGGCCCTGCTCCACTGTGAAAATGAGCAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp AGTCTATGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACCTTGTCGTCCTGTGGTaGCTTCATTGCTCTTGGATT +
Preference number: 4 (lower is better)
Translates to: SLCTHGPFPWHALERDTHLVVLW*LHCSWI
Trigger: AATCCAAGAGCAATGAAGCCACCACAGGACGACAAG...GTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACATAGACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCAATTCTTAGCACCCTaGCATAGGATAACAGTGGAC +
Preference number: 4 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSQFLAP*HRITVD
Trigger: GTCCACTGTTATCCTATGCCAGGGTGCTAAGAATTG...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATCTTCAGGAAGCACCCTaGGTCAAAGTCATTTCTGTT +
Preference number: 4 (lower is better)
Translates to: LSLSLSLCLSLSVFCVTHLQEAP*VKVISV
Trigger: AACAGAAATGACTTTGACCCAGGGTGCTTCCTGAAG...ATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp GTAAAGCCCTGGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATTCTTGAACTGTTCCTGTaGGTCTGCTTCCTTTGGCTA +
Preference number: 4 (lower is better)
Translates to: VKPWIVLILQEAPWVKVILELFL*VCFLWL
Trigger: TAGCCAAAGGAAGCAGACCCACAGGAACAGTTCAAG...AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TGCTGCTCATTTTCACAGTGGAGCAGGGCCTACCCTGTTAAATGCCAGGAAATAGAAGATAGCTGGGAGTaGATACAGCAGACATATAGC +
Preference number: 4 (lower is better)
Translates to: CCSFSQWSRAYPVKCQEIEDSWE*IQQTYS
Trigger: GCTATATGTCTGCTGTATCCACTCCCAGCTATCTTC...TATTTCCTGGCATTTAACAGGGTAGGCCCTGCTCCACTGTGAAAATGAGCAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp CAAACAAGACTTTTTATCCAGCAAGGCAAAACCTTTGCTCAACAATTGCACAGACCGAGGCCTCACATTTaGGTGAAGCTTGTCGTCCTG +
Preference number: 4 (lower is better)
Translates to: QTRLFIQQGKTFAQQLHRPRPHI*VKLVVL
Trigger: CAGGACGACAAGCTTCACTCAAATGTGAGGCCTCGG...TCTGTGCAATTGTTGAGCAAAGGTTTTGCCTTGCTGGATAAAAAGTCTTGTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTTCTATTAACATTTGCTaGGAAGGCAGAGCAGAGATG +
Preference number: 4 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSSINIC*EGRAEM
Trigger: CATCTCTGCTCTGCCTTCTCAGCAAATGTTAATAGA...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp GACACTTGGGGGTTGATACAACAGGCACATGAGCCCTTAAAACTCCTTCCTGTTTCTATTAACATTTGCTaGGAAGGCAGAGCAGAGATG +
Preference number: 4 (lower is better)
Translates to: DTWGLIQQAHEPLKLLPVSINIC*EGRAEM
Trigger: CATCTCTGCTCTGCCTTCTCAGCAAATGTTAATAGA...AACAGGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATCAACCCCCAAGTGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TGCTGCTCATTTTCACAGTGGAGCAGGGCCTACCCTGTTAAATGCCAGGAAATAATTCCATTGATAGTCTaGAGTGGCTACAAGTCAGCT +
Preference number: 4 (lower is better)
Translates to: CCSFSQWSRAYPVKCQEIIPLIV*SGYKSA
Trigger: AGCTGACTTGTAGCCACTTCAGACTATCAATGGAAT...TATTTCCTGGCATTTAACAGGGTAGGCCCTGCTCCACTGTGAAAATGAGCAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp AATATGGCTCACCTTCCCTATATTTTACTAGCTACCTTCTTGGATGAGAATTTGCTAGCATTTGCGGCATaGCTAGTGCTCTGGGGAGGG +
Preference number: 4 (lower is better)
Translates to: NMAHLPYILLATFLDENLLAFAA*LVLWGG
Trigger: CCCTCCCCAGAGCACTAGTCATGCCGCAAATGCTAG...CAAATTCTCATCCAAGAAGGTAGCTAGTAAAATATAGGGAAGGTGAGCCATATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTTGCAAACACCATCAGTaGAACAGAACAGGGATTATG +
Preference number: 4 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSCKHHQ*NRTGIM
Trigger: CATAATCCCTGTTCTGTTTCACTGATGGTGTTTGCA...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp GGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTATGTTGAGATTCAATaGTTTCTTGGTGTCAGTCCT +
Preference number: 4 (lower is better)
Translates to: GLPHLSLSLSLCLSLSVFYVEIQ*FLGVSP
Trigger: AGGACTGACACCAAGAAATCATTGAATCTCAACATA...GAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp AGTCTATGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACAGTGACTGGAAACTCTaGTGCCTTCTGTTCTTTCAG +
Preference number: 4 (lower is better)
Translates to: SLCTHGPFPWHALERDTHSDWKL*CLLFFQ
Trigger: CTGAAAGAACAGAAGGCATCAGAGTTTCCAGTCACT...GTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACATAGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp CCCCCTTCATGTATAAACACACAAAGTTGTGAAATAAACGGTCTCCCCCATCTCAACCCTACTCTTCAGTaGCTGGAAACTCTGATGCCT +
Preference number: 4 (lower is better)
Translates to: PPSCINTQSCEINGLPHLNPTLQ*LETLMP
Trigger: AGGCATCAGAGTTTCCAGTCACTGAAGAGTAGGGTT...GAGATGGGGGAGACCGTTTATTTCACAACTTTGTGTGTTTATACATGAAGGGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp CTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTAACCCTACTCTTCAGTaGCTGGAAACTCTGATGCCT +
Preference number: 4 (lower is better)
Translates to: LSLSLCLSLSVFCVTHFCNPTLQ*LETLMP
Trigger: AGGCATCAGAGTTTCCAGTCACTGAAGAGTAGGGTT...ACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp AGGTTATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATATGGCTGTGTCCCCCTaGCTCACGGTGATGTTGTCC +
Preference number: 4 (lower is better)
Translates to: RLWKYKHQRQDLIFFPTDMAVSP*LTVMLS
Trigger: GGACAACATCACCGTGAGGCAGGGGGACACAGCCAT...ATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATAACCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000333617.8
ENST00000490035.7
CDS-3UTR GCA 90 bp CCCCCTTCATGTATAAACACACAAAGTTGTGAAATAAACGGTCTCCCCCATCTCCCTCGTTGGCAGCTTTaGACTCATATTTGCCTGACT +
Preference number: 4 (lower is better)
Translates to: PPSCINTQSCEINGLPHLPRWQL*THICLT
Trigger: AGTCAGGCAAATATGAGTGCAAAGCTGCCAACGAGG...GAGATGGGGGAGACCGTTTATTTCACAACTTTGTGTGTTTATACATGAAGGGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp TGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAAAACCACTCAAAGTCAGGTaGAGGCACTGCCGAGGCCTC +
Preference number: 4 (lower is better)
Translates to: WKYKHQRQDLIFFPTDEKPLKVR*RHCRGL
Trigger: GAGGCCTCGGCAGTGCCTGCACCTGACTTTGAGTGG...TTTTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp GTGACTGCCTCTTCAATTTTTGGGGAATGCTTATTATTAAAGATGATACCCTTTCCACTCAAAGTCAGGTaGAGGCACTGCCGAGGCCTC +
Preference number: 4 (lower is better)
Translates to: VTASSIFGECLLLKMIPFPLKVR*RHCRGL
Trigger: GAGGCCTCGGCAGTGCCTGCACCTGACTTTGAGTGG...AAAGGGTATCATCTTTAATAATAAGCATTCCCCAAAAATTGAAGAGGCAGTCAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp AATATGGCTCACCTTCCCTATATTTTACTAGCTACCTTCTTGGATGAGAATTTGGAGGACTCTGCTCCTTaGCTCTTTCCCCGCCATCTC +
Preference number: 4 (lower is better)
Translates to: NMAHLPYILLATFLDENLEDSAP*LFPRHL
Trigger: GAGATGGCGGGGAAAGAGGCAAGGAGCAGAGTCCTC...CAAATTCTCATCCAAGAAGGTAGCTAGTAAAATATAGGGAAGGTGAGCCATATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp CTGAGGGAACAAACGGTGCTGACATGGCAGACATTTATTTCAATGGAGAAGTTCACTGGGAAAAACATCTaGAGAGGAGCACAAGGAGTG +
Preference number: 4 (lower is better)
Translates to: LREQTVLTWQTFISMEKFTGKNI*RGAQGV
Trigger: CACTCCTTGTGCTCCTCTGCAGATGTTTTTCCCAGT...GAACTTCTCCATTGAAATAAATGTCTGCCATGTCAGCACCGTTTGTTCCCTCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTAAACTTGGGAGGTCTTaGGCTCATGCTGTGTCTGAA +
Preference number: 4 (lower is better)
Translates to: LSLSLCLSLSVFCVTHFCKLGRS*AHAVSE
Trigger: TTCAGACACAGCATGAGCCCAAGACCTCCCAAGTTT...ACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CCCCCTTCATGTATAAACACACAAAGTTGTGAAATAAACGGTCTCCCCCATCTCCTTGTCGTCCTGTGGTaGCTTCATTGCTCTTGGATT +
Preference number: 4 (lower is better)
Translates to: PPSCINTQSCEINGLPHLLVVLW*LHCSWI
Trigger: AATCCAAGAGCAATGAAGCCACCACAGGACGACAAG...GAGATGGGGGAGACCGTTTATTTCACAACTTTGTGTGTTTATACATGAAGGGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCAGATGTCCTTAGTGTaGTGTAGTCTTTACACAGCA +
Preference number: 4 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSQMSLV*CSLYTA
Trigger: TGCTGTGTAAAGACTACACCACACTAAGGACATCTG...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTGTGTGAGGGAGGAAAGGTaGGTGAAAAGGGAGTATCTA +
Preference number: 4 (lower is better)
Translates to: LSLSLSLSLCILCDAFLCVREER*VKREYL
Trigger: TAGATACTCCCTTTTCACCCACCTTTCCTCCCTCAC...ACACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATAATACAGTAGGAGCCTaGGCATCTGTTGACTTTTTC +
Preference number: 4 (lower is better)
Translates to: LSLSLSLCLSLSVFCVTHNTVGA*ASVDFF
Trigger: GAAAAAGTCAACAGATGCCCAGGCTCCTACTGTATT...ATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CTCCTAGGTCACCTCGTCCACGTCATAATTCCTTATGCTGTTTGCTTACCCCATGCAGTTGTAAAGCCCTaGATAGTTCTCATTCTTCAG +
Preference number: 4 (lower is better)
Translates to: LLGHLVHVIIPYAVCLPHAVVKP*IVLILQ
Trigger: CTGAAGAATGAGAACTATCCAGGGCTTTACAACTGC...ATGGGGTAAGCAAACAGCATAAGGAATTATGACGTGGACGAGGTGACCTAGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTCTTGAACTGTTCCTGTaGGTCTGCTTCCTTTGGCTA +
Preference number: 4 (lower is better)
Translates to: LSLSLCLSLSVFCVTHFCLELFL*VCFLWL
Trigger: TAGCCAAAGGAAGCAGACCCACAGGAACAGTTCAAG...ACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTGTCTATTTCCCTTGCTTTaGGGTCGGGTGAGACAACTA +
Preference number: 4 (lower is better)
Translates to: LSLSLSLSLCILCDAFLCLFPLL*GRVRQL
Trigger: TAGTTGTCTCACCCGACCCCAAAGCAAGGGAAATAG...ACACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp ATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACATTTGCTTAGTAGATATAGCCTTTGAACCTGCCTaGGACCCCATGCTTACCGCC +
Preference number: 4 (lower is better)
Translates to: MSLVWCSLYTAYICLVDIAFEPA*DPMLTA
Trigger: GGCGGTAAGCATGGGGTCCCAGGCAGGTTCAAAGGC...TATATCTACTAAGCAAATGTATGCTGTGTAAAGACTACACCACACTAAGGACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CAA 72 bp GGATCTCCAAGTGGTTCATCATTCTTTCACTGGGAGTaGACACTTGGAGACCTTCCTGTTTCTGGGGATTTA +
Preference number: 4 (lower is better)
Translates to: GSPSGSSFFHWE*TLGDLPVSGDL
Trigger: TAAATCCCCAGAAACAGGAAGGTCTCCAAGTGTCAACTCCCAGTGAAAGAATGATGAACCACTTGGAGATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CAA 72 bp ATGATGAGGAAGCAGTACCAAGAAGACACTTGGGGGTaGATACAACAGGCACATGAGCCCTTAAAACTCCTT +
Preference number: 4 (lower is better)
Translates to: MMRKQYQEDTWG*IQQAHEPLKLL
Trigger: AAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATCAACCCCCAAGTGTCTTCTTGGTACTGCTTCCTCATCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TGCTGCTCATTTTCACAGTGGAGCAGGGCCTACCCTGTTAAATGCCAGGAAATACAAGGGTTGGTTTTCTaGCAAAGACATCTATATGCA +
Preference number: 4 (lower is better)
Translates to: CCSFSQWSRAYPVKCQEIQGLVF*QRHLYA
Trigger: TGCATATAGATGTCTTTGTCAGAAAACCAACCCTTG...TATTTCCTGGCATTTAACAGGGTAGGCCCTGCTCCACTGTGAAAATGAGCAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp GACACTTGGGGGTTGATACAACAGGCACATGAGCCCTTAAAACTCCTTCCTGTTACACACTTAAGTGTGTaGCTGCCTCTTCAATTTTTG +
Preference number: 4 (lower is better)
Translates to: DTWGLIQQAHEPLKLLPVTHLSV*LPLQFL
Trigger: CAAAAATTGAAGAGGCAGTCACACACTTAAGTGTGT...AACAGGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATCAACCCCCAAGTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp AGTCTATGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACCGGGGTTTCAAACTTTaGTTACCAAGGGACAAGATT +
Preference number: 4 (lower is better)
Translates to: SLCTHGPFPWHALERDTHRGFKL*LPRDKI
Trigger: AATCTTGTCCCTTGGTAATCAAAGTTTGAAACCCCG...GTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACATAGACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp GTAAAGCCCTGGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATTGGTCCTCCAAGAACGTaGAAATCACGAGTACTTTTA +
Preference number: 4 (lower is better)
Translates to: VKPWIVLILQEAPWVKVIGPPRT*KSRVLL
Trigger: TAAAAGTACTCGTGATTTTCACGTTCTTGGAGGACC...AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp GACACTTGGGGGTTGATACAACAGGCACATGAGCCCTTAAAACTCCTTCCTGTTAGTTATTTCCTAGGGTaGCTCAGCAAGATATTTCTC +
Preference number: 4 (lower is better)
Translates to: DTWGLIQQAHEPLKLLPVSYFLG*LSKIFL
Trigger: GAGAAATATCTTGCTGAGTCACCCTAGGAAATAACT...AACAGGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATCAACCCCCAAGTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp GACACTTGGGGGTTGATACAACAGGCACATGAGCCCTTAAAACTCCTTCCTGTTGTCCTTAGTGTAATTTaGATGTGTCCCTTCTCTACA +
Preference number: 4 (lower is better)
Translates to: DTWGLIQQAHEPLKLLPVVLSVI*MCPFST
Trigger: TGTAGAGAAGGGACACATTCAAATTACACTAAGGAC...AACAGGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATCAACCCCCAAGTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp CTCCTAGGTCACCTCGTCCACGTCATAATTCCTTATGCTGTTTGCTTACCCCATGATTTACTCAACACATaGTGCTCATTTTCACAGTGG +
Preference number: 4 (lower is better)
Translates to: LLGHLVHVIIPYAVCLPHDLLNT*CSFSQW
Trigger: CCACTGTGAAAATGAGCAGCATGTGTTGAGTAAATC...ATGGGGTAAGCAAACAGCATAAGGAATTATGACGTGGACGAGGTGACCTAGGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp GTAAAGCCCTGGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATTATAGGAAACAATCTCTaGTCAGGGGAATTCATGGGA +
Preference number: 4 (lower is better)
Translates to: VKPWIVLILQEAPWVKVIIGNNL*SGEFMG
Trigger: TCCCATGAATTCCCCTGAGCAGAGATTGTTTCCTAT...AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp GAAACCACAACCAACTCAGGGATGGAATCTGCGACTCTGGAGGATTCAAGAAGCACAGAACAGGGATTATaGAGGCAACCAAATAAAACA +
Preference number: 4 (lower is better)
Translates to: ETTTNSGMESATLEDSRSTEQGL*RQPNKT
Trigger: TGTTTTATTTGGTTGCCTGCATAATCCCTGTTCTGT...GCTTCTTGAATCCTCCAGAGTCGCAGATTCCATCCCTGAGTTGGTTGTGGTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp ATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGAGAGAAAACCCATCTaGTTTTCTATAAGCCTTAGT +
Preference number: 4 (lower is better)
Translates to: INGLPHLSLSLSLCLSLSERKPI*FSISLS
Trigger: ACTAAGGCTTATAGAAAAGCAGATGGGTTTTCTCTC...AGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp ATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTCCCTTCTCTACACTaGTATAAAGTTTTGATCAGA +
Preference number: 4 (lower is better)
Translates to: INGLPHLSLSLSLCLSLSVPSLH*YKVLIR
Trigger: TCTGATCAAAACTTTATAGCAGTGTAGAGAAGGGAC...AGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp GTGACTGCCTCTTCAATTTTTGGGGAATGCTTATTATTAAAGATGATACCCTTTCTGCCTGGGACCCCATaGTTACCGCCATCAGCACAA +
Preference number: 4 (lower is better)
Translates to: VTASSIFGECLLLKMIPFLPGTP*LPPSAQ
Trigger: TTGTGCTGATGGCGGTAAGCATGGGGTCCCAGGCAG...AAAGGGTATCATCTTTAATAATAAGCATTCCCCAAAAATTGAAGAGGCAGTCAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp AGTCTATGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACAGCATATTTGTACTGTaGCTGGCTTTACATAGGGAG +
Preference number: 4 (lower is better)
Translates to: SLCTHGPFPWHALERDTHSIFVL*LALHRE
Trigger: CTCCCTATGTAAAGCCAGGCACAGTACAAATATGCT...GTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACATAGACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp GTAAAGCCCTGGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATTAGCATATTTGTACTGTaGCTGGCTTTACATAGGGAG +
Preference number: 4 (lower is better)
Translates to: VKPWIVLILQEAPWVKVISIFVL*LALHRE
Trigger: CTCCCTATGTAAAGCCAGGCACAGTACAAATATGCT...AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTAAATTCCCTTCCAGTTaGTGTAAGGTGTCTCCAGGT +
Preference number: 4 (lower is better)
Translates to: LSLSLCLSLSVFCVTHFCKFPSS*CKVSPG
Trigger: ACCTGGAGACACCTTACACCAACTGGAAGGGAATTT...ACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTGTAAATTCCCTTCCAGTTaGTGTAAGGTGTCTCCAGGT +
Preference number: 4 (lower is better)
Translates to: LSLSLSLSLCILCDAFLCKFPSS*CKVSPG
Trigger: ACCTGGAGACACCTTACACCAACTGGAAGGGAATTT...ACACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAAAATGCCAGCAGCCACAGTaGTACGGCCAGACTGATGGA +
Preference number: 4 (lower is better)
Translates to: WKYKHQRQDLIFFPTDEKCQQPQ*YGQTDG
Trigger: TCCATCAGTCTGGCCGTACCACTGTGGCTGCTGGCA...TTTTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAATGCCAGCAGCCACAGTaGTACGGCCAGACTGATGGA +
Preference number: 4 (lower is better)
Translates to: YGNINTKGKTLFSSPQMKCQQPQ*YGQTDG
Trigger: TCCATCAGTCTGGCCGTACCACTGTGGCTGCTGGCA...TTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTGAAAGGGTTCTTGTTTaGTCTCTCTGTGACTGGATG +
Preference number: 4 (lower is better)
Translates to: LSLSLCLSLSVFCVTHFCERVLV*SLCDWM
Trigger: CATCCAGTCACAGAGAGACCAAACAAGAACCCTTTC...ACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000490035.7
CDS-3UTR CCA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCAAACGGTGCTGACATaGCAGACATTTATTTCAATG +
Preference number: 4 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSQTVLT*QTFISM
Trigger: CATTGAAATAAATGTCTGCCATGTCAGCACCGTTTG...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CAAACAAGACTTTTTATCCAGCAAGGCAAAACCTTTGCTCAACAATTGCACAGATTGGTGTCAGTCCTCTaGCCCTACCTTTCCCTGACT +
Preference number: 4 (lower is better)
Translates to: QTRLFIQQGKTFAQQLHRLVSVL*PYLSLT
Trigger: AGTCAGGGAAAGGTAGGGCCAGAGGACTGACACCAA...TCTGTGCAATTGTTGAGCAAAGGTTTTGCCTTGCTGGATAAAAAGTCTTGTTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CCCCCTTCATGTATAAACACACAAAGTTGTGAAATAAACGGTCTCCCCCATCTCGATTCAATGATTTCTTaGTGTCAGTCCTCTGGCCCT +
Preference number: 4 (lower is better)
Translates to: PPSCINTQSCEINGLPHLDSMIS*CQSSGP
Trigger: AGGGCCAGAGGACTGACACCAAGAAATCATTGAATC...GAGATGGGGGAGACCGTTTATTTCACAACTTTGTGTGTTTATACATGAAGGGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTTTATTTCCAACCAGTTaGTGCTTTTCAGTGCGGGGT +
Preference number: 4 (lower is better)
Translates to: LSLSLCLSLSVFCVTHFCLFPTS*CFSVRG
Trigger: ACCCCGCACTGAAAAGCACCAACTGGTTGGAAATAA...ACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CTGAGGGAACAAACGGTGCTGACATGGCAGACATTTATTTCAATGGAGAAGTTCTTATTTCCAACCAGTTaGTGCTTTTCAGTGCGGGGT +
Preference number: 4 (lower is better)
Translates to: LREQTVLTWQTFISMEKFLFPTS*CFSVRG
Trigger: ACCCCGCACTGAAAAGCACCAACTGGTTGGAAATAA...GAACTTCTCCATTGAAATAAATGTCTGCCATGTCAGCACCGTTTGTTCCCTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CTGAGGGAACAAACGGTGCTGACATGGCAGACATTTATTTCAATGGAGAAGTTCGAAGATAGCTGGGAGTaGATACAGCAGACATATAGC +
Preference number: 4 (lower is better)
Translates to: LREQTVLTWQTFISMEKFEDSWE*IQQTYS
Trigger: GCTATATGTCTGCTGTATCCACTCCCAGCTATCTTC...GAACTTCTCCATTGAAATAAATGTCTGCCATGTCAGCACCGTTTGTTCCCTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTTACCAAGAAGACACTTaGGGGTTGATACAACAGGCA +
Preference number: 4 (lower is better)
Translates to: LSLSLCLSLSVFCVTHFCYQEDT*GLIQQA
Trigger: TGCCTGTTGTATCAACCCCCAAGTGTCTTCTTGGTA...ACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp ATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACATTTGCTTAGTAGATATAAGGCTCCTGGTAGCTTaGGATTGCTGCAGCGTGCCA +
Preference number: 4 (lower is better)
Translates to: MSLVWCSLYTAYICLVDIRLLVA*DCCSVP
Trigger: TGGCACGCTGCAGCAATCCCAAGCTACCAGGAGCCT...TATATCTACTAAGCAAATGTATGCTGTGTAAAGACTACACCACACTAAGGACAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CAA 72 bp AGGTCACCTCGTCCACGTCATAATTCCTTATGCTGTTaGCTTACCCCATCGATAGTAGGCACTTTCATTTAC +
Preference number: 4 (lower is better)
Translates to: RSPRPRHNSLCC*LTPSIVGTFIY
Trigger: GTAAATGAAAGTGCCTACTATCGATGGGGTAAGCAAACAGCATAAGGAATTATGACGTGGACGAGGTGACCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CAA 72 bp TGCCATGAAGCTAGGACTTCCATGGGTTTTCTTCACTaGCAAGAAGCATATTTGTACTGTGCCTGGCTTTAC +
Preference number: 4 (lower is better)
Translates to: CHEARTSMGFLH*QEAYLYCAWLY
Trigger: GTAAAGCCAGGCACAGTACAAATATGCTTCTTGCAAGTGAAGAAAACCCATGGAAGTCCTAGCTTCATGGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAACTGACTGCTCCCTGGTaGTGCCAAGGATCTCCAGAT +
Preference number: 4 (lower is better)
Translates to: YGNINTKGKTLFSSPQMKLTAPW*CQGSPD
Trigger: ATCTGGAGATCCTTGGCATCACCAGGGAGCAGTCAG...TTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TGCGGGGTTTCAAACTTTGATTACCAAGGGACAAGATTCTTGAAGGAATTTATTGGCCTCACATTTGAGTaGAGCTTGTCGTCCTGTGGT +
Preference number: 4 (lower is better)
Translates to: CGVSNFDYQGTRFLKEFIGLTFE*SLSSCG
Trigger: ACCACAGGACGACAAGCTTCACTCAAATGTGAGGCC...AATAAATTCCTTCAAGAATCTTGTCCCTTGGTAATCAAAGTTTGAAACCCCGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp AGGTTATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGGCCTCACATTTGAGTaGAGCTTGTCGTCCTGTGGT +
Preference number: 4 (lower is better)
Translates to: RLWKYKHQRQDLIFFPTDGLTFE*SLSSCG
Trigger: ACCACAGGACGACAAGCTTCACTCAAATGTGAGGCC...ATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATAACCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp ATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACATTTGCTTAGTAGATATACCGAGGCCTCACATTTaGGTGAAGCTTGTCGTCCTG +
Preference number: 4 (lower is better)
Translates to: MSLVWCSLYTAYICLVDIPRPHI*VKLVVL
Trigger: CAGGACGACAAGCTTCACTCAAATGTGAGGCCTCGG...TATATCTACTAAGCAAATGTATGCTGTGTAAAGACTACACCACACTAAGGACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp CTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTGTAAACACACAAAGTTGTaGAATAAACGGTCTCCCCCA +
Preference number: 4 (lower is better)
Translates to: LSLSLSLSLCILCDAFLCKHTKL*NKRSPP
Trigger: TGGGGGAGACCGTTTATTTCACAACTTTGTGTGTTT...ACACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TGCGGGGTTTCAAACTTTGATTACCAAGGGACAAGATTCTTGAAGGAATTTATTGCCCTCTGGAAGAGCTaGAGAGGAAGCCAAAGGAAA +
Preference number: 4 (lower is better)
Translates to: CGVSNFDYQGTRFLKEFIALWKS*RGSQRK
Trigger: TTTCCTTTGGCTTCCTCTTCAGCTCTTCCAGAGGGC...AATAAATTCCTTCAAGAATCTTGTCCCTTGGTAATCAAAGTTTGAAACCCCGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490035.7
CDS-3UTR TCA 90 bp CTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTACCCAAGCAGAAGGGTaGAAAGTAAAAGCAACACAA +
Preference number: 4 (lower is better)
Translates to: LSLSLCLSLSVFCVTHFCTQAEG*KVKATQ
Trigger: TTGTGTTGCTTTTACTTTTCACCCTTCTGCTTGGGT...ACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000490035.7
CDS-3UTR TCA 90 bp CCCCCTTCATGTATAAACACACAAAGTTGTGAAATAAACGGTCTCCCCCATCTCGTATCTACAGCACAATaGGTCTATGTACACATGGAC +
Preference number: 4 (lower is better)
Translates to: PPSCINTQSCEINGLPHLVSTAQ*VYVHMD
Trigger: GTCCATGTGTACATAGACTCATTGTGCTGTAGATAC...GAGATGGGGGAGACCGTTTATTTCACAACTTTGTGTGTTTATACATGAAGGGGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp CTCCTAGGTCACCTCGTCCACGTCATAATTCCTTATGCTGTTTGCTTACCCCATTATGTTGAGATTCAATaGTTTCTTGGTGTCAGTCCT +
Preference number: 4 (lower is better)
Translates to: LLGHLVHVIIPYAVCLPHYVEIQ*FLGVSP
Trigger: AGGACTGACACCAAGAAATCATTGAATCTCAACATA...ATGGGGTAAGCAAACAGCATAAGGAATTATGACGTGGACGAGGTGACCTAGGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp CTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTGTGGTCCTCCAAGAACGTaGAAATCACGAGTACTTTTA +
Preference number: 4 (lower is better)
Translates to: LSLSLSLSLCILCDAFLCGPPRT*KSRVLL
Trigger: TAAAAGTACTCGTGATTTTCACGTTCTTGGAGGACC...ACACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp AGTCTATGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACGAAAATTTACATCACTaGGGCAAATGCAGTCTTTGG +
Preference number: 4 (lower is better)
Translates to: SLCTHGPFPWHALERDTHENLHH*GKCSLW
Trigger: CCAAAGACTGCATTTGCCTCAGTGATGTAAATTTTC...GTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACATAGACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp AATATGGCTCACCTTCCCTATATTTTACTAGCTACCTTCTTGGATGAGAATTTGTGCTTTGGGGTCGGGTaGGACAACTACAGCAACAGT +
Preference number: 4 (lower is better)
Translates to: NMAHLPYILLATFLDENLCFGVG*DNYSNS
Trigger: ACTGTTGCTGTAGTTGTCTCACCCGACCCCAAAGCA...CAAATTCTCATCCAAGAAGGTAGCTAGTAAAATATAGGGAAGGTGAGCCATATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp AGTCTATGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACAGTTATTTCCTAGGGTaGCTCAGCAAGATATTTCTC +
Preference number: 4 (lower is better)
Translates to: SLCTHGPFPWHALERDTHSYFLG*LSKIFL
Trigger: GAGAAATATCTTGCTGAGTCACCCTAGGAAATAACT...GTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACATAGACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp CTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTCTCAGGAAAGTTAAATaGCTTGCCAATGTCTCACAG +
Preference number: 4 (lower is better)
Translates to: LSLSLCLSLSVFCVTHFCLRKVK*LANVSQ
Trigger: CTGTGAGACATTGGCAAGTCATTTAACTTTCCTGAG...ACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TTTTGGTTGGCGACATTTGAACAGCATAGCTACATGCAAATGAGAATAGTTTACTTACAGTTCAGCCTTTaGACCTGCCTGGGACCCCAT +
Preference number: 4 (lower is better)
Translates to: FWLATFEQHSYMQMRIVYLQFSL*TCLGPH
Trigger: ATGGGGTCCCAGGCAGGTTCAAAGGCTGAACTGTAA...GTAAACTATTCTCATTTGCATGTAGCTATGCTGTTCAAATGTCGCCAACCAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp GTAAAGCCCTGGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATTGGGAAACTTATCCCATaGGAAATTCCTTCCAAAACA +
Preference number: 4 (lower is better)
Translates to: VKPWIVLILQEAPWVKVIGKLIP*EIPSKT
Trigger: TGTTTTGGAAGGAATTTCTCATGGGATAAGTTTCCC...AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp CTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATACAGAACAGGGATTATaGAGGCAACCAAATAAAACA +
Preference number: 4 (lower is better)
Translates to: LSLSLSLCLSLSVFCVTHTEQGL*RQPNKT
Trigger: TGTTTTATTTGGTTGCCTGCATAATCCCTGTTCTGT...ATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTAGTTTAGCTTTTGTGTaGAAAGGAGGTAAGTCCATT +
Preference number: 4 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSSLAFV*KGGKSI
Trigger: AATGGACTTACCTCCTTTGCACACAAAAGCTAAACT...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTGTCCCTTCTCTACACTaGTATAAAGTTTTGATCAGA +
Preference number: 4 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSVPSLH*YKVLIR
Trigger: TCTGATCAAAACTTTATAGCAGTGTAGAGAAGGGAC...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp GTAAAGCCCTGGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATTGATATTGGAGATCTTTaGTGGGACTTGTACGATCAA +
Preference number: 4 (lower is better)
Translates to: VKPWIVLILQEAPWVKVIDIGDL*WDLYDQ
Trigger: TTGATCGTACAAGTCCCACCAAAGATCTCCAATATC...AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAAAAGTTCAGGACGGCCATTaGCCATGCAGACCAGAGTCA +
Preference number: 4 (lower is better)
Translates to: WKYKHQRQDLIFFPTDEKVQDGH*PCRPES
Trigger: TGACTCTGGTCTGCATGGCCAATGGCCGTCCTGAAC...TTTTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TATTTTTACAGCATCCAGATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACCCGAGGAGACCTCGTTaGCAGCTTTGCACTCATATT +
Preference number: 4 (lower is better)
Translates to: YFYSIQMSLVWCSLYTAYPRRPR*QLCTHI
Trigger: AATATGAGTGCAAAGCTGCCAACGAGGTCTCCTCGG...GTATGCTGTGTAAAGACTACACCACACTAAGGACATCTGGATGCTGTAAAAATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAAAAACCGTCAGGGAAGACTaGCCCTCCGTGCTCTTAATC +
Preference number: 4 (lower is better)
Translates to: WKYKHQRQDLIFFPTDEKTVRED*PSVLLI
Trigger: GATTAAGAGCACGGAGGGCCAGTCTTCCCTGACGGT...TTTTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCA
43% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAAACCGTCAGGGAAGACTaGCCCTCCGTGCTCTTAATC +
Preference number: 4 (lower is better)
Translates to: YGNINTKGKTLFSSPQMKTVRED*PSVLLI
Trigger: GATTAAGAGCACGGAGGGCCAGTCTTCCCTGACGGT...TTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp GTGACTGCCTCTTCAATTTTTGGGGAATGCTTATTATTAAAGATGATACCCTTTACCGTCAGGGAAGACTaGCCCTCCGTGCTCTTAATC +
Preference number: 4 (lower is better)
Translates to: VTASSIFGECLLLKMIPFTVRED*PSVLLI
Trigger: GATTAAGAGCACGGAGGGCCAGTCTTCCCTGACGGT...AAAGGGTATCATCTTTAATAATAAGCATTCCCCAAAAATTGAAGAGGCAGTCAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CTGAGGGAACAAACGGTGCTGACATGGCAGACATTTATTTCAATGGAGAAGTTCCAGATGTCCTTAGTGTaGTGTAGTCTTTACACAGCA +
Preference number: 4 (lower is better)
Translates to: LREQTVLTWQTFISMEKFQMSLV*CSLYTA
Trigger: TGCTGTGTAAAGACTACACCACACTAAGGACATCTG...GAACTTCTCCATTGAAATAAATGTCTGCCATGTCAGCACCGTTTGTTCCCTCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTATTGATAGTCTGAAGTaGCTACAAGTCAGCTCAAAT +
Preference number: 4 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSIDSLK*LQVSSN
Trigger: ATTTGAGCTGACTTGTAGCCACTTCAGACTATCAAT...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TGCTGCTCATTTTCACAGTGGAGCAGGGCCTACCCTGTTAAATGCCAGGAAATAATTGATAGTCTGAAGTaGCTACAAGTCAGCTCAAAT +
Preference number: 4 (lower is better)
Translates to: CCSFSQWSRAYPVKCQEIIDSLK*LQVSSN
Trigger: ATTTGAGCTGACTTGTAGCCACTTCAGACTATCAAT...TATTTCCTGGCATTTAACAGGGTAGGCCCTGCTCCACTGTGAAAATGAGCAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp ATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACATTTGCTTAGTAGATATAGGACTAGGAGGAATATaGGGTCCTGCCCTTGGAAGG +
Preference number: 4 (lower is better)
Translates to: MSLVWCSLYTAYICLVDIGLGGI*GPALGR
Trigger: CCTTCCAAGGGCAGGACCCCATATTCCTCCTAGTCC...TATATCTACTAAGCAAATGTATGCTGTGTAAAGACTACACCACACTAAGGACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CAAACAAGACTTTTTATCCAGCAAGGCAAAACCTTTGCTCAACAATTGCACAGACTGGGAGTTGACACTTaGAGACCTTCCTGTTTCTGG +
Preference number: 4 (lower is better)
Translates to: QTRLFIQQGKTFAQQLHRLGVDT*RPSCFW
Trigger: CCAGAAACAGGAAGGTCTCCAAGTGTCAACTCCCAG...TCTGTGCAATTGTTGAGCAAAGGTTTTGCCTTGCTGGATAAAAAGTCTTGTTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CTGAGGGAACAAACGGTGCTGACATGGCAGACATTTATTTCAATGGAGAAGTTCAATACAGTAGGAGCCTaGGCATCTGTTGACTTTTTC +
Preference number: 4 (lower is better)
Translates to: LREQTVLTWQTFISMEKFNTVGA*ASVDFF
Trigger: GAAAAAGTCAACAGATGCCCAGGCTCCTACTGTATT...GAACTTCTCCATTGAAATAAATGTCTGCCATGTCAGCACCGTTTGTTCCCTCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp ATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTATGACATACCATATTTaGCTCTGCAAGATTACATTC +
Preference number: 4 (lower is better)
Translates to: INGLPHLSLSLSLCLSLSMTYHI*LCKITF
Trigger: GAATGTAATCTTGCAGAGCCAAATATGGTATGTCAT...AGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp AGTCTATGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACTGCTGCATAGGAATATaGCTCACCTTCCCTATATTT +
Preference number: 4 (lower is better)
Translates to: SLCTHGPFPWHALERDTHCCIGI*LTFPIF
Trigger: AAATATAGGGAAGGTGAGCCATATTCCTATGCAGCA...GTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACATAGACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp GAAACCACAACCAACTCAGGGATGGAATCTGCGACTCTGGAGGATTCAAGAAGCTTCTTTCCTAAATTTTaGTTGGCGACATTTGAACAG +
Preference number: 4 (lower is better)
Translates to: ETTTNSGMESATLEDSRSFFPKF*LATFEQ
Trigger: CTGTTCAAATGTCGCCAACCAAAATTTAGGAAAGAA...GCTTCTTGAATCCTCCAGAGTCGCAGATTCCATCCCTGAGTTGGTTGTGGTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp GTAAAGCCCTGGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATTAACTACAGCAACAGTTaGGACAATCTCCACTTAGAT +
Preference number: 4 (lower is better)
Translates to: VKPWIVLILQEAPWVKVINYSNS*DNLHLD
Trigger: ATCTAAGTGGAGATTGTCCCAACTGTTGCTGTAGTT...AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp AGTCTATGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACTCACAGCTTTATTTGTaGCTGAACTTGGGGTTAGAA +
Preference number: 4 (lower is better)
Translates to: SLCTHGPFPWHALERDTHSQLYL*LNLGLE
Trigger: TTCTAACCCCAAGTTCAGCCACAAATAAAGCTGTGA...GTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACATAGACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp GTAAAGCCCTGGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATTTATTTGTACTGTGCCTaGCTTTACATAGGGAGGATT +
Preference number: 4 (lower is better)
Translates to: VKPWIVLILQEAPWVKVIYLYCA*LYIGRI
Trigger: AATCCTCCCTATGTAAAGCCAGGCACAGTACAAATA...AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CAA 72 bp ACTTCCATGGGTTTTCTTCACTTGCAAGAAGCATATTaGTACTGTGCCTGGCTTTACATAGGGAGGATTGTG +
Preference number: 4 (lower is better)
Translates to: TSMGFLHLQEAY*YCAWLYIGRIV
Trigger: CACAATCCTCCCTATGTAAAGCCAGGCACAGTACAAATATGCTTCTTGCAAGTGAAGAAAACCCATGGAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TATTTTTACAGCATCCAGATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACCATGTCCAGCAAAAATaGTGCCAGAACGGTTCAACC +
Preference number: 4 (lower is better)
Translates to: YFYSIQMSLVWCSLYTAYHVQQK*CQNGST
Trigger: GGTTGAACCGTTCTGGCATCATTTTTGCTGGACATG...GTATGCTGTGTAAAGACTACACCACACTAAGGACATCTGGATGCTGTAAAAATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp ATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACATTTGCTTAGTAGATATAGGCCTCACATTTGAGTaGAGCTTGTCGTCCTGTGGT +
Preference number: 4 (lower is better)
Translates to: MSLVWCSLYTAYICLVDIGLTFE*SLSSCG
Trigger: ACCACAGGACGACAAGCTTCACTCAAATGTGAGGCC...TATATCTACTAAGCAAATGTATGCTGTGTAAAGACTACACCACACTAAGGACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TGCGGGGTTTCAAACTTTGATTACCAAGGGACAAGATTCTTGAAGGAATTTATTGTGGTACGGCCAGACTaGTGGATCCATTTATTCCTC +
Preference number: 4 (lower is better)
Translates to: CGVSNFDYQGTRFLKEFIVVRPD*WIHLFL
Trigger: GAGGAATAAATGGATCCATCAGTCTGGCCGTACCAC...AATAAATTCCTTCAAGAATCTTGTCCCTTGGTAATCAAAGTTTGAAACCCCGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp AGTCTATGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACGATACCCTTTATTCTTaGACTAAGAAGACCAAACTG +
Preference number: 4 (lower is better)
Translates to: SLCTHGPFPWHALERDTHDTLYS*TKKTKL
Trigger: CAGTTTGGTCTTCTTAGTTCAAGAATAAAGGGTATC...GTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACATAGACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp CTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTACACACTTAAGTGTGTaGCTGCCTCTTCAATTTTTG +
Preference number: 4 (lower is better)
Translates to: LSLSLCLSLSVFCVTHFCTHLSV*LPLQFL
Trigger: CAAAAATTGAAGAGGCAGTCACACACTTAAGTGTGT...ACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp CTGAGGGAACAAACGGTGCTGACATGGCAGACATTTATTTCAATGGAGAAGTTCGAAAATTTACATCACTaGGGCAAATGCAGTCTTTGG +
Preference number: 4 (lower is better)
Translates to: LREQTVLTWQTFISMEKFENLHH*GKCSLW
Trigger: CCAAAGACTGCATTTGCCTCAGTGATGTAAATTTTC...GAACTTCTCCATTGAAATAAATGTCTGCCATGTCAGCACCGTTTGTTCCCTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAAAATGCTTTGGGGTCGGGTaGGACAACTACAGCAACAGT +
Preference number: 4 (lower is better)
Translates to: WKYKHQRQDLIFFPTDEKCFGVG*DNYSNS
Trigger: ACTGTTGCTGTAGTTGTCTCACCCGACCCCAAAGCA...TTTTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp CCCCCTTCATGTATAAACACACAAAGTTGTGAAATAAACGGTCTCCCCCATCTCAAAAAGAGGTACTTCTaGAATGACCATGAAAACGGG +
Preference number: 4 (lower is better)
Translates to: PPSCINTQSCEINGLPHLKKRYF*NDHENG
Trigger: CCCGTTTTCATGGTCATTTCAGAAGTACCTCTTTTT...GAGATGGGGGAGACCGTTTATTTCACAACTTTGTGTGTTTATACATGAAGGGGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp AGGTTATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATTCATATTTGCCTGACTaGTCCCTGGTGATGCCAAGG +
Preference number: 4 (lower is better)
Translates to: RLWKYKHQRQDLIFFPTDSYLPD*SLVMPR
Trigger: CCTTGGCATCACCAGGGAGCAGTCAGGCAAATATGA...ATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATAACCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp CTGAGGGAACAAACGGTGCTGACATGGCAGACATTTATTTCAATGGAGAAGTTCTCTGTTGACTTTTTCTaGCTTGCTCACTTTCACTGT +
Preference number: 4 (lower is better)
Translates to: LREQTVLTWQTFISMEKFSVDFF*LAHFHC
Trigger: ACAGTGAAAGTGAGCAAGGCAGAAAAAGTCAACAGA...GAACTTCTCCATTGAAATAAATGTCTGCCATGTCAGCACCGTTTGTTCCCTCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp CTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATCCTTTGCTCAACAATTaGACAGAGCATAATTACAAT +
Preference number: 4 (lower is better)
Translates to: LSLSLSLCLSLSVFCVTHPLLNN*TEHNYN
Trigger: ATTGTAATTATGCTCTGTGCAATTGTTGAGCAAAGG...ATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp ATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACATTTGCTTAGTAGATATAGAACAGGCAGTCCTGTaGGAAGAAGGCAGAGCAATC +
Preference number: 4 (lower is better)
Translates to: MSLVWCSLYTAYICLVDIEQAVL*EEGRAI
Trigger: GATTGCTCTGCCTTCTTCCCACAGGACTGCCTGTTC...TATATCTACTAAGCAAATGTATGCTGTGTAAAGACTACACCACACTAAGGACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333617.8
ENST00000490035.7
CDS-3UTR CCA 90 bp CCCCCTTCATGTATAAACACACAAAGTTGTGAAATAAACGGTCTCCCCCATCTCATTGGAGATCTTTGGTaGGACTTGTACGATCAAGTA +
Preference number: 4 (lower is better)
Translates to: PPSCINTQSCEINGLPHLIGDLW*DLYDQV
Trigger: TACTTGATCGTACAAGTCCCACCAAAGATCTCCAAT...GAGATGGGGGAGACCGTTTATTTCACAACTTTGTGTGTTTATACATGAAGGGGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp AGGTTATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATCCGAGGAGACCTCGTTaGCAGCTTTGCACTCATATT +
Preference number: 4 (lower is better)
Translates to: RLWKYKHQRQDLIFFPTDPRRPR*QLCTHI
Trigger: AATATGAGTGCAAAGCTGCCAACGAGGTCTCCTCGG...ATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATAACCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TGCGGGGTTTCAAACTTTGATTACCAAGGGACAAGATTCTTGAAGGAATTTATTGACCACCATGAACAGTaGTGCTGCAAACACCATCAG +
Preference number: 4 (lower is better)
Translates to: CGVSNFDYQGTRFLKEFIDHHEQ*CCKHHQ
Trigger: CTGATGGTGTTTGCAGCACCACTGTTCATGGTGGTC...AATAAATTCCTTCAAGAATCTTGTCCCTTGGTAATCAAAGTTTGAAACCCCGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTAGACATTTATTTCAATaGAGAAGTTCCTCCCATGAA +
Preference number: 4 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSRHLFQ*RSSSHE
Trigger: TTCATGGGAGGAACTTCTCCATTGAAATAAATGTCT...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTAAACAGATTTTTGTTTaGTCCTCCAAGAACGTGAAA +
Preference number: 4 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSKQIFV*SSKNVK
Trigger: TTTCACGTTCTTGGAGGACCAAACAAAAATCTGTTT...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CCCCCTTCATGTATAAACACACAAAGTTGTGAAATAAACGGTCTCCCCCATCTCATCAAAGGACAACTTTaGATAGATGCTAACCTGAGC +
Preference number: 4 (lower is better)
Translates to: PPSCINTQSCEINGLPHLIKGQL*IDANLS
Trigger: GCTCAGGTTAGCATCTATCCAAAGTTGTCCTTTGAT...GAGATGGGGGAGACCGTTTATTTCACAACTTTGTGTGTTTATACATGAAGGGGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CTGAGGGAACAAACGGTGCTGACATGGCAGACATTTATTTCAATGGAGAAGTTCTATTTGTACTGTGCCTaGCTTTACATAGGGAGGATT +
Preference number: 4 (lower is better)
Translates to: LREQTVLTWQTFISMEKFYLYCA*LYIGRI
Trigger: AATCCTCCCTATGTAAAGCCAGGCACAGTACAAATA...GAACTTCTCCATTGAAATAAATGTCTGCCATGTCAGCACCGTTTGTTCCCTCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp AATATGGCTCACCTTCCCTATATTTTACTAGCTACCTTCTTGGATGAGAATTTGTTAGGGAGCAGAACTTaGCCACAGTTCACCAGGATG +
Preference number: 4 (lower is better)
Translates to: NMAHLPYILLATFLDENLLGSRT*PQFTRM
Trigger: CATCCTGGTGAACTGTGGCCAAGTTCTGCTCCCTAA...CAAATTCTCATCCAAGAAGGTAGCTAGTAAAATATAGGGAAGGTGAGCCATATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp ATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACATTTGCTTAGTAGATATAATGCTGTGTCTGAACTaGGCAAGTGTAGGAACCCTC +
Preference number: 4 (lower is better)
Translates to: MSLVWCSLYTAYICLVDIMLCLN*ASVGTL
Trigger: GAGGGTTCCTACACTTGCTCAGTTCAGACACAGCAT...TATATCTACTAAGCAAATGTATGCTGTGTAAAGACTACACCACACTAAGGACAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAAAATGGAGGGAGAGGGGATaGTCTCTAAAGTTGGAGAGA +
Preference number: 4 (lower is better)
Translates to: WKYKHQRQDLIFFPTDEKWRERG*SLKLER
Trigger: TCTCTCCAACTTTAGAGATCATCCCCTCTCCCTCCA...TTTTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAAAAGACACTTGGGGGTTaGTACAACAGGCACATGAGC +
Preference number: 4 (lower is better)
Translates to: YGNINTKGKTLFSSPQMKKTLGG*YNRHMS
Trigger: GCTCATGTGCCTGTTGTATCAACCCCCAAGTGTCTT...TTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp AATATGGCTCACCTTCCCTATATTTTACTAGCTACCTTCTTGGATGAGAATTTGCCTCGTTGGCAGCTTTaGACTCATATTTGCCTGACT +
Preference number: 4 (lower is better)
Translates to: NMAHLPYILLATFLDENLPRWQL*THICLT
Trigger: AGTCAGGCAAATATGAGTGCAAAGCTGCCAACGAGG...CAAATTCTCATCCAAGAAGGTAGCTAGTAAAATATAGGGAAGGTGAGCCATATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp AGTCTATGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACGTATCAAGTCTAAACTaGAAAATCATGAAAGAAGGC +
Preference number: 4 (lower is better)
Translates to: SLCTHGPFPWHALERDTHVSSLN*KIMKEG
Trigger: GCCTTCTTTCATGATTTTGCAGTTTAGACTTGATAC...GTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACATAGACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp AGGTTATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATAAACTTGGGAGGTCTTaGGCTCATGCTGTGTCTGAA +
Preference number: 4 (lower is better)
Translates to: RLWKYKHQRQDLIFFPTDKLGRS*AHAVSE
Trigger: TTCAGACACAGCATGAGCCCAAGACCTCCCAAGTTT...ATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATAACCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp AGGTTATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATCTTGTCGTCCTGTGGTaGCTTCATTGCTCTTGGATT +
Preference number: 4 (lower is better)
Translates to: RLWKYKHQRQDLIFFPTDLVVLW*LHCSWI
Trigger: AATCCAAGAGCAATGAAGCCACCACAGGACGACAAG...ATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATAACCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp AATATGGCTCACCTTCCCTATATTTTACTAGCTACCTTCTTGGATGAGAATTTGTGGAATCTGCGACTCTaGAGGATTCAAGAAGCTCAC +
Preference number: 4 (lower is better)
Translates to: NMAHLPYILLATFLDENLWNLRL*RIQEAH
Trigger: GTGAGCTTCTTGAATCCTCCAGAGTCGCAGATTCCA...CAAATTCTCATCCAAGAAGGTAGCTAGTAAAATATAGGGAAGGTGAGCCATATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp GTAAAGCCCTGGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATTTTCTTTCCTAAATTTTaGTTGGCGACATTTGAACAG +
Preference number: 4 (lower is better)
Translates to: VKPWIVLILQEAPWVKVIFFPKF*LATFEQ
Trigger: CTGTTCAAATGTCGCCAACCAAAATTTAGGAAAGAA...AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTAGGCAACCTCATATTTaGAGCTTTAGTCGTAATTCT +
Preference number: 4 (lower is better)
Translates to: LSLSLCLSLSVFCVTHFCRQPHI*SFSRNS
Trigger: AGAATTACGACTAAAGCTCCAAATATGAGGTTGCCT...ACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAACAACCAGGCCACCTTTaGGTTCTTGTCTTCTACAAC +
Preference number: 4 (lower is better)
Translates to: YGNINTKGKTLFSSPQMKQPGHL*VLVFYN
Trigger: GTTGTAGAAGACAAGAACTCAAAGGTGGCCTGGTTG...TTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TATTTTTACAGCATCCAGATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACATTCCATTGATAGTCTaGAGTGGCTACAAGTCAGCT +
Preference number: 4 (lower is better)
Translates to: YFYSIQMSLVWCSLYTAYIPLIV*SGYKSA
Trigger: AGCTGACTTGTAGCCACTTCAGACTATCAATGGAAT...GTATGCTGTGTAAAGACTACACCACACTAAGGACATCTGGATGCTGTAAAAATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TATTTTTACAGCATCCAGATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACGTATCTACAGCACAATaGGTCTATGTACACATGGAC +
Preference number: 4 (lower is better)
Translates to: YFYSIQMSLVWCSLYTAYVSTAQ*VYVHMD
Trigger: GTCCATGTGTACATAGACTCATTGTGCTGTAGATAC...GTATGCTGTGTAAAGACTACACCACACTAAGGACATCTGGATGCTGTAAAAATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp ATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACATTTGCTTAGTAGATATAGAGGAGCACAAGGAGTaGACTGCTTTTCATTATGGC +
Preference number: 4 (lower is better)
Translates to: MSLVWCSLYTAYICLVDIEEHKE*TAFHYG
Trigger: GCCATAATGAAAAGCAGTTCACTCCTTGTGCTCCTC...TATATCTACTAAGCAAATGTATGCTGTGTAAAGACTACACCACACTAAGGACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAAGAGGAGCACAAGGAGTaGACTGCTTTTCATTATGGC +
Preference number: 4 (lower is better)
Translates to: YGNINTKGKTLFSSPQMKEEHKE*TAFHYG
Trigger: GCCATAATGAAAAGCAGTTCACTCCTTGTGCTCCTC...TTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp AATATGGCTCACCTTCCCTATATTTTACTAGCTACCTTCTTGGATGAGAATTTGTGTCCTCTCATGAACTaGACCACTTTCAGTGCTTAC +
Preference number: 4 (lower is better)
Translates to: NMAHLPYILLATFLDENLCPLMN*TTFSAY
Trigger: GTAAGCACTGAAAGTGGTTCAGTTCATGAGAGGACA...CAAATTCTCATCCAAGAAGGTAGCTAGTAAAATATAGGGAAGGTGAGCCATATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TTTTGGTTGGCGACATTTGAACAGCATAGCTACATGCAAATGAGAATAGTTTACTGTCCTCTCATGAACTaGACCACTTTCAGTGCTTAC +
Preference number: 4 (lower is better)
Translates to: FWLATFEQHSYMQMRIVYCPLMN*TTFSAY
Trigger: GTAAGCACTGAAAGTGGTTCAGTTCATGAGAGGACA...GTAAACTATTCTCATTTGCATGTAGCTATGCTGTTCAAATGTCGCCAACCAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAAAACCCTCACTTTCAGGATaGGAAAACCAAGACTCAGGA +
Preference number: 4 (lower is better)
Translates to: WKYKHQRQDLIFFPTDEKPSLSG*ENQDSG
Trigger: TCCTGAGTCTTGGTTTTCTCATCCTGAAAGTGAGGG...TTTTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp GTGACTGCCTCTTCAATTTTTGGGGAATGCTTATTATTAAAGATGATACCCTTTCCTCGTTGGCAGCTTTaGACTCATATTTGCCTGACT +
Preference number: 4 (lower is better)
Translates to: VTASSIFGECLLLKMIPFPRWQL*THICLT
Trigger: AGTCAGGCAAATATGAGTGCAAAGCTGCCAACGAGG...AAAGGGTATCATCTTTAATAATAAGCATTCCCCAAAAATTGAAGAGGCAGTCAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp TGCGGGGTTTCAAACTTTGATTACCAAGGGACAAGATTCTTGAAGGAATTTATTACCATTCCCTTGGCATaGTTTAGAGAGAGACACACA +
Preference number: 4 (lower is better)
Translates to: CGVSNFDYQGTRFLKEFITIPLA*FRERHT
Trigger: TGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGT...AATAAATTCCTTCAAGAATCTTGTCCCTTGGTAATCAAAGTTTGAAACCCCGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp CTGAGGGAACAAACGGTGCTGACATGGCAGACATTTATTTCAATGGAGAAGTTCCCTTTGCTCAACAATTaGACAGAGCATAATTACAAT +
Preference number: 4 (lower is better)
Translates to: LREQTVLTWQTFISMEKFPLLNN*TEHNYN
Trigger: ATTGTAATTATGCTCTGTGCAATTGTTGAGCAAAGG...GAACTTCTCCATTGAAATAAATGTCTGCCATGTCAGCACCGTTTGTTCCCTCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp CCCCCTTCATGTATAAACACACAAAGTTGTGAAATAAACGGTCTCCCCCATCTCAAAGTGAGATGTACATaGTGGGTGAAAACAAATTCT +
Preference number: 4 (lower is better)
Translates to: PPSCINTQSCEINGLPHLKVRCT*WVKTNS
Trigger: AGAATTTGTTTTCACCCAGCATGTACATCTCACTTT...GAGATGGGGGAGACCGTTTATTTCACAACTTTGTGTGTTTATACATGAAGGGGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp CTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTGTAAAGTGAGATGTACATaGTGGGTGAAAACAAATTCT +
Preference number: 4 (lower is better)
Translates to: LSLSLSLSLCILCDAFLCKVRCT*WVKTNS
Trigger: AGAATTTGTTTTCACCCAGCATGTACATCTCACTTT...ACACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp CAAACAAGACTTTTTATCCAGCAAGGCAAAACCTTTGCTCAACAATTGCACAGAGGAAGTGTTCTCTTTTaGTTCTCTCCCCCTGAATTT +
Preference number: 4 (lower is better)
Translates to: QTRLFIQQGKTFAQQLHRGSVLF*FSPPEF
Trigger: AAATTCAGGGGGAGAGAAGCAAAAGAGAACACTTCC...TCTGTGCAATTGTTGAGCAAAGGTTTTGCCTTGCTGGATAAAAAGTCTTGTTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp GTGACTGCCTCTTCAATTTTTGGGGAATGCTTATTATTAAAGATGATACCCTTTCATGGACCATTCCCTTaGCATGCTTTAGAGAGAGAC +
Preference number: 4 (lower is better)
Translates to: VTASSIFGECLLLKMIPFHGPFP*HALERD
Trigger: GTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATG...AAAGGGTATCATCTTTAATAATAAGCATTCCCCAAAAATTGAAGAGGCAGTCAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TATTTTTACAGCATCCAGATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACGGAAGGAGCATAGCTTaGTTTGAATACACACTGATG +
Preference number: 4 (lower is better)
Translates to: YFYSIQMSLVWCSLYTAYGRSIA*FEYTLM
Trigger: CATCAGTGTGTATTCAAACCAAGCTATGCTCCTTCC...GTATGCTGTGTAAAGACTACACCACACTAAGGACATCTGGATGCTGTAAAAATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TGCGGGGTTTCAAACTTTGATTACCAAGGGACAAGATTCTTGAAGGAATTTATTCAATTCTTAGCACCCTaGCATAGGATAACAGTGGAC +
Preference number: 4 (lower is better)
Translates to: CGVSNFDYQGTRFLKEFIQFLAP*HRITVD
Trigger: GTCCACTGTTATCCTATGCCAGGGTGCTAAGAATTG...AATAAATTCCTTCAAGAATCTTGTCCCTTGGTAATCAAAGTTTGAAACCCCGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp AGGTTATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATCTTCAGGAAGCACCCTaGGTCAAAGTCATTTCTGTT +
Preference number: 4 (lower is better)
Translates to: RLWKYKHQRQDLIFFPTDLQEAP*VKVISV
Trigger: AACAGAAATGACTTTGACCCAGGGTGCTTCCTGAAG...ATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATAACCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TATTTTTACAGCATCCAGATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACGCAGTTGTAAAGCCCTaGATAGTTCTCATTCTTCAG +
Preference number: 4 (lower is better)
Translates to: YFYSIQMSLVWCSLYTAYAVVKP*IVLILQ
Trigger: CTGAAGAATGAGAACTATCCAGGGCTTTACAACTGC...GTATGCTGTGTAAAGACTACACCACACTAAGGACATCTGGATGCTGTAAAAATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTAAACAGATTTTTGTTTaGTCCTCCAAGAACGTGAAA +
Preference number: 4 (lower is better)
Translates to: LSLSLCLSLSVFCVTHFCKQIFV*SSKNVK
Trigger: TTTCACGTTCTTGGAGGACCAAACAAAAATCTGTTT...ACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CCCCCTTCATGTATAAACACACAAAGTTGTGAAATAAACGGTCTCCCCCATCTCTTCCTAAATTTTGGTTaGCGACATTTGAACAGCATA +
Preference number: 4 (lower is better)
Translates to: PPSCINTQSCEINGLPHLFLNFG*RHLNSI
Trigger: TATGCTGTTCAAATGTCGCCAACCAAAATTTAGGAA...GAGATGGGGGAGACCGTTTATTTCACAACTTTGTGTGTTTATACATGAAGGGGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp CAAACAAGACTTTTTATCCAGCAAGGCAAAACCTTTGCTCAACAATTGCACAGATCTGTATTAGAGCTCTaGCAGTATCTCCAGAATACA +
Preference number: 4 (lower is better)
Translates to: QTRLFIQQGKTFAQQLHRSVLEL*QYLQNT
Trigger: TGTATTCTGGAGATACTGTCAGAGCTCTAATACAGA...TCTGTGCAATTGTTGAGCAAAGGTTTTGCCTTGCTGGATAAAAAGTCTTGTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp GTGACTGCCTCTTCAATTTTTGGGGAATGCTTATTATTAAAGATGATACCCTTTTTCTCTGTCCTCTCATaGACTGAACCACTTTCAGTG +
Preference number: 4 (lower is better)
Translates to: VTASSIFGECLLLKMIPFFSVLS*TEPLSV
Trigger: CACTGAAAGTGGTTCAGTTCATGAGAGGACAGAGAA...AAAGGGTATCATCTTTAATAATAAGCATTCCCCAAAAATTGAAGAGGCAGTCAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp AATATGGCTCACCTTCCCTATATTTTACTAGCTACCTTCTTGGATGAGAATTTGGGCCCTACCTTTCCCTaGCTTTTCTCTAAACTATAT +
Preference number: 4 (lower is better)
Translates to: NMAHLPYILLATFLDENLGPTFP*LFSKLY
Trigger: ATATAGTTTAGAGAAAAGTCAGGGAAAGGTAGGGCC...CAAATTCTCATCCAAGAAGGTAGCTAGTAAAATATAGGGAAGGTGAGCCATATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp ATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACATTTGCTTAGTAGATATAAGTGACTGGAAACTCTaGTGCCTTCTGTTCTTTCAG +
Preference number: 4 (lower is better)
Translates to: MSLVWCSLYTAYICLVDISDWKL*CLLFFQ
Trigger: CTGAAAGAACAGAAGGCATCAGAGTTTCCAGTCACT...TATATCTACTAAGCAAATGTATGCTGTGTAAAGACTACACCACACTAAGGACAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAAAACTTACCTACACAAAGTaGTGTGATTGCTGGGAAGTG +
Preference number: 4 (lower is better)
Translates to: WKYKHQRQDLIFFPTDEKLTYTK*CDCWEV
Trigger: CACTTCCCAGCAATCACATCACTTTGTGTAGGTAAG...TTTTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp GTGACTGCCTCTTCAATTTTTGGGGAATGCTTATTATTAAAGATGATACCCTTTACCATTCCCTTGGCATaGTTTAGAGAGAGACACACA +
Preference number: 4 (lower is better)
Translates to: VTASSIFGECLLLKMIPFTIPLA*FRERHT
Trigger: TGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGT...AAAGGGTATCATCTTTAATAATAAGCATTCCCCAAAAATTGAAGAGGCAGTCAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp AGGTTATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATTTACTCAACACATGCTaGTCATTTTCACAGTGGAGC +
Preference number: 4 (lower is better)
Translates to: RLWKYKHQRQDLIFFPTDLLNTC*SFSQWS
Trigger: GCTCCACTGTGAAAATGAGCAGCATGTGTTGAGTAA...ATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATAACCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp AGGTTATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATATAGGAAACAATCTCTaGTCAGGGGAATTCATGGGA +
Preference number: 4 (lower is better)
Translates to: RLWKYKHQRQDLIFFPTDIGNNL*SGEFMG
Trigger: TCCCATGAATTCCCCTGAGCAGAGATTGTTTCCTAT...ATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATAACCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp GTGACTGCCTCTTCAATTTTTGGGGAATGCTTATTATTAAAGATGATACCCTTTGCAAGGCAAAACCTTTaGTCAACAATTGCACAGAGC +
Preference number: 4 (lower is better)
Translates to: VTASSIFGECLLLKMIPFARQNL*STIAQS
Trigger: GCTCTGTGCAATTGTTGAGCAAAGGTTTTGCCTTGC...AAAGGGTATCATCTTTAATAATAAGCATTCCCCAAAAATTGAAGAGGCAGTCAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp CAAACAAGACTTTTTATCCAGCAAGGCAAAACCTTTGCTCAACAATTGCACAGATCCTCATTTGTTACATaGATAATACCCAGTCTGGCT +
Preference number: 4 (lower is better)
Translates to: QTRLFIQQGKTFAQQLHRSSFVT*IIPSLA
Trigger: AGCCAGACTGGGTATTATGCATGTAACAAATGAGGA...TCTGTGCAATTGTTGAGCAAAGGTTTTGCCTTGCTGGATAAAAAGTCTTGTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp TGCGGGGTTTCAAACTTTGATTACCAAGGGACAAGATTCTTGAAGGAATTTATTGGACAAGAGGATCTGTaGTCAATGCATCTAGAACAT +
Preference number: 4 (lower is better)
Translates to: CGVSNFDYQGTRFLKEFIGQEDL*SMHLEH
Trigger: ATGTTCTAGATGCATTGAGCACAGATCCTCTTGTCC...AATAAATTCCTTCAAGAATCTTGTCCCTTGGTAATCAAAGTTTGAAACCCCGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp TGCGGGGTTTCAAACTTTGATTACCAAGGGACAAGATTCTTGAAGGAATTTATTGGAAGTGTTCTCTTTTaGTTCTCTCCCCCTGAATTT +
Preference number: 4 (lower is better)
Translates to: CGVSNFDYQGTRFLKEFIGSVLF*FSPPEF
Trigger: AAATTCAGGGGGAGAGAAGCAAAAGAGAACACTTCC...AATAAATTCCTTCAAGAATCTTGTCCCTTGGTAATCAAAGTTTGAAACCCCGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CAAACAAGACTTTTTATCCAGCAAGGCAAAACCTTTGCTCAACAATTGCACAGAGATATTGGAGATCTTTaGTGGGACTTGTACGATCAA +
Preference number: 4 (lower is better)
Translates to: QTRLFIQQGKTFAQQLHRDIGDL*WDLYDQ
Trigger: TTGATCGTACAAGTCCCACCAAAGATCTCCAATATC...TCTGTGCAATTGTTGAGCAAAGGTTTTGCCTTGCTGGATAAAAAGTCTTGTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAAAACATCCGAGGAGATATTaGAGATCTTTGGTGGGACTT +
Preference number: 4 (lower is better)
Translates to: WKYKHQRQDLIFFPTDEKHPRRY*RSLVGL
Trigger: AAGTCCCACCAAAGATCTCCAATATCTCCTCGGATG...TTTTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp ATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACATTTGCTTAGTAGATATATACCAATTTCTTGAATaGGGTGGGGGATTGTGGGTA +
Preference number: 4 (lower is better)
Translates to: MSLVWCSLYTAYICLVDIYQFLE*GGGLWV
Trigger: TACCCACAATCCCCCACCCCATTCAAGAAATTGGTA...TATATCTACTAAGCAAATGTATGCTGTGTAAAGACTACACCACACTAAGGACAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000333617.8
CDS-3UTR CCA 90 bp TATATTGCACAATTTCTTAGAATCCAGATGGCAAGCTTTCCCACTGCTTTTGTTGGAAGGAGCATAGCTTaGTTTGAATACACACTGATG +
Preference number: 4 (lower is better)
Translates to: YIAQFLRIQMASFPTAFVGRSIA*FEYTLM
Trigger: CATCAGTGTGTATTCAAACCAAGCTATGCTCCTTCC...AACAAAAGCAGTGGGAAAGCTTGCCATCTGGATTCTAAGAAATTGTGCAATATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TGCGGGGTTTCAAACTTTGATTACCAAGGGACAAGATTCTTGAAGGAATTTATTAGTGAGAGCAAGGGTTaGTTTTCTGACAAAGACATC +
Preference number: 4 (lower is better)
Translates to: CGVSNFDYQGTRFLKEFISESKG*FSDKDI
Trigger: GATGTCTTTGTCAGAAAACCAACCCTTGCTCTCACT...AATAAATTCCTTCAAGAATCTTGTCCCTTGGTAATCAAAGTTTGAAACCCCGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp AATATGGCTCACCTTCCCTATATTTTACTAGCTACCTTCTTGGATGAGAATTTGAGTGAGAGCAAGGGTTaGTTTTCTGACAAAGACATC +
Preference number: 4 (lower is better)
Translates to: NMAHLPYILLATFLDENLSESKG*FSDKDI
Trigger: GATGTCTTTGTCAGAAAACCAACCCTTGCTCTCACT...CAAATTCTCATCCAAGAAGGTAGCTAGTAAAATATAGGGAAGGTGAGCCATATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CAAACAAGACTTTTTATCCAGCAAGGCAAAACCTTTGCTCAACAATTGCACAGATGCTGCATAGGAATATaGCTCACCTTCCCTATATTT +
Preference number: 4 (lower is better)
Translates to: QTRLFIQQGKTFAQQLHRCCIGI*LTFPIF
Trigger: AAATATAGGGAAGGTGAGCCATATTCCTATGCAGCA...TCTGTGCAATTGTTGAGCAAAGGTTTTGCCTTGCTGGATAAAAAGTCTTGTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp ATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACATTTGCTTAGTAGATATAGATTCAATGATTTCTTaGTGTCAGTCCTCTGGCCCT +
Preference number: 4 (lower is better)
Translates to: MSLVWCSLYTAYICLVDIDSMIS*CQSSGP
Trigger: AGGGCCAGAGGACTGACACCAAGAAATCATTGAATC...TATATCTACTAAGCAAATGTATGCTGTGTAAAGACTACACCACACTAAGGACAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TATTTTTACAGCATCCAGATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACACAAAACGGAAAAAGTaGGGCTCTATGTCTTTCTAC +
Preference number: 4 (lower is better)
Translates to: YFYSIQMSLVWCSLYTAYTKRKK*GSMSFY
Trigger: GTAGAAAGACATAGAGCCCCACTTTTTCCGTTTTGT...GTATGCTGTGTAAAGACTACACCACACTAAGGACATCTGGATGCTGTAAAAATA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TTTTGGTTGGCGACATTTGAACAGCATAGCTACATGCAAATGAGAATAGTTTACTTCTTAGAATCCAGATaGCAAGCTTTCCCACTGCTT +
Preference number: 4 (lower is better)
Translates to: FWLATFEQHSYMQMRIVYFLESR*QAFPLL
Trigger: AAGCAGTGGGAAAGCTTGCCATCTGGATTCTAAGAA...GTAAACTATTCTCATTTGCATGTAGCTATGCTGTTCAAATGTCGCCAACCAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp ATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACATTTGCTTAGTAGATATATACCAAGAAGACACTTaGGGGTTGATACAACAGGCA +
Preference number: 4 (lower is better)
Translates to: MSLVWCSLYTAYICLVDIYQEDT*GLIQQA
Trigger: TGCCTGTTGTATCAACCCCCAAGTGTCTTCTTGGTA...TATATCTACTAAGCAAATGTATGCTGTGTAAAGACTACACCACACTAAGGACAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CAA 72 bp AGTTTCCAAAGACACACATTTACTGTAATGAGGTACTaGGCCCAGGATGACAGAAAACTAATGTTTCCTTTC +
Preference number: 4 (lower is better)
Translates to: SFQRHTFTVMRY*AQDDRKLMFPF
Trigger: GAAAGGAAACATTAGTTTTCTGTCATCCTGGGCCAAGTACCTCATTACAGTAAATGTGTGTCTTTGGAAACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAAAAAAACACACAAAGTTGTaGAATAAACGGTCTCCCCCA +
Preference number: 4 (lower is better)
Translates to: WKYKHQRQDLIFFPTDEKKHTKL*NKRSPP
Trigger: TGGGGGAGACCGTTTATTTCACAACTTTGTGTGTTT...TTTTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCA
38% GC, longest homopolymer 8 nt, total homopolymer stretches 21 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp AGGTTATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATTTTCTTCCCCACAGATaGAAAAAGATGAAGGAAGGA +
Preference number: 4 (lower is better)
Translates to: RLWKYKHQRQDLIFFPTDFLPHR*KKMKEG
Trigger: TCCTTCCTTCATCTTTTTTCATCTGTGGGGAAGAAA...ATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATAACCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp GTGACTGCCTCTTCAATTTTTGGGGAATGCTTATTATTAAAGATGATACCCTTTATTCCATTGATAGTCTaGAGTGGCTACAAGTCAGCT +
Preference number: 4 (lower is better)
Translates to: VTASSIFGECLLLKMIPFIPLIV*SGYKSA
Trigger: AGCTGACTTGTAGCCACTTCAGACTATCAATGGAAT...AAAGGGTATCATCTTTAATAATAAGCATTCCCCAAAAATTGAAGAGGCAGTCAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAAAAGGCCCTACCTTTCCCTaGCTTTTCTCTAAACTATAT +
Preference number: 4 (lower is better)
Translates to: WKYKHQRQDLIFFPTDEKGPTFP*LFSKLY
Trigger: ATATAGTTTAGAGAAAAGTCAGGGAAAGGTAGGGCC...TTTTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp ATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACATTTGCTTAGTAGATATACGGGGTTTCAAACTTTaGTTACCAAGGGACAAGATT +
Preference number: 4 (lower is better)
Translates to: MSLVWCSLYTAYICLVDIRGFKL*LPRDKI
Trigger: AATCTTGTCCCTTGGTAATCAAAGTTTGAAACCCCG...TATATCTACTAAGCAAATGTATGCTGTGTAAAGACTACACCACACTAAGGACAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp GTGACTGCCTCTTCAATTTTTGGGGAATGCTTATTATTAAAGATGATACCCTTTGAAAGACCAAAGAGGTaGCTTGAGCAGGATATAAAC +
Preference number: 4 (lower is better)
Translates to: VTASSIFGECLLLKMIPFERPKR*LEQDIN
Trigger: GTTTATATCCTGCTCAAGTCACCTCTTTGGTCTTTC...AAAGGGTATCATCTTTAATAATAAGCATTCCCCAAAAATTGAAGAGGCAGTCAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp TATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAACCTTTTTGCTTGAAGTaGACGGTGGTACCAATTTCT +
Preference number: 4 (lower is better)
Translates to: YGNINTKGKTLFSSPQMKPFCLK*TVVPIS
Trigger: AGAAATTGGTACCACCGTGCACTTCAAGCAAAAAGG...TTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000333617.8
CDS-3UTR GCA 90 bp GTGACTGCCTCTTCAATTTTTGGGGAATGCTTATTATTAAAGATGATACCCTTTTTACTCAACACATGCTaGTCATTTTCACAGTGGAGC +
Preference number: 4 (lower is better)
Translates to: VTASSIFGECLLLKMIPFLLNTC*SFSQWS
Trigger: GCTCCACTGTGAAAATGAGCAGCATGTGTTGAGTAA...AAAGGGTATCATCTTTAATAATAAGCATTCCCCAAAAATTGAAGAGGCAGTCAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp TGCGGGGTTTCAAACTTTGATTACCAAGGGACAAGATTCTTGAAGGAATTTATTTCTGTTGACTTTTTCTaGCTTGCTCACTTTCACTGT +
Preference number: 4 (lower is better)
Translates to: CGVSNFDYQGTRFLKEFISVDFF*LAHFHC
Trigger: ACAGTGAAAGTGAGCAAGGCAGAAAAAGTCAACAGA...AATAAATTCCTTCAAGAATCTTGTCCCTTGGTAATCAAAGTTTGAAACCCCGCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp GTGACTGCCTCTTCAATTTTTGGGGAATGCTTATTATTAAAGATGATACCCTTTGTTGGTGCTTTTCAGTaGGGGGTTTCAAACTTTGAT +
Preference number: 4 (lower is better)
Translates to: VTASSIFGECLLLKMIPFVGAFQ*GVSNFD
Trigger: ATCAAAGTTTGAAACCCCGCACTGAAAAGCACCAAC...AAAGGGTATCATCTTTAATAATAAGCATTCCCCAAAAATTGAAGAGGCAGTCAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp TATTTTTACAGCATCCAGATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACGAGAGAAAACCCATCTaGTTTTCTATAAGCCTTAGT +
Preference number: 4 (lower is better)
Translates to: YFYSIQMSLVWCSLYTAYERKPI*FSISLS
Trigger: ACTAAGGCTTATAGAAAAGCAGATGGGTTTTCTCTC...GTATGCTGTGTAAAGACTACACCACACTAAGGACATCTGGATGCTGTAAAAATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp TGCGGGGTTTCAAACTTTGATTACCAAGGGACAAGATTCTTGAAGGAATTTATTGAGATAACAAACAGCTaGTGTTTACAAACAGTGCTG +
Preference number: 4 (lower is better)
Translates to: CGVSNFDYQGTRFLKEFIEITNS*CLQTVL
Trigger: CAGCACTGTTTGTAAACAGCAGCTGTTTGTTATCTC...AATAAATTCCTTCAAGAATCTTGTCCCTTGGTAATCAAAGTTTGAAACCCCGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp AGGTTATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATATTGGAGATCTTTGGTaGGACTTGTACGATCAAGTA +
Preference number: 4 (lower is better)
Translates to: RLWKYKHQRQDLIFFPTDIGDLW*DLYDQV
Trigger: TACTTGATCGTACAAGTCCCACCAAAGATCTCCAAT...ATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATAACCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp AGGTTATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGATATTGGAGATCTTTaGTGGGACTTGTACGATCAA +
Preference number: 4 (lower is better)
Translates to: RLWKYKHQRQDLIFFPTDDIGDL*WDLYDQ
Trigger: TTGATCGTACAAGTCCCACCAAAGATCTCCAATATC...ATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATAACCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp AGGTTATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATCTTAGGATCTCCAAGTaGTTCATCATTCTTTCACTG +
Preference number: 4 (lower is better)
Translates to: RLWKYKHQRQDLIFFPTDLRISK*FIILSL
Trigger: CAGTGAAAGAATGATGAACCACTTGGAGATCCTAAG...ATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATAACCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TTTTGGTTGGCGACATTTGAACAGCATAGCTACATGCAAATGAGAATAGTTTACATTAACCTAGAACACTaGGAAAAACATCTGCAGAGG +
Preference number: 4 (lower is better)
Translates to: FWLATFEQHSYMQMRIVYINLEH*EKHLQR
Trigger: CCTCTGCAGATGTTTTTCCCAGTGTTCTAGGTTAAT...GTAAACTATTCTCATTTGCATGTAGCTATGCTGTTCAAATGTCGCCAACCAAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp AGGTTATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATATTAACCTAGAACACTaGGAAAAACATCTGCAGAGG +
Preference number: 4 (lower is better)
Translates to: RLWKYKHQRQDLIFFPTDINLEH*EKHLQR
Trigger: CCTCTGCAGATGTTTTTCCCAGTGTTCTAGGTTAAT...ATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATAACCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp AATATGGCTCACCTTCCCTATATTTTACTAGCTACCTTCTTGGATGAGAATTTGCAAACGGTGCTGACATaGCAGACATTTATTTCAATG +
Preference number: 4 (lower is better)
Translates to: NMAHLPYILLATFLDENLQTVLT*QTFISM
Trigger: CATTGAAATAAATGTCTGCCATGTCAGCACCGTTTG...CAAATTCTCATCCAAGAAGGTAGCTAGTAAAATATAGGGAAGGTGAGCCATATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp CAAACAAGACTTTTTATCCAGCAAGGCAAAACCTTTGCTCAACAATTGCACAGAAGGCAACCTCATATTTaGAGCTTTAGTCGTAATTCT +
Preference number: 4 (lower is better)
Translates to: QTRLFIQQGKTFAQQLHRRQPHI*SFSRNS
Trigger: AGAATTACGACTAAAGCTCCAAATATGAGGTTGCCT...TCTGTGCAATTGTTGAGCAAAGGTTTTGCCTTGCTGGATAAAAAGTCTTGTTTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TATATTGCACAATTTCTTAGAATCCAGATGGCAAGCTTTCCCACTGCTTTTGTTAACTACAGCAACAGTTaGGACAATCTCCACTTAGAT +
Preference number: 4 (lower is better)
Translates to: YIAQFLRIQMASFPTAFVNYSNS*DNLHLD
Trigger: ATCTAAGTGGAGATTGTCCCAACTGTTGCTGTAGTT...AACAAAAGCAGTGGGAAAGCTTGCCATCTGGATTCTAAGAAATTGTGCAATATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp ATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACATTTGCTTAGTAGATATATTTCTTCCCCACAGATaGAAAAAGATGAAGGAAGGA +
Preference number: 4 (lower is better)
Translates to: MSLVWCSLYTAYICLVDIFLPHR*KKMKEG
Trigger: TCCTTCCTTCATCTTTTTTCATCTGTGGGGAAGAAA...TATATCTACTAAGCAAATGTATGCTGTGTAAAGACTACACCACACTAAGGACAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAATCTGTATTAGAGCTCTaGCAGTATCTCCAGAATACA +
Preference number: 4 (lower is better)
Translates to: YGNINTKGKTLFSSPQMKSVLEL*QYLQNT
Trigger: TGTATTCTGGAGATACTGTCAGAGCTCTAATACAGA...TTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAACAAGGGTTGGTTTTCTaGCAAAGACATCTATATGCA +
Preference number: 4 (lower is better)
Translates to: YGNINTKGKTLFSSPQMKQGLVF*QRHLYA
Trigger: TGCATATAGATGTCTTTGTCAGAAAACCAACCCTTG...TTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp AATATGGCTCACCTTCCCTATATTTTACTAGCTACCTTCTTGGATGAGAATTTGACACTTTCAATCCTATaGAATTTCTGGGGACAATGT +
Preference number: 4 (lower is better)
Translates to: NMAHLPYILLATFLDENLTLSIL*NFWGQC
Trigger: ACATTGTCCCCAGAAATTTCATAGGATTGAAAGTGT...CAAATTCTCATCCAAGAAGGTAGCTAGTAAAATATAGGGAAGGTGAGCCATATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TTTTGGTTGGCGACATTTGAACAGCATAGCTACATGCAAATGAGAATAGTTTACACACTTTCAATCCTATaGAATTTCTGGGGACAATGT +
Preference number: 4 (lower is better)
Translates to: FWLATFEQHSYMQMRIVYTLSIL*NFWGQC
Trigger: ACATTGTCCCCAGAAATTTCATAGGATTGAAAGTGT...GTAAACTATTCTCATTTGCATGTAGCTATGCTGTTCAAATGTCGCCAACCAAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp GTGACTGCCTCTTCAATTTTTGGGGAATGCTTATTATTAAAGATGATACCCTTTGTCCTTAGTGTAATTTaGATGTGTCCCTTCTCTACA +
Preference number: 4 (lower is better)
Translates to: VTASSIFGECLLLKMIPFVLSVI*MCPFST
Trigger: TGTAGAGAAGGGACACATTCAAATTACACTAAGGAC...AAAGGGTATCATCTTTAATAATAAGCATTCCCCAAAAATTGAAGAGGCAGTCAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAAAAGGGAAACTTATCCCATaGGAAATTCCTTCCAAAACA +
Preference number: 4 (lower is better)
Translates to: WKYKHQRQDLIFFPTDEKGKLIP*EIPSKT
Trigger: TGTTTTGGAAGGAATTTCTCATGGGATAAGTTTCCC...TTTTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp ATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACATTTGCTTAGTAGATATAAAAAAGAGGTACTTCTaGAATGACCATGAAAACGGG +
Preference number: 4 (lower is better)
Translates to: MSLVWCSLYTAYICLVDIKKRYF*NDHENG
Trigger: CCCGTTTTCATGGTCATTTCAGAAGTACCTCTTTTT...TATATCTACTAAGCAAATGTATGCTGTGTAAAGACTACACCACACTAAGGACAT
37% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp TATTTTTACAGCATCCAGATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACGTATCAAGTCTAAACTaGAAAATCATGAAAGAAGGC +
Preference number: 4 (lower is better)
Translates to: YFYSIQMSLVWCSLYTAYVSSLN*KIMKEG
Trigger: GCCTTCTTTCATGATTTTGCAGTTTAGACTTGATAC...GTATGCTGTGTAAAGACTACACCACACTAAGGACATCTGGATGCTGTAAAAATA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp GTGACTGCCTCTTCAATTTTTGGGGAATGCTTATTATTAAAGATGATACCCTTTCTCCATTGTTCACACTaGTTAGGGAACACTTTCAAT +
Preference number: 4 (lower is better)
Translates to: VTASSIFGECLLLKMIPFLHCSH*LGNTFN
Trigger: ATTGAAAGTGTTCCCTAAGCAGTGTGAACAATGGAG...AAAGGGTATCATCTTTAATAATAAGCATTCCCCAAAAATTGAAGAGGCAGTCAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp ATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACATTTGCTTAGTAGATATAGAGATAACAAACAGCTaGTGTTTACAAACAGTGCTG +
Preference number: 4 (lower is better)
Translates to: MSLVWCSLYTAYICLVDIEITNS*CLQTVL
Trigger: CAGCACTGTTTGTAAACAGCAGCTGTTTGTTATCTC...TATATCTACTAAGCAAATGTATGCTGTGTAAAGACTACACCACACTAAGGACAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAAAAATTGGAGATCTTTGGTaGGACTTGTACGATCAAGTA +
Preference number: 4 (lower is better)
Translates to: WKYKHQRQDLIFFPTDEKIGDLW*DLYDQV
Trigger: TACTTGATCGTACAAGTCCCACCAAAGATCTCCAAT...TTTTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCA
37% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp AGGTTATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATATTGATAGTCTGAAGTaGCTACAAGTCAGCTCAAAT +
Preference number: 4 (lower is better)
Translates to: RLWKYKHQRQDLIFFPTDIDSLK*LQVSSN
Trigger: ATTTGAGCTGACTTGTAGCCACTTCAGACTATCAAT...ATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATAACCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAACTTAGGATCTCCAAGTaGTTCATCATTCTTTCACTG +
Preference number: 4 (lower is better)
Translates to: YGNINTKGKTLFSSPQMKLRISK*FIILSL
Trigger: CAGTGAAAGAATGATGAACCACTTGGAGATCCTAAG...TTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAAAAACAAAACGGAAAAAGTaGGGCTCTATGTCTTTCTAC +
Preference number: 4 (lower is better)
Translates to: WKYKHQRQDLIFFPTDEKTKRKK*GSMSFY
Trigger: GTAGAAAGACATAGAGCCCCACTTTTTCCGTTTTGT...TTTTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCA
37% GC, longest homopolymer 6 nt, total homopolymer stretches 23 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp ATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACATTTGCTTAGTAGATATATCACAGCTTTATTTGTaGCTGAACTTGGGGTTAGAA +
Preference number: 4 (lower is better)
Translates to: MSLVWCSLYTAYICLVDISQLYL*LNLGLE
Trigger: TTCTAACCCCAAGTTCAGCCACAAATAAAGCTGTGA...TATATCTACTAAGCAAATGTATGCTGTGTAAAGACTACACCACACTAAGGACAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp ATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACATTTGCTTAGTAGATATAATCAAAGGACAACTTTaGATAGATGCTAACCTGAGC +
Preference number: 4 (lower is better)
Translates to: MSLVWCSLYTAYICLVDIIKGQL*IDANLS
Trigger: GCTCAGGTTAGCATCTATCCAAAGTTGTCCTTTGAT...TATATCTACTAAGCAAATGTATGCTGTGTAAAGACTACACCACACTAAGGACAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR TCA 90 bp TGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAAAAGATACCCTTTATTCTTaGACTAAGAAGACCAAACTG +
Preference number: 4 (lower is better)
Translates to: WKYKHQRQDLIFFPTDEKDTLYS*TKKTKL
Trigger: CAGTTTGGTCTTCTTAGTTCAAGAATAAAGGGTATC...TTTTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp TATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAAAGTTTAGCTTTTGTGTaGAAAGGAGGTAAGTCCATT +
Preference number: 4 (lower is better)
Translates to: YGNINTKGKTLFSSPQMKSLAFV*KGGKSI
Trigger: AATGGACTTACCTCCTTTGCACACAAAAGCTAAACT...TTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp TATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAAAGAAATCATCCTTTCTaGTTACCCTTTTCTCAGAGA +
Preference number: 4 (lower is better)
Translates to: YGNINTKGKTLFSSPQMKRNHPF*LPFSQR
Trigger: TCTCTGAGAAAAGGGTAAGCAGAAAGGATGATTTCT...TTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR GCA 90 bp ATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACATTTGCTTAGTAGATATAAGAAATCATCCTTTCTaGTTACCCTTTTCTCAGAGA +
Preference number: 4 (lower is better)
Translates to: MSLVWCSLYTAYICLVDIRNHPF*LPFSQR
Trigger: TCTCTGAGAAAAGGGTAAGCAGAAAGGATGATTTCT...TATATCTACTAAGCAAATGTATGCTGTGTAAAGACTACACCACACTAAGGACAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TGCGGGGTTTCAAACTTTGATTACCAAGGGACAAGATTCTTGAAGGAATTTATTAGACATTTATTTCAATaGAGAAGTTCCTCCCATGAA +
Preference number: 4 (lower is better)
Translates to: CGVSNFDYQGTRFLKEFIRHLFQ*RSSSHE
Trigger: TTCATGGGAGGAACTTCTCCATTGAAATAAATGTCT...AATAAATTCCTTCAAGAATCTTGTCCCTTGGTAATCAAAGTTTGAAACCCCGCA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp TATATTGCACAATTTCTTAGAATCCAGATGGCAAGCTTTCCCACTGCTTTTGTTTTCCTAAATTTTGGTTaGCGACATTTGAACAGCATA +
Preference number: 4 (lower is better)
Translates to: YIAQFLRIQMASFPTAFVFLNFG*RHLNSI
Trigger: TATGCTGTTCAAATGTCGCCAACCAAAATTTAGGAA...AACAAAAGCAGTGGGAAAGCTTGCCATCTGGATTCTAAGAAATTGTGCAATATA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
3UTR CAA 72 bp AACAAACAAGACTTTTTATCCAGCAAGGCAAAACCTTaGCTCAACAATTGCACAGAGCATAATTACAATTCT +
Preference number: 4 (lower is better)
Translates to: NKQDFLSSKAKP*LNNCTEHNYNS
Trigger: AGAATTGTAATTATGCTCTGTGCAATTGTTGAGCAAAGGTTTTGCCTTGCTGGATAAAAAGTCTTGTTTGTT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CCA 90 bp GTGACTGCCTCTTCAATTTTTGGGGAATGCTTATTATTAAAGATGATACCCTTTATGACATACCATATTTaGCTCTGCAAGATTACATTC +
Preference number: 4 (lower is better)
Translates to: VTASSIFGECLLLKMIPFMTYHI*LCKITF
Trigger: GAATGTAATCTTGCAGAGCCAAATATGGTATGTCAT...AAAGGGTATCATCTTTAATAATAAGCATTCCCCAAAAATTGAAGAGGCAGTCAC
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS CCA 90 bp CCTGACCATGGTGGCCACGCCGAGGTGCGGGTCCGCGGGGTGCTCTaGAGGGGTGCGCGCTGCTCGCGAGGAGAGGCTTCACCAACACGG +
Preference number: 5 (lower is better)
Translates to: PDHGGHAEVRVRGVL*RGARCSRGEASPTR
Trigger: CCGTGTTGGTGAAGCCTCTCCTCGCGAGCAGCGCGCACCCCTCCAGAGCACCCCGCGGACCCGCACCTCGGCGTGGCCACCATGGTCAGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000490035.7
CDS GCA 90 bp ACTCTCCTGACCATGGTGGCCACGCCGAGGTGCGGGTCCGCGGGGTaGTCTGGAGGGGTGCGCGCTGCTCGCGAGGAGAGGCTTCACCAA +
Preference number: 5 (lower is better)
Translates to: TLLTMVATPRCGSAG*SGGVRAAREERLHQ
Trigger: TTGGTGAAGCCTCTCCTCGCGAGCAGCGCGCACCCCTCCAGAGCACCCCGCGGACCCGCACCTCGGCGTGGCCACCATGGTCAGGAGAGT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000490035.7
CDS TCA 90 bp TCAGTAGGACCAGTGGCAACTGTTTCCGATCCGGCTGAACTCTCCTaGCCATGGTGGCCACGCCGAGGTGCGGGTCCGCGGGGTGCTCTG +
Preference number: 5 (lower is better)
Translates to: SVGPVATVSDPAELS*PWWPRRGAGPRGAL
Trigger: CAGAGCACCCCGCGGACCCGCACCTCGGCGTGGCCACCATGGTCAGGAGAGTTCAGCCGGATCGGAAACAGTTGCCACTGGTCCTACTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490035.7
CDS TCA 90 bp CAGAGCAATCTCAGTAGGACCAGTGGCAACTGTTTCCGATCCGGCTaGACTCTCCTGACCATGGTGGCCACGCCGAGGTGCGGGTCCGCG +
Preference number: 5 (lower is better)
Translates to: QSNLSRTSGNCFRSG*TLLTMVATPRCGSA
Trigger: CGCGGACCCGCACCTCGGCGTGGCCACCATGGTCAGGAGAGTTCAGCCGGATCGGAAACAGTTGCCACTGGTCCTACTGAGATTGCTCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000490035.7
CDS-3UTR CAA 90 bp TGCCTCTTTCCCCGCCATCTCCCCCAGCAACTTGTTACAGCCGCATCTCACAATGAGGCTCCTGGTAGCTaGGGATTGCTGCAGCGTGCC +
Preference number: 5 (lower is better)
Translates to: CLFPRHLPQQLVTAASHNEAPGS*GLLQRA
Trigger: GGCACGCTGCAGCAATCCCAAGCTACCAGGAGCCTC...ATTGTGAGATGCGGCTGTAACAAGTTGCTGGGGGAGATGGCGGGGAAAGAGGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS TCA 90 bp GGCAGAGCAGAGATGCTGCCAGCAGCCACAGTGGTACGGCCAGACTaGTGGATCCATTTATTCCTCTCACCGACCCAGGTCCTTTTTGCT +
Preference number: 5 (lower is better)
Translates to: GRAEMLPAATVVRPD*WIHLFLSPTQVLFA
Trigger: AGCAAAAAGGACCTGGGTCGGTGAGAGGAATAAATGGATCCATCAGTCTGGCCGTACCACTGTGGCTGCTGGCAGCATCTCTGCTCTGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000333617.8
CDS TCA 90 bp GGCAGAGCAGAGATGCTGCCAGCAGCCACAGTGGTACGGCCAGACTaGTGGATCCATTTATTCCTCTCACCGACCCAGGTCCTGAATCAA +
Preference number: 5 (lower is better)
Translates to: GRAEMLPAATVVRPD*WIHLFLSPTQVLNQ
Trigger: TTGATTCAGGACCTGGGTCGGTGAGAGGAATAAATGGATCCATCAGTCTGGCCGTACCACTGTGGCTGCTGGCAGCATCTCTGCTCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000475403.2
CDS-3UTR CAA 90 bp GGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCGGTTCAGGACGGCCATaGGCCATGCAGACCAGAGTC +
Preference number: 5 (lower is better)
Translates to: GLPHLSLSLSLCLSLSVFGSGRP*AMQTRV
Trigger: GACTCTGGTCTGCATGGCCAATGGCCGTCCTGAACC...GAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp ATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGGTTCAGGACGGCCATaGGCCATGCAGACCAGAGTC +
Preference number: 5 (lower is better)
Translates to: INGLPHLSLSLSLCLSLSGSGRP*AMQTRV
Trigger: GACTCTGGTCTGCATGGCCAATGGCCGTCCTGAACC...AGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp ATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTTTGGTGACCCCCAGCTaGTTGGCAGCCACACAGGTG +
Preference number: 5 (lower is better)
Translates to: INGLPHLSLSLSLCLSLSLVTPS*LAATQV
Trigger: CACCTGTGTGGCTGCCAACAAGCTGGGGGTCACCAA...AGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TGCCTCTTTCCCCGCCATCTCCCCCAGCAACTTGTTACAGCCGCATCTCACAATGAGCCTGGGCATCTGTaGACTTTTTCTGCCTTGCTC +
Preference number: 5 (lower is better)
Translates to: CLFPRHLPQQLVTAASHNEPGHL*TFSALL
Trigger: GAGCAAGGCAGAAAAAGTCAACAGATGCCCAGGCTC...ATTGTGAGATGCGGCTGTAACAAGTTGCTGGGGGAGATGGCGGGGAAAGAGGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS TCA 90 bp CCACTCAAAGTCAGGTGCAGGCACTGCCGAGGCCTCACATTTGAGTaGAGCTTGTCGTCCTGTGGTGGCTTCATTGCTCTTGGATTCTGT +
Preference number: 5 (lower is better)
Translates to: PLKVRCRHCRGLTFE*SLSSCGGFIALGFC
Trigger: ACAGAATCCAAGAGCAATGAAGCCACCACAGGACGACAAGCTTCACTCAAATGTGAGGCCTCGGCAGTGCCTGCACCTGACTTTGAGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000333617.8
ENST00000473171.5
ENST00000490035.7
ENST00000498645.1
ENST00000539563.5
CDS-3UTR CAA 90 bp GGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCGCCGAGGAGACCTCGTaGGCAGCTTTGCACTCATAT +
Preference number: 5 (lower is better)
Translates to: GLPHLSLSLSLCLSLSVFAEETS*AALHSY
Trigger: ATATGAGTGCAAAGCTGCCAACGAGGTCTCCTCGGC...GAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp ATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTAGGACTAGGCTGGCATaGGTGACCCCCAGCTTGTTG +
Preference number: 5 (lower is better)
Translates to: INGLPHLSLSLSLCLSLSRTRLA*VTPSLL
Trigger: CAACAAGCTGGGGGTCACCAATGCCAGCCTAGTCCT...AGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp GGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCGTGAGAGCGAAAGACTaGAGCACACACGCACAGTGG +
Preference number: 5 (lower is better)
Translates to: GLPHLSLSLSLCLSLSVFVRAKD*STHAQW
Trigger: CCACTGTGCGTGTGTGCTCAAGTCTTTCGCTCTCAC...GAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS CCA 90 bp TCGGAGGCTGTATTCCAGAGAATGGCGTTTCTCCAGCTCAACCCGTaGGTCCAGAGACCACTTGTCATGTCCAGCAAAAATGATGCCAGA +
Preference number: 5 (lower is better)
Translates to: SEAVFQRMAFLQLNP*VQRPLVMSSKNDAR
Trigger: TCTGGCATCATTTTTGCTGGACATGACAAGTGGTCTCTGGACCCACGGGTTGAGCTGGAGAAACGCCATTCTCTGGAATACAGCCTCCGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000333617.8
ENST00000474851.1
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp GGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGCCTCACGGTGATGTaGTCCGTGCCTCGGTTAAAA +
Preference number: 5 (lower is better)
Translates to: GLPHLSLSLSLCLSLSVFCLTVM*SVPRLK
Trigger: TTTTAACCGAGGCACGGACAACATCACCGTGAGGCA...GAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000333617.8
ENST00000490035.7
CDS-3UTR CAA 90 bp GAAACCACAACCAACTCAGGGATGGAATCTGCGACTCTGGAGGATTCAAGAAGCCAGACCAGAGTCACGTaGCTGCCCTCATTCACAGTG +
Preference number: 5 (lower is better)
Translates to: ETTTNSGMESATLEDSRSQTRVT*LPSFTV
Trigger: CACTGTGAATGAGGGCAGCAACGTGACTCTGGTCTG...GCTTCTTGAATCCTCCAGAGTCGCAGATTCCATCCCTGAGTTGGTTGTGGTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp GGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCCACAGTGACCTTGACTaGTTTGACATCCGCCGAGGA +
Preference number: 5 (lower is better)
Translates to: GLPHLSLSLSLCLSLSVFHSDLD*FDIRRG
Trigger: TCCTCGGCGGATGTCAAACAAGTCAAGGTCACTGTG...GAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACACGCTCGCCGAGGCCTCACATTaGAGTGAAGCTTGTCGTCCT +
Preference number: 5 (lower is better)
Translates to: CTHGPFPWHALERDTHTLAEASH*SEACRP
Trigger: AGGACGACAAGCTTCACTCAAATGTGAGGCCTCGGC...GAGCGTGTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp CTCCTAGGTCACCTCGTCCACGTCATAATTCCTTATGCTGTTTGCTTACCCCATAGGACTAGGCTGGCATaGGTGACCCCCAGCTTGTTG +
Preference number: 5 (lower is better)
Translates to: LLGHLVHVIIPYAVCLPHRTRLA*VTPSLL
Trigger: CAACAAGCTGGGGGTCACCAATGCCAGCCTAGTCCT...ATGGGGTAAGCAAACAGCATAAGGAATTATGACGTGGACGAGGTGACCTAGGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TGCCTCTTTCCCCGCCATCTCCCCCAGCAACTTGTTACAGCCGCATCTCACAATAGATTCAATGATTTCTaGGTGTCAGTCCTCTGGCCC +
Preference number: 5 (lower is better)
Translates to: CLFPRHLPQQLVTAASHNRFNDF*VSVLWP
Trigger: GGGCCAGAGGACTGACACCAAGAAATCATTGAATCT...ATTGTGAGATGCGGCTGTAACAAGTTGCTGGGGGAGATGGCGGGGAAAGAGGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCCTGGTAGCTTGGGATaGCTGCAGCGTGCCATGAAG +
Preference number: 5 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSPGSLG*LQRAMK
Trigger: CTTCATGGCACGCTGCAGCAATCCCAAGCTACCAGG...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS TCA 90 bp ATGTCCAGCAAAAATGATGCCAGAACGGTTCAACCAGGCCACCTTTaGGTTCTTGTCTTCTACAACGCACCTGAGGATGGCTGTGTCCCC +
Preference number: 5 (lower is better)
Translates to: MSSKNDARTVQPGHL*VLVFYNAPEDGCVP
Trigger: GGGGACACAGCCATCCTCAGGTGCGTTGTAGAAGACAAGAACTCAAAGGTGGCCTGGTTGAACCGTTCTGGCATCATTTTTGCTGGACAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000474851.1
ENST00000490035.7
CDS TCA 90 bp GCTCAACCCGTGGGTCCAGAGACCACTTGTCATGTCCAGCAAAAATaGTGCCAGAACGGTTCAACCAGGCCACCTTTGAGTTCTTGTCTT +
Preference number: 5 (lower is better)
Translates to: AQPVGPETTCHVQQK*CQNGSTRPPLSSCL
Trigger: AAGACAAGAACTCAAAGGTGGCCTGGTTGAACCGTTCTGGCATCATTTTTGCTGGACATGACAAGTGGTCTCTGGACCCACGGGTTGAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000333617.8
ENST00000474851.1
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTGTGACCTTGACTTGTTaGACATCCGCCGAGGAGACC +
Preference number: 5 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSVTLTC*TSAEET
Trigger: GGTCTCCTCGGCGGATGTCAAACAAGTCAAGGTCAC...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTGCCGAGGCCTCACATTaGAGTGAAGCTTGTCGTCCT +
Preference number: 5 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSAEASH*SEACRP
Trigger: AGGACGACAAGCTTCACTCAAATGTGAGGCCTCGGC...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp CTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATCGACCCAGGTCCTTTTaGCTTGAAGTGCACGGTGGT +
Preference number: 5 (lower is better)
Translates to: LSLSLSLCLSLSVFCVTHRPRSF*LEVHGG
Trigger: ACCACCGTGCACTTCAAGCAAAAAGGACCTGGGTCG...ATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000333617.8
CDS-3UTR CAA 90 bp TGCCTCTTTCCCCGCCATCTCCCCCAGCAACTTGTTACAGCCGCATCTCACAATAGTTGCCCAGCAATTTaGGTTAAGGACCTAGATCAC +
Preference number: 5 (lower is better)
Translates to: CLFPRHLPQQLVTAASHNSCPAI*VKDLDH
Trigger: GTGATCTAGGTCCTTAACCAAAATTGCTGGGCAACT...ATTGTGAGATGCGGCTGTAACAAGTTGCTGGGGGAGATGGCGGGGAAAGAGGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TGCCTCTTTCCCCGCCATCTCCCCCAGCAACTTGTTACAGCCGCATCTCACAATGCGGGGTTTCAAACTTaGATTACCAAGGGACAAGAT +
Preference number: 5 (lower is better)
Translates to: CLFPRHLPQQLVTAASHNAGFQT*ITKGQD
Trigger: ATCTTGTCCCTTGGTAATCAAAGTTTGAAACCCCGC...ATTGTGAGATGCGGCTGTAACAAGTTGCTGGGGGAGATGGCGGGGAAAGAGGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp GGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTCTATTTCCCTTGCTTaGGGGTCGGGTGAGACAACT +
Preference number: 5 (lower is better)
Translates to: GLPHLSLSLSLCLSLSVFSISLA*GSGETT
Trigger: AGTTGTCTCACCCGACCCCAAAGCAAGGGAAATAGA...GAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp GAAACCACAACCAACTCAGGGATGGAATCTGCGACTCTGGAGGATTCAAGAAGCTTCCCTCTATTTCCCTaGCTTTGGGGTCGGGTGAGA +
Preference number: 5 (lower is better)
Translates to: ETTTNSGMESATLEDSRSFPLFP*LWGRVR
Trigger: TCTCACCCGACCCCAAAGCAAGGGAAATAGAGGGAA...GCTTCTTGAATCCTCCAGAGTCGCAGATTCCATCCCTGAGTTGGTTGTGGTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp ATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTTTCCCTCTATTTCCCTaGCTTTGGGGTCGGGTGAGA +
Preference number: 5 (lower is better)
Translates to: INGLPHLSLSLSLCLSLSFPLFP*LWGRVR
Trigger: TCTCACCCGACCCCAAAGCAAGGGAAATAGAGGGAA...AGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp GGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCGTACCAAGAAGACACTaGGGGGTTGATACAACAGGC +
Preference number: 5 (lower is better)
Translates to: GLPHLSLSLSLCLSLSVFVPRRH*GVDTTG
Trigger: GCCTGTTGTATCAACCCCCAAGTGTCTTCTTGGTAC...GAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp ATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTTAGGGAGCAGAACTaGGCCACAGTTCACCAGGAT +
Preference number: 5 (lower is better)
Translates to: INGLPHLSLSLSLCLSLSLREQN*ATVHQD
Trigger: ATCCTGGTGAACTGTGGCCAAGTTCTGCTCCCTAAG...AGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp CTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTGCCTCACGGTGATGTaGTCCGTGCCTCGGTTAAAA +
Preference number: 5 (lower is better)
Translates to: LSLSLSLCLSLSVFCVTHCLTVM*SVPRLK
Trigger: TTTTAACCGAGGCACGGACAACATCACCGTGAGGCA...ATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333617.8
ENST00000490035.7
CDS-3UTR CAA 90 bp GGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTACGATCAAGTAAACTaGGGAGGTCTTGGGCTCATG +
Preference number: 5 (lower is better)
Translates to: GLPHLSLSLSLCLSLSVFYDQVN*GGLGLM
Trigger: CATGAGCCCAAGACCTCCCAAGTTTACTTGATCGTA...GAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp GTAAAGCCCTGGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATTCAGACCAGAGTCACGTaGCTGCCCTCATTCACAGTG +
Preference number: 5 (lower is better)
Translates to: VKPWIVLILQEAPWVKVIQTRVT*LPSFTV
Trigger: CACTGTGAATGAGGGCAGCAACGTGACTCTGGTCTG...AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTATCTCCCCCAGCAACTaGTTACAGCCGCATCTCACA +
Preference number: 5 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSISPSN*LQPHLT
Trigger: TGTGAGATGCGGCTGTAACAAGTTGCTGGGGGAGAT...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp GACACTTGGGGGTTGATACAACAGGCACATGAGCCCTTAAAACTCCTTCCTGTTATCTCCCCCAGCAACTaGTTACAGCCGCATCTCACA +
Preference number: 5 (lower is better)
Translates to: DTWGLIQQAHEPLKLLPVISPSN*LQPHLT
Trigger: TGTGAGATGCGGCTGTAACAAGTTGCTGGGGGAGAT...AACAGGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATCAACCCCCAAGTGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp GGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCATTATTTCCAACCAGTaGGTGCTTTTCAGTGCGGGG +
Preference number: 5 (lower is better)
Translates to: GLPHLSLSLSLCLSLSVFIISNQ*VLFSAG
Trigger: CCCCGCACTGAAAAGCACCAACTGGTTGGAAATAAT...GAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp GAAACCACAACCAACTCAGGGATGGAATCTGCGACTCTGGAGGATTCAAGAAGCCATGAAAACGGGGAGTaGTCCCATGGACAGGTCATT +
Preference number: 5 (lower is better)
Translates to: ETTTNSGMESATLEDSRSHENGE*SHGQVI
Trigger: AATGACCTGTCCATGGGACAACTCCCCGTTTTCATG...GCTTCTTGAATCCTCCAGAGTCGCAGATTCCATCCCTGAGTTGGTTGTGGTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS CCA 90 bp TCTGGAGAACACTTCAGAAGATATCTTTTCACTTACAGTTCCACATaGCTGGGGGAGCCTCACAATCATGGCAGAAGGCAAGGAGGAGCA +
Preference number: 5 (lower is better)
Translates to: SGEHFRRYLFTYSST*LGEPHNHGRRQGGA
Trigger: TGCTCCTCCTTGCCTTCTGCCATGATTGTGAGGCTCCCCCAGCCATGTGGAACTGTAAGTGAAAAGATATCTTCTGAAGTGTTCTCCAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000474851.1
CDS-3UTR CAA 90 bp CTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTCAGACCAGAGTCACGTaGCTGCCCTCATTCACAGTG +
Preference number: 5 (lower is better)
Translates to: LSLSLCLSLSVFCVTHFCQTRVT*LPSFTV
Trigger: CACTGTGAATGAGGGCAGCAACGTGACTCTGGTCTG...ACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TGCTGCTCATTTTCACAGTGGAGCAGGGCCTACCCTGTTAAATGCCAGGAAATAGTGGGTCTGCTTCCTTaGGCTAAGGCAACCTCATAT +
Preference number: 5 (lower is better)
Translates to: CCSFSQWSRAYPVKCQEIVGLLP*AKATSY
Trigger: ATATGAGGTTGCCTTAGCCAAAGGAAGCAGACCCAC...TATTTCCTGGCATTTAACAGGGTAGGCCCTGCTCCACTGTGAAAATGAGCAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS TCA 90 bp GATCAAGTAAACTTGGGAGGTCTTGGGCTCATGCTGTGTCTGAACTaGGCAAGTGTAGGAACCCTCATCATAGACATCCACCTTCTGGAT +
Preference number: 5 (lower is better)
Translates to: DQVNLGGLGLMLCLN*ASVGTLIIDIHLLD
Trigger: ATCCAGAAGGTGGATGTCTATGATGAGGGTTCCTACACTTGCTCAGTTCAGACACAGCATGAGCCCAAGACCTCCCAAGTTTACTTGATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000333617.8
ENST00000474851.1
ENST00000490035.7
ENST00000539563.5
CDS CCA 90 bp AGATCTTTGGTGGGACTTGTACGATCAAGTAAACTTGGGAGGTCTTaGGCTCATGCTGTGTCTGAACTGAGCAAGTGTAGGAACCCTCAT +
Preference number: 5 (lower is better)
Translates to: RSLVGLVRSSKLGRS*AHAVSELSKCRNPH
Trigger: ATGAGGGTTCCTACACTTGCTCAGTTCAGACACAGCATGAGCCCAAGACCTCCCAAGTTTACTTGATCGTACAAGTCCCACCAAAGATCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000333617.8
ENST00000474851.1
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp CTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTACGATCAAGTAAACTaGGGAGGTCTTGGGCTCATG +
Preference number: 5 (lower is better)
Translates to: LSLSLSLCLSLSVFCVTHYDQVN*GGLGLM
Trigger: CATGAGCCCAAGACCTCCCAAGTTTACTTGATCGTA...ATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp CTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATACATCCGAGGAGATATaGGAGATCTTTGGTGGGACT +
Preference number: 5 (lower is better)
Translates to: LSLSLSLCLSLSVFCVTHTSEEI*EIFGGT
Trigger: AGTCCCACCAAAGATCTCCAATATCTCCTCGGATGT...ATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp GTAAAGCCCTGGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATTACCTCGTTGGCAGCTTaGCACTCATATTTGCCTGAC +
Preference number: 5 (lower is better)
Translates to: VKPWIVLILQEAPWVKVITSLAA*HSYLPD
Trigger: GTCAGGCAAATATGAGTGCAAAGCTGCCAACGAGGT...AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp AGTCTATGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACACCTCGTTGGCAGCTTaGCACTCATATTTGCCTGAC +
Preference number: 5 (lower is better)
Translates to: SLCTHGPFPWHALERDTHTSLAA*HSYLPD
Trigger: GTCAGGCAAATATGAGTGCAAAGCTGCCAACGAGGT...GTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACATAGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp CTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTCACAGTGACCTTGACTaGTTTGACATCCGCCGAGGA +
Preference number: 5 (lower is better)
Translates to: LSLSLCLSLSVFCVTHFCHSDLD*FDIRRG
Trigger: TCCTCGGCGGATGTCAAACAAGTCAAGGTCACTGTG...ACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp GACACTTGGGGGTTGATACAACAGGCACATGAGCCCTTAAAACTCCTTCCTGTTGTGGCTTCATTGCTCTaGGATTCTGTGATAGTGGGA +
Preference number: 5 (lower is better)
Translates to: DTWGLIQQAHEPLKLLPVVASLL*DSVIVG
Trigger: TCCCACTATCACAGAATCCAAGAGCAATGAAGCCAC...AACAGGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATCAACCCCCAAGTGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TGCTGCTCATTTTCACAGTGGAGCAGGGCCTACCCTGTTAAATGCCAGGAAATATTCTTTCACTGGGAGTaGACACTTGGAGACCTTCCT +
Preference number: 5 (lower is better)
Translates to: CCSFSQWSRAYPVKCQEIFFHWE*TLGDLP
Trigger: AGGAAGGTCTCCAAGTGTCAACTCCCAGTGAAAGAA...TATTTCCTGGCATTTAACAGGGTAGGCCCTGCTCCACTGTGAAAATGAGCAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TGCTGCTCATTTTCACAGTGGAGCAGGGCCTACCCTGTTAAATGCCAGGAAATAAGAAGTCTGTCTGACTaGGAAGAGAAGGCAAAGGTC +
Preference number: 5 (lower is better)
Translates to: CCSFSQWSRAYPVKCQEIRSLSD*EEKAKV
Trigger: GACCTTTGCCTTCTCTTCCAAGTCAGACAGACTTCT...TATTTCCTGGCATTTAACAGGGTAGGCCCTGCTCCACTGTGAAAATGAGCAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TGCCTCTTTCCCCGCCATCTCCCCCAGCAACTTGTTACAGCCGCATCTCACAATTTTCCTAAATTTTGGTaGGCGACATTTGAACAGCAT +
Preference number: 5 (lower is better)
Translates to: CLFPRHLPQQLVTAASHNFPKFW*ATFEQH
Trigger: ATGCTGTTCAAATGTCGCCAACCAAAATTTAGGAAA...ATTGTGAGATGCGGCTGTAACAAGTTGCTGGGGGAGATGGCGGGGAAAGAGGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp CTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTGTCTTAGGGAGCAGAACTaGGCCACAGTTCACCAGGAT +
Preference number: 5 (lower is better)
Translates to: LSLSLSLSLCILCDAFLCLREQN*ATVHQD
Trigger: ATCCTGGTGAACTGTGGCCAAGTTCTGCTCCCTAAG...ACACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS GCA 90 bp CAAGTCACATCTTACGTGGATGGCAGCAGGCAAAGGGAGAGCTCATaGAGGGAAACTCCCCTTTATAGAACTATCAGATCTCATGAAACT +
Preference number: 5 (lower is better)
Translates to: QVTSYVDGSRQRESS*RETPLYRTIRSHET
Trigger: AGTTTCATGAGATCTGATAGTTCTATAAAGGGGAGTTTCCCTGCATGAGCTCTCCCTTTGCCTGCTGCCATCCACGTAAGATGTGACTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000474851.1
CDS-3UTR CAA 90 bp CTGAGGGAACAAACGGTGCTGACATGGCAGACATTTATTTCAATGGAGAAGTTCGCCACCTTTGAGTTCTaGTCTTCTACAACGCACCTG +
Preference number: 5 (lower is better)
Translates to: LREQTVLTWQTFISMEKFATFEF*SSTTHL
Trigger: CAGGTGCGTTGTAGAAGACAAGAACTCAAAGGTGGC...GAACTTCTCCATTGAAATAAATGTCTGCCATGTCAGCACCGTTTGTTCCCTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp GAAACCACAACCAACTCAGGGATGGAATCTGCGACTCTGGAGGATTCAAGAAGCGATCTTTGGTGGGACTaGTACGATCAAGTAAACTTG +
Preference number: 5 (lower is better)
Translates to: ETTTNSGMESATLEDSRSDLWWD*YDQVNL
Trigger: CAAGTTTACTTGATCGTACAAGTCCCACCAAAGATC...GCTTCTTGAATCCTCCAGAGTCGCAGATTCCATCCCTGAGTTGGTTGTGGTTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp AGGTTATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGGTTCAGGACGGCCATaGGCCATGCAGACCAGAGTC +
Preference number: 5 (lower is better)
Translates to: RLWKYKHQRQDLIFFPTDGSGRP*AMQTRV
Trigger: GACTCTGGTCTGCATGGCCAATGGCCGTCCTGAACC...ATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATAACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TATTTTTACAGCATCCAGATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACAGGACTAGGCTGGCATaGGTGACCCCCAGCTTGTTG +
Preference number: 5 (lower is better)
Translates to: YFYSIQMSLVWCSLYTAYRTRLA*VTPSLL
Trigger: CAACAAGCTGGGGGTCACCAATGCCAGCCTAGTCCT...GTATGCTGTGTAAAGACTACACCACACTAAGGACATCTGGATGCTGTAAAAATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp CTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATCAAAGGAAAGGGTTCTaGTTTGGTCTCTCTGTGACT +
Preference number: 5 (lower is better)
Translates to: LSLSLSLCLSLSVFCVTHQRKGF*FGLSVT
Trigger: AGTCACAGAGAGACCAAACAAGAACCCTTTCCTTTG...ATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000490035.7
CDS-3UTR CAA 90 bp AATATGGCTCACCTTCCCTATATTTTACTAGCTACCTTCTTGGATGAGAATTTGGGAGGACTCTGCTCCTaGCCTCTTTCCCCGCCATCT +
Preference number: 5 (lower is better)
Translates to: NMAHLPYILLATFLDENLGGLCS*PLSPPS
Trigger: AGATGGCGGGGAAAGAGGCAAGGAGCAGAGTCCTCC...CAAATTCTCATCCAAGAAGGTAGCTAGTAAAATATAGGGAAGGTGAGCCATATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp CTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTGTGGGTCTGCTTCCTTaGGCTAAGGCAACCTCATAT +
Preference number: 5 (lower is better)
Translates to: LSLSLCLSLSVFCVTHFCVGLLP*AKATSY
Trigger: ATATGAGGTTGCCTTAGCCAAAGGAAGCAGACCCAC...ACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp CTCCTAGGTCACCTCGTCCACGTCATAATTCCTTATGCTGTTTGCTTACCCCATGATCTTTGGTGGGACTaGTACGATCAAGTAAACTTG +
Preference number: 5 (lower is better)
Translates to: LLGHLVHVIIPYAVCLPHDLWWD*YDQVNL
Trigger: CAAGTTTACTTGATCGTACAAGTCCCACCAAAGATC...ATGGGGTAAGCAAACAGCATAAGGAATTATGACGTGGACGAGGTGACCTAGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp CTCCTAGGTCACCTCGTCCACGTCATAATTCCTTATGCTGTTTGCTTACCCCATAGATATTGGAGATCTTaGGTGGGACTTGTACGATCA +
Preference number: 5 (lower is better)
Translates to: LLGHLVHVIIPYAVCLPHRYWRS*VGLVRS
Trigger: TGATCGTACAAGTCCCACCAAAGATCTCCAATATCT...ATGGGGTAAGCAAACAGCATAAGGAATTATGACGTGGACGAGGTGACCTAGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp CCCCCTTCATGTATAAACACACAAAGTTGTGAAATAAACGGTCTCCCCCATCTCACATCCGAGGAGATATaGGAGATCTTTGGTGGGACT +
Preference number: 5 (lower is better)
Translates to: PPSCINTQSCEINGLPHLTSEEI*EIFGGT
Trigger: AGTCCCACCAAAGATCTCCAATATCTCCTCGGATGT...GAGATGGGGGAGACCGTTTATTTCACAACTTTGTGTGTTTATACATGAAGGGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TATTTTTACAGCATCCAGATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACGCCGAGGAGACCTCGTaGGCAGCTTTGCACTCATAT +
Preference number: 5 (lower is better)
Translates to: YFYSIQMSLVWCSLYTAYAEETS*AALHSY
Trigger: ATATGAGTGCAAAGCTGCCAACGAGGTCTCCTCGGC...GTATGCTGTGTAAAGACTACACCACACTAAGGACATCTGGATGCTGTAAAAATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp CTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTGTGTGGCTTCATTGCTCTaGGATTCTGTGATAGTGGGA +
Preference number: 5 (lower is better)
Translates to: LSLSLSLSLCILCDAFLCVASLL*DSVIVG
Trigger: TCCCACTATCACAGAATCCAAGAGCAATGAAGCCAC...ACACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TTTTGGTTGGCGACATTTGAACAGCATAGCTACATGCAAATGAGAATAGTTTACTGCTCCTCAGTGACGTaGGTCACCGTCAGGGAAGAC +
Preference number: 5 (lower is better)
Translates to: FWLATFEQHSYMQMRIVYCSSVT*VTVRED
Trigger: GTCTTCCCTGACGGTGACCAACGTCACTGAGGAGCA...GTAAACTATTCTCATTTGCATGTAGCTATGCTGTTCAAATGTCGCCAACCAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAATTGGTGACCCCCAGCTaGTTGGCAGCCACACAGGTG +
Preference number: 5 (lower is better)
Translates to: YGNINTKGKTLFSSPQMKLVTPS*LAATQV
Trigger: CACCTGTGTGGCTGCCAACAAGCTGGGGGTCACCAA...TTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp ATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACATTTGCTTAGTAGATATATTGGTGACCCCCAGCTaGTTGGCAGCCACACAGGTG +
Preference number: 5 (lower is better)
Translates to: MSLVWCSLYTAYICLVDILVTPS*LAATQV
Trigger: CACCTGTGTGGCTGCCAACAAGCTGGGGGTCACCAA...TATATCTACTAAGCAAATGTATGCTGTGTAAAGACTACACCACACTAAGGACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp CTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTGTGTGGGTAAAACACGTTaGAAAAGGACTAGGCTGGCA +
Preference number: 5 (lower is better)
Translates to: LSLSLSLSLCILCDAFLCVGKTR*KRTRLA
Trigger: TGCCAGCCTAGTCCTTTTCAAACGTGTTTTACCCAC...ACACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000333617.8
CDS-3UTR CAA 90 bp CTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTACATGGACCATTCCCTaGGCATGCTTTAGAGAGAGA +
Preference number: 5 (lower is better)
Translates to: LSLSLCLSLSVFCVTHFCTWTIP*ACFRER
Trigger: TCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGT...ACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAAAAGGAGGACTCTGCTCCTaGCCTCTTTCCCCGCCATCT +
Preference number: 5 (lower is better)
Translates to: WKYKHQRQDLIFFPTDEKGGLCS*PLSPPS
Trigger: AGATGGCGGGGAAAGAGGCAAGGAGCAGAGTCCTCC...TTTTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp GTAAAGCCCTGGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATTAGTTGCCCAGCAATTTaGGTTAAGGACCTAGATCAC +
Preference number: 5 (lower is better)
Translates to: VKPWIVLILQEAPWVKVISCPAI*VKDLDH
Trigger: GTGATCTAGGTCCTTAACCAAAATTGCTGGGCAACT...AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp GAAACCACAACCAACTCAGGGATGGAATCTGCGACTCTGGAGGATTCAAGAAGCGAAACAGATTTTTGTTaGGTCCTCCAAGAACGTGAA +
Preference number: 5 (lower is better)
Translates to: ETTTNSGMESATLEDSRSETDFC*VLQERE
Trigger: TTCACGTTCTTGGAGGACCAAACAAAAATCTGTTTC...GCTTCTTGAATCCTCCAGAGTCGCAGATTCCATCCCTGAGTTGGTTGTGGTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TTTTGGTTGGCGACATTTGAACAGCATAGCTACATGCAAATGAGAATAGTTTACCCTGGTAGCTTGGGATaGCTGCAGCGTGCCATGAAG +
Preference number: 5 (lower is better)
Translates to: FWLATFEQHSYMQMRIVYPGSLG*LQRAMK
Trigger: CTTCATGGCACGCTGCAGCAATCCCAAGCTACCAGG...GTAAACTATTCTCATTTGCATGTAGCTATGCTGTTCAAATGTCGCCAACCAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp AGGTTATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGTGACCTTGACTTGTTaGACATCCGCCGAGGAGACC +
Preference number: 5 (lower is better)
Translates to: RLWKYKHQRQDLIFFPTDVTLTC*TSAEET
Trigger: GGTCTCCTCGGCGGATGTCAAACAAGTCAAGGTCAC...ATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATAACCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TTTTGGTTGGCGACATTTGAACAGCATAGCTACATGCAAATGAGAATAGTTTACGCCGAGGCCTCACATTaGAGTGAAGCTTGTCGTCCT +
Preference number: 5 (lower is better)
Translates to: FWLATFEQHSYMQMRIVYAEASH*SEACRP
Trigger: AGGACGACAAGCTTCACTCAAATGTGAGGCCTCGGC...GTAAACTATTCTCATTTGCATGTAGCTATGCTGTTCAAATGTCGCCAACCAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TGCTGCTCATTTTCACAGTGGAGCAGGGCCTACCCTGTTAAATGCCAGGAAATATTAATCTCAAGGCCATaGGCACTATTTATCCTAGTG +
Preference number: 5 (lower is better)
Translates to: CCSFSQWSRAYPVKCQEILISRP*ALFILV
Trigger: CACTAGGATAAATAGTGCCAATGGCCTTGAGATTAA...TATTTCCTGGCATTTAACAGGGTAGGCCCTGCTCCACTGTGAAAATGAGCAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAATGCTCCTCAGTGACGTaGGTCACCGTCAGGGAAGAC +
Preference number: 5 (lower is better)
Translates to: YGNINTKGKTLFSSPQMKCSSVT*VTVRED
Trigger: GTCTTCCCTGACGGTGACCAACGTCACTGAGGAGCA...TTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp ATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACATTTGCTTAGTAGATATATGCTCCTCAGTGACGTaGGTCACCGTCAGGGAAGAC +
Preference number: 5 (lower is better)
Translates to: MSLVWCSLYTAYICLVDICSSVT*VTVRED
Trigger: GTCTTCCCTGACGGTGACCAACGTCACTGAGGAGCA...TATATCTACTAAGCAAATGTATGCTGTGTAAAGACTACACCACACTAAGGACAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp AGGTTATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATAGCGCAGAGCGGGCTTaGCCAGTTTATGGTCCTTTC +
Preference number: 5 (lower is better)
Translates to: RLWKYKHQRQDLIFFPTDSAERA*PVYGPF
Trigger: GAAAGGACCATAAACTGGCAAAGCCCGCTCTGCGCT...ATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATAACCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000490035.7
CDS-3UTR CAA 90 bp AGGTTATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGTGAGAGCGAAAGACTaGAGCACACACGCACAGTGG +
Preference number: 5 (lower is better)
Translates to: RLWKYKHQRQDLIFFPTDVRAKD*STHAQW
Trigger: CCACTGTGCGTGTGTGCTCAAGTCTTTCGCTCTCAC...ATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATAACCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TGCTGCTCATTTTCACAGTGGAGCAGGGCCTACCCTGTTAAATGCCAGGAAATAAATTCCTTATGCTGTTaGCTTACCCCATCGATAGTA +
Preference number: 5 (lower is better)
Translates to: CCSFSQWSRAYPVKCQEINSLCC*LTPSIV
Trigger: TACTATCGATGGGGTAAGCAAACAGCATAAGGAATT...TATTTCCTGGCATTTAACAGGGTAGGCCCTGCTCCACTGTGAAAATGAGCAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TGTGAAATAAACGGTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTTTGCAGAAAGTTCACTaGTTTCCTGAAATCATCTCC +
Preference number: 5 (lower is better)
Translates to: CEINGLPHLSLSLSLCLSLQKVH*FPEIIS
Trigger: GGAGATGATTTCAGGAAACAAGTGAACTTTCTGCAA...AGAGAGACAGAGAGAGAGAGAGAGAGAGAGATGGGGGAGACCGTTTATTTCACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp GACACTTGGGGGTTGATACAACAGGCACATGAGCCCTTAAAACTCCTTCCTGTTGGAAAGTTAAATGACTaGCCAATGTCTCACAGCTTT +
Preference number: 5 (lower is better)
Translates to: DTWGLIQQAHEPLKLLPVGKLND*PMSHSF
Trigger: AAAGCTGTGAGACATTGGCAAGTCATTTAACTTTCC...AACAGGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATCAACCCCCAAGTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp CTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATCCTATAATTCAAGCTTaGGGAAACTTATCCCATGAG +
Preference number: 5 (lower is better)
Translates to: LSLSLSLCLSLSVFCVTHPIIQA*GNLSHE
Trigger: CTCATGGGATAAGTTTCCCAAAGCTTGAATTATAGG...ATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp AGTCTATGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACTTGCAAGAAGCATATTaGTACTGTGCCTGGCTTTAC +
Preference number: 5 (lower is better)
Translates to: SLCTHGPFPWHALERDTHLQEAY*YCAWLY
Trigger: GTAAAGCCAGGCACAGTACAAATATGCTTCTTGCAA...GTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACATAGACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TATTTTTACAGCATCCAGATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACGCCACCTTTGAGTTCTaGTCTTCTACAACGCACCTG +
Preference number: 5 (lower is better)
Translates to: YFYSIQMSLVWCSLYTAYATFEF*SSTTHL
Trigger: CAGGTGCGTTGTAGAAGACAAGAACTCAAAGGTGGC...GTATGCTGTGTAAAGACTACACCACACTAAGGACATCTGGATGCTGTAAAAATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp ATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACATTTGCTTAGTAGATATAGCCGAGGAGACCTCGTaGGCAGCTTTGCACTCATAT +
Preference number: 5 (lower is better)
Translates to: MSLVWCSLYTAYICLVDIAEETS*AALHSY
Trigger: ATATGAGTGCAAAGCTGCCAACGAGGTCTCCTCGGC...TATATCTACTAAGCAAATGTATGCTGTGTAAAGACTACACCACACTAAGGACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp AATATGGCTCACCTTCCCTATATTTTACTAGCTACCTTCTTGGATGAGAATTTGCACAGTGACCTTGACTaGTTTGACATCCGCCGAGGA +
Preference number: 5 (lower is better)
Translates to: NMAHLPYILLATFLDENLHSDLD*FDIRRG
Trigger: TCCTCGGCGGATGTCAAACAAGTCAAGGTCACTGTG...CAAATTCTCATCCAAGAAGGTAGCTAGTAAAATATAGGGAAGGTGAGCCATATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp GTAAAGCCCTGGATAGTTCTCATTCTTCAGGAAGCACCCTGGGTCAAAGTCATTTTAATCTCAAGGCCATaGGCACTATTTATCCTAGTG +
Preference number: 5 (lower is better)
Translates to: VKPWIVLILQEAPWVKVILISRP*ALFILV
Trigger: CACTAGGATAAATAGTGCCAATGGCCTTGAGATTAA...AATGACTTTGACCCAGGGTGCTTCCTGAAGAATGAGAACTATCCAGGGCTTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp GACACTTGGGGGTTGATACAACAGGCACATGAGCCCTTAAAACTCCTTCCTGTTTTGACTTTTTCTGCCTaGCTCACTTTCACTGTATTT +
Preference number: 5 (lower is better)
Translates to: DTWGLIQQAHEPLKLLPVLTFSA*LTFTVF
Trigger: AAATACAGTGAAAGTGAGCAAGGCAGAAAAAGTCAA...AACAGGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATCAACCCCCAAGTGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp AATATGGCTCACCTTCCCTATATTTTACTAGCTACCTTCTTGGATGAGAATTTGGAGCCTGGGCATCTGTaGACTTTTTCTGCCTTGCTC +
Preference number: 5 (lower is better)
Translates to: NMAHLPYILLATFLDENLEPGHL*TFSALL
Trigger: GAGCAAGGCAGAAAAAGTCAACAGATGCCCAGGCTC...CAAATTCTCATCCAAGAAGGTAGCTAGTAAAATATAGGGAAGGTGAGCCATATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp GACACTTGGGGGTTGATACAACAGGCACATGAGCCCTTAAAACTCCTTCCTGTTTTCTTGGATGAGAATTaGTTTTCTCTCCTATGTCAG +
Preference number: 5 (lower is better)
Translates to: DTWGLIQQAHEPLKLLPVFLDEN*FSLLCQ
Trigger: CTGACATAGGAGAGAAAACAAATTCTCATCCAAGAA...AACAGGAAGGAGTTTTAAGGGCTCATGTGCCTGTTGTATCAACCCCCAAGTGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp CAAACAAGACTTTTTATCCAGCAAGGCAAAACCTTTGCTCAACAATTGCACAGAGTACCAAGAAGACACTaGGGGGTTGATACAACAGGC +
Preference number: 5 (lower is better)
Translates to: QTRLFIQQGKTFAQQLHRVPRRH*GVDTTG
Trigger: GCCTGTTGTATCAACCCCCAAGTGTCTTCTTGGTAC...TCTGTGCAATTGTTGAGCAAAGGTTTTGCCTTGCTGGATAAAAAGTCTTGTTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp CTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTGTTTGCAAGAAGCATATTaGTACTGTGCCTGGCTTTAC +
Preference number: 5 (lower is better)
Translates to: LSLSLSLSLCILCDAFLCLQEAY*YCAWLY
Trigger: GTAAAGCCAGGCACAGTACAAATATGCTTCTTGCAA...ACACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS GCA 90 bp TTCAAGGATCCCTGCCTTTCTTTTTCTTCTAAGAGAACCGCCACCTaGACAGTTTCTGGAGAACACTTCAGAAGATATCTTTTCACTTAC +
Preference number: 5 (lower is better)
Translates to: FKDPCLSFSSKRTAT*TVSGEHFRRYLFTY
Trigger: GTAAGTGAAAAGATATCTTCTGAAGTGTTCTCCAGAAACTGTGCAGGTGGCGGTTCTCTTAGAAGAAAAAGAAAGGCAGGGATCCTTGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000474851.1
CDS-3UTR CAA 90 bp TATTTTTACAGCATCCAGATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACGTGGCTTCATTGCTCTaGGATTCTGTGATAGTGGGA +
Preference number: 5 (lower is better)
Translates to: YFYSIQMSLVWCSLYTAYVASLL*DSVIVG
Trigger: TCCCACTATCACAGAATCCAAGAGCAATGAAGCCAC...GTATGCTGTGTAAAGACTACACCACACTAAGGACATCTGGATGCTGTAAAAATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp CTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTTTAATCTCAAGGCCATaGGCACTATTTATCCTAGTG +
Preference number: 5 (lower is better)
Translates to: LSLSLCLSLSVFCVTHFCLISRP*ALFILV
Trigger: CACTAGGATAAATAGTGCCAATGGCCTTGAGATTAA...ACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAAAACCAGGTCCTTTTTGCTaGAAGTGCACGGTGGTACCA +
Preference number: 5 (lower is better)
Translates to: WKYKHQRQDLIFFPTDEKPGPFC*KCTVVP
Trigger: TGGTACCACCGTGCACTTCAAGCAAAAAGGACCTGG...TTTTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000333617.8
CDS-3UTR CAA 90 bp TTTTGGTTGGCGACATTTGAACAGCATAGCTACATGCAAATGAGAATAGTTTACTCTATTTCCCTTGCTTaGGGGTCGGGTGAGACAACT +
Preference number: 5 (lower is better)
Translates to: FWLATFEQHSYMQMRIVYSISLA*GSGETT
Trigger: AGTTGTCTCACCCGACCCCAAAGCAAGGGAAATAGA...GTAAACTATTCTCATTTGCATGTAGCTATGCTGTTCAAATGTCGCCAACCAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp AGGTTATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAGACACTTGGGGGTaGATACAACAGGCACATGAG +
Preference number: 5 (lower is better)
Translates to: RLWKYKHQRQDLIFFPTDEDTWG*IQQAHE
Trigger: CTCATGTGCCTGTTGTATCAACCCCCAAGTGTCTTC...ATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATAACCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TATATTGCACAATTTCTTAGAATCCAGATGGCAAGCTTTCCCACTGCTTTTGTTGAAGACACTTGGGGGTaGATACAACAGGCACATGAG +
Preference number: 5 (lower is better)
Translates to: YIAQFLRIQMASFPTAFVEDTWG*IQQAHE
Trigger: CTCATGTGCCTGTTGTATCAACCCCCAAGTGTCTTC...AACAAAAGCAGTGGGAAAGCTTGCCATCTGGATTCTAAGAAATTGTGCAATATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp AGTCTATGTACACATGGACCATTCCCTTGGCATGCTTTAGAGAGAGACACACACATGGGTTTTCTTCACTaGCAAGAAGCATATTTGTAC +
Preference number: 5 (lower is better)
Translates to: SLCTHGPFPWHALERDTHMGFLH*QEAYLY
Trigger: GTACAAATATGCTTCTTGCAAGTGAAGAAAACCCAT...GTGTGTGTCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGTGTACATAGACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp GTGACTGCCTCTTCAATTTTTGGGGAATGCTTATTATTAAAGATGATACCCTTTGCCACCTTTGAGTTCTaGTCTTCTACAACGCACCTG +
Preference number: 5 (lower is better)
Translates to: VTASSIFGECLLLKMIPFATFEF*SSTTHL
Trigger: CAGGTGCGTTGTAGAAGACAAGAACTCAAAGGTGGC...AAAGGGTATCATCTTTAATAATAAGCATTCCCCAAAAATTGAAGAGGCAGTCAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TGCGGGGTTTCAAACTTTGATTACCAAGGGACAAGATTCTTGAAGGAATTTATTTACGATCAAGTAAACTaGGGAGGTCTTGGGCTCATG +
Preference number: 5 (lower is better)
Translates to: CGVSNFDYQGTRFLKEFIYDQVN*GGLGLM
Trigger: CATGAGCCCAAGACCTCCCAAGTTTACTTGATCGTA...AATAAATTCCTTCAAGAATCTTGTCCCTTGGTAATCAAAGTTTGAAACCCCGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp ATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACATTTGCTTAGTAGATATAACCTCGTTGGCAGCTTaGCACTCATATTTGCCTGAC +
Preference number: 5 (lower is better)
Translates to: MSLVWCSLYTAYICLVDITSLAA*HSYLPD
Trigger: GTCAGGCAAATATGAGTGCAAAGCTGCCAACGAGGT...TATATCTACTAAGCAAATGTATGCTGTGTAAAGACTACACCACACTAAGGACAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp ATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACATTTGCTTAGTAGATATAGGTGGTACCAATTTCTaGAATGGGGTGGGGGATTGT +
Preference number: 5 (lower is better)
Translates to: MSLVWCSLYTAYICLVDIGGTNF*NGVGDC
Trigger: ACAATCCCCCACCCCATTCAAGAAATTGGTACCACC...TATATCTACTAAGCAAATGTATGCTGTGTAAAGACTACACCACACTAAGGACAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000333617.8
CDS-3UTR CAA 90 bp TATATTGCACAATTTCTTAGAATCCAGATGGCAAGCTTTCCCACTGCTTTTGTTTTCTTTCACTGGGAGTaGACACTTGGAGACCTTCCT +
Preference number: 5 (lower is better)
Translates to: YIAQFLRIQMASFPTAFVFFHWE*TLGDLP
Trigger: AGGAAGGTCTCCAAGTGTCAACTCCCAGTGAAAGAA...AACAAAAGCAGTGGGAAAGCTTGCCATCTGGATTCTAAGAAATTGTGCAATATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TTTTGGTTGGCGACATTTGAACAGCATAGCTACATGCAAATGAGAATAGTTTACATTATTTCCAACCAGTaGGTGCTTTTCAGTGCGGGG +
Preference number: 5 (lower is better)
Translates to: FWLATFEQHSYMQMRIVYIISNQ*VLFSAG
Trigger: CCCCGCACTGAAAAGCACCAACTGGTTGGAAATAAT...GTAAACTATTCTCATTTGCATGTAGCTATGCTGTTCAAATGTCGCCAACCAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TGCGGGGTTTCAAACTTTGATTACCAAGGGACAAGATTCTTGAAGGAATTTATTAGAAGTCTGTCTGACTaGGAAGAGAAGGCAAAGGTC +
Preference number: 5 (lower is better)
Translates to: CGVSNFDYQGTRFLKEFIRSLSD*EEKAKV
Trigger: GACCTTTGCCTTCTCTTCCAAGTCAGACAGACTTCT...AATAAATTCCTTCAAGAATCTTGTCCCTTGGTAATCAAAGTTTGAAACCCCGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAAAACATGAAAACGGGGAGTaGTCCCATGGACAGGTCATT +
Preference number: 5 (lower is better)
Translates to: WKYKHQRQDLIFFPTDEKHENGE*SHGQVI
Trigger: AATGACCTGTCCATGGGACAACTCCCCGTTTTCATG...TTTTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp CTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTATTCTGTGTGACGCATTTTTGTATGGGTTTTCTTCACTaGCAAGAAGCATATTTGTAC +
Preference number: 5 (lower is better)
Translates to: LSLSLCLSLSVFCVTHFCMGFLH*QEAYLY
Trigger: GTACAAATATGCTTCTTGCAAGTGAAGAAAACCCAT...ACAAAAATGCGTCACACAGAATACAGAGAGAGAGAGACAGAGAGAGAGAGAGAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TATTTTTACAGCATCCAGATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACAGATATTGGAGATCTTaGGTGGGACTTGTACGATCA +
Preference number: 5 (lower is better)
Translates to: YFYSIQMSLVWCSLYTAYRYWRS*VGLVRS
Trigger: TGATCGTACAAGTCCCACCAAAGATCTCCAATATCT...GTATGCTGTGTAAAGACTACACCACACTAAGGACATCTGGATGCTGTAAAAATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp GTGACTGCCTCTTCAATTTTTGGGGAATGCTTATTATTAAAGATGATACCCTTTACATGGACCATTCCCTaGGCATGCTTTAGAGAGAGA +
Preference number: 5 (lower is better)
Translates to: VTASSIFGECLLLKMIPFTWTIP*ACFRER
Trigger: TCTCTCTCTAAAGCATGCCAAGGGAATGGTCCATGT...AAAGGGTATCATCTTTAATAATAAGCATTCCCCAAAAATTGAAGAGGCAGTCAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAAAGATTCAATGATTTCTaGGTGTCAGTCCTCTGGCCC +
Preference number: 5 (lower is better)
Translates to: YGNINTKGKTLFSSPQMKRFNDF*VSVLWP
Trigger: GGGCCAGAGGACTGACACCAAGAAATCATTGAATCT...TTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp AGGTTATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGCGGGGTTTCAAACTTaGATTACCAAGGGACAAGAT +
Preference number: 5 (lower is better)
Translates to: RLWKYKHQRQDLIFFPTDAGFQT*ITKGQD
Trigger: ATCTTGTCCCTTGGTAATCAAAGTTTGAAACCCCGC...ATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATAACCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TATATTGCACAATTTCTTAGAATCCAGATGGCAAGCTTTCCCACTGCTTTTGTTACTGTAATGAGGTACTaGGCCCAGGATGACAGAAAA +
Preference number: 5 (lower is better)
Translates to: YIAQFLRIQMASFPTAFVTVMRY*AQDDRK
Trigger: TTTTCTGTCATCCTGGGCCAAGTACCTCATTACAGT...AACAAAAGCAGTGGGAAAGCTTGCCATCTGGATTCTAAGAAATTGTGCAATATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp AGGTTATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGATCTTTGGTGGGACTaGTACGATCAAGTAAACTTG +
Preference number: 5 (lower is better)
Translates to: RLWKYKHQRQDLIFFPTDDLWWD*YDQVNL
Trigger: CAAGTTTACTTGATCGTACAAGTCCCACCAAAGATC...ATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATAACCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp ATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACATTTGCTTAGTAGATATATTTGGTTGGCGACATTaGAACAGCATAGCTACATGC +
Preference number: 5 (lower is better)
Translates to: MSLVWCSLYTAYICLVDIFGWRH*NSIATC
Trigger: GCATGTAGCTATGCTGTTCAAATGTCGCCAACCAAA...TATATCTACTAAGCAAATGTATGCTGTGTAAAGACTACACCACACTAAGGACAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp GTGACTGCCTCTTCAATTTTTGGGGAATGCTTATTATTAAAGATGATACCCTTTTTTGGTTGGCGACATTaGAACAGCATAGCTACATGC +
Preference number: 5 (lower is better)
Translates to: VTASSIFGECLLLKMIPFFGWRH*NSIATC
Trigger: GCATGTAGCTATGCTGTTCAAATGTCGCCAACCAAA...AAAGGGTATCATCTTTAATAATAAGCATTCCCCAAAAATTGAAGAGGCAGTCAC
39% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp CAAACAAGACTTTTTATCCAGCAAGGCAAAACCTTTGCTCAACAATTGCACAGATTGCAGAAAGTTCACTaGTTTCCTGAAATCATCTCC +
Preference number: 5 (lower is better)
Translates to: QTRLFIQQGKTFAQQLHRLQKVH*FPEIIS
Trigger: GGAGATGATTTCAGGAAACAAGTGAACTTTCTGCAA...TCTGTGCAATTGTTGAGCAAAGGTTTTGCCTTGCTGGATAAAAAGTCTTGTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TATATTGCACAATTTCTTAGAATCCAGATGGCAAGCTTTCCCACTGCTTTTGTTTATTTGTGGCTGAACTaGGGGTTAGAACCCAATTCT +
Preference number: 5 (lower is better)
Translates to: YIAQFLRIQMASFPTAFVYLWLN*GLEPNS
Trigger: AGAATTGGGTTCTAACCCCAAGTTCAGCCACAAATA...AACAAAAGCAGTGGGAAAGCTTGCCATCTGGATTCTAAGAAATTGTGCAATATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp AGGTTATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATTATTTGTGGCTGAACTaGGGGTTAGAACCCAATTCT +
Preference number: 5 (lower is better)
Translates to: RLWKYKHQRQDLIFFPTDYLWLN*GLEPNS
Trigger: AGAATTGGGTTCTAACCCCAAGTTCAGCCACAAATA...ATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATAACCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp CAAACAAGACTTTTTATCCAGCAAGGCAAAACCTTTGCTCAACAATTGCACAGAGGAAAGTTAAATGACTaGCCAATGTCTCACAGCTTT +
Preference number: 5 (lower is better)
Translates to: QTRLFIQQGKTFAQQLHRGKLND*PMSHSF
Trigger: AAAGCTGTGAGACATTGGCAAGTCATTTAACTTTCC...TCTGTGCAATTGTTGAGCAAAGGTTTTGCCTTGCTGGATAAAAAGTCTTGTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAAACTGTAATGAGGTACTaGGCCCAGGATGACAGAAAA +
Preference number: 5 (lower is better)
Translates to: YGNINTKGKTLFSSPQMKTVMRY*AQDDRK
Trigger: TTTTCTGTCATCCTGGGCCAAGTACCTCATTACAGT...TTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS GCA 90 bp TCTATGTATATGAAACAACTGAAATATTACCATTTCAAGGATCCCTaGCTTTCTTTTTCTTCTAAGAGAACCGCCACCTGCACAGTTTCT +
Preference number: 5 (lower is better)
Translates to: SMYMKQLKYYHFKDP*LSFSSKRTATCTVS
Trigger: AGAAACTGTGCAGGTGGCGGTTCTCTTAGAAGAAAAAGAAAGGCAGGGATCCTTGAAATGGTAATATTTCAGTTGTTTCATATACATAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000474851.1
CDS-3UTR CAA 90 bp TGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAAAAAGATATTGGAGATCTTaGGTGGGACTTGTACGATCA +
Preference number: 5 (lower is better)
Translates to: WKYKHQRQDLIFFPTDEKRYWRS*VGLVRS
Trigger: TGATCGTACAAGTCCCACCAAAGATCTCCAATATCT...TTTTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCA
38% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TGCGGGGTTTCAAACTTTGATTACCAAGGGACAAGATTCTTGAAGGAATTTATTAATTCCTTATGCTGTTaGCTTACCCCATCGATAGTA +
Preference number: 5 (lower is better)
Translates to: CGVSNFDYQGTRFLKEFINSLCC*LTPSIV
Trigger: TACTATCGATGGGGTAAGCAAACAGCATAAGGAATT...AATAAATTCCTTCAAGAATCTTGTCCCTTGGTAATCAAAGTTTGAAACCCCGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TATTTTTACAGCATCCAGATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACTTCTTGGATGAGAATTaGTTTTCTCTCCTATGTCAG +
Preference number: 5 (lower is better)
Translates to: YFYSIQMSLVWCSLYTAYFLDEN*FSLLCQ
Trigger: CTGACATAGGAGAGAAAACAAATTCTCATCCAAGAA...GTATGCTGTGTAAAGACTACACCACACTAAGGACATCTGGATGCTGTAAAAATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TGCGGGGTTTCAAACTTTGATTACCAAGGGACAAGATTCTTGAAGGAATTTATTGAAACAGATTTTTGTTaGGTCCTCCAAGAACGTGAA +
Preference number: 5 (lower is better)
Translates to: CGVSNFDYQGTRFLKEFIETDFC*VLQERE
Trigger: TTCACGTTCTTGGAGGACCAAACAAAAATCTGTTTC...AATAAATTCCTTCAAGAATCTTGTCCCTTGGTAATCAAAGTTTGAAACCCCGCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TATTTTTACAGCATCCAGATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACCTTATCTCACCATTTTaGTGGTGTGTTTCACATTTG +
Preference number: 5 (lower is better)
Translates to: YFYSIQMSLVWCSLYTAYLISPF*WCVSHL
Trigger: CAAATGTGAAACACACCACAAAAATGGTGAGATAAG...GTATGCTGTGTAAAGACTACACCACACTAAGGACATCTGGATGCTGTAAAAATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp GTGACTGCCTCTTCAATTTTTGGGGAATGCTTATTATTAAAGATGATACCCTTTCCTATAATTCAAGCTTaGGGAAACTTATCCCATGAG +
Preference number: 5 (lower is better)
Translates to: VTASSIFGECLLLKMIPFPIIQA*GNLSHE
Trigger: CTCATGGGATAAGTTTCCCAAAGCTTGAATTATAGG...AAAGGGTATCATCTTTAATAATAAGCATTCCCCAAAAATTGAAGAGGCAGTCAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp ATGTCCTTAGTGTGGTGTAGTCTTTACACAGCATACATTTGCTTAGTAGATATATTGACTTTTTCTGCCTaGCTCACTTTCACTGTATTT +
Preference number: 5 (lower is better)
Translates to: MSLVWCSLYTAYICLVDILTFSA*LTFTVF
Trigger: AAATACAGTGAAAGTGAGCAAGGCAGAAAAAGTCAA...TATATCTACTAAGCAAATGTATGCTGTGTAAAGACTACACCACACTAAGGACAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TATGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAACTTATCTCACCATTTTaGTGGTGTGTTTCACATTTG +
Preference number: 5 (lower is better)
Translates to: YGNINTKGKTLFSSPQMKLISPF*WCVSHL
Trigger: CAAATGTGAAACACACCACAAAAATGGTGAGATAAG...TTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCATA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS-3UTR CAA 90 bp TGGAAATATAAACACCAAAGGCAAGACCTTATTTTCTTCCCCACAGATGAAAAATTTCCTAAATTTTGGTaGGCGACATTTGAACAGCAT +
Preference number: 5 (lower is better)
Translates to: WKYKHQRQDLIFFPTDEKFPKFW*ATFEQH
Trigger: ATGCTGTTCAAATGTCGCCAACCAAAATTTAGGAAA...TTTTTCATCTGTGGGGAAGAAAATAAGGTCTTGCCTTTGGTGTTTATATTTCCA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000490035.7
ENST00000539563.5
CDS GCA 72 bp ACCATGGTGGCCACGCCGAGGTGCGGGTCCGCGGGGTaGTCTGGAGGGGTGCGCGCTGCTCGCGAGGAGAGG +
Preference number: 6 (lower is better)
Translates to: TMVATPRCGSAG*SGGVRAAREER
Trigger: CCTCTCCTCGCGAGCAGCGCGCACCCCTCCAGAGCACCCCGCGGACCCGCACCTCGGCGTGGCCACCATGGT
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000490035.7
CDS CCA 72 bp GGTGGCCACGCCGAGGTGCGGGTCCGCGGGGTGCTCTaGAGGGGTGCGCGCTGCTCGCGAGGAGAGGCTTCA +
Preference number: 6 (lower is better)
Translates to: GGHAEVRVRGVL*RGARCSRGEAS
Trigger: TGAAGCCTCTCCTCGCGAGCAGCGCGCACCCCTCCAGAGCACCCCGCGGACCCGCACCTCGGCGTGGCCACC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000490035.7
CDS TCA 72 bp CCAGTGGCAACTGTTTCCGATCCGGCTGAACTCTCCTaGCCATGGTGGCCACGCCGAGGTGCGGGTCCGCGG +
Preference number: 6 (lower is better)
Translates to: PVATVSDPAELS*PWWPRRGAGPR
Trigger: CCGCGGACCCGCACCTCGGCGTGGCCACCATGGTCAGGAGAGTTCAGCCGGATCGGAAACAGTTGCCACTGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000490035.7
CDS TCA 72 bp CTCAGTAGGACCAGTGGCAACTGTTTCCGATCCGGCTaGACTCTCCTGACCATGGTGGCCACGCCGAGGTGC +
Preference number: 6 (lower is better)
Translates to: LSRTSGNCFRSG*TLLTMVATPRC
Trigger: GCACCTCGGCGTGGCCACCATGGTCAGGAGAGTTCAGCCGGATCGGAAACAGTTGCCACTGGTCCTACTGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000490035.7
CDS TCA 72 bp GAGATGCTGCCAGCAGCCACAGTGGTACGGCCAGACTaGTGGATCCATTTATTCCTCTCACCGACCCAGGTC +
Preference number: 6 (lower is better)
Translates to: EMLPAATVVRPD*WIHLFLSPTQV
Trigger: GACCTGGGTCGGTGAGAGGAATAAATGGATCCATCAGTCTGGCCGTACCACTGTGGCTGCTGGCAGCATCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000333617.8
ENST00000475403.2
ENST00000490035.7
ENST00000539563.5
CDS CCA 72 bp TGCTCCTCAGTGACGTTGGTCACCGTCAGGGAAGACTaGCCCTCCGTGCTCTTAATCTCAAGGCCATTGGCA +
Preference number: 6 (lower is better)
Translates to: CSSVTLVTVRED*PSVLLISRPLA
Trigger: TGCCAATGGCCTTGAGATTAAGAGCACGGAGGGCCAGTCTTCCCTGACGGTGACCAACGTCACTGAGGAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000333617.8
ENST00000473171.5
ENST00000475403.2
ENST00000490035.7
ENST00000498645.1
ENST00000539563.5
CDS CAA 72 bp ACGGGGCTTTCATCCACAGCGAGCGCAGAGCGGGCTTaGCCAGTTTATGGTCCTTTCCACTTTGCCTCTCTC +
Preference number: 6 (lower is better)
Translates to: TGLSSTASAERA*PVYGPFHFASL
Trigger: GAGAGAGGCAAAGTGGAAAGGACCATAAACTGGCAAAGCCCGCTCTGCGCTCGCTGTGGATGAAAGCCCCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490035.7
CDS TCA 72 bp GTCAGGTGCAGGCACTGCCGAGGCCTCACATTTGAGTaGAGCTTGTCGTCCTGTGGTGGCTTCATTGCTCTT +
Preference number: 6 (lower is better)
Translates to: VRCRHCRGLTFE*SLSSCGGFIAL
Trigger: AAGAGCAATGAAGCCACCACAGGACGACAAGCTTCACTCAAATGTGAGGCCTCGGCAGTGCCTGCACCTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000333617.8
ENST00000473171.5
ENST00000490035.7
ENST00000498645.1
ENST00000539563.5
CDS CCA 72 bp TCCACCTTCTGGATTCGGAGGCTGTATTCCAGAGAATaGCGTTTCTCCAGCTCAACCCGTGGGTCCAGAGAC +
Preference number: 6 (lower is better)
Translates to: STFWIRRLYSRE*RFSSSTRGSRD
Trigger: GTCTCTGGACCCACGGGTTGAGCTGGAGAAACGCCATTCTCTGGAATACAGCCTCCGAATCCAGAAGGTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000333617.8
ENST00000474851.1
ENST00000490035.7
ENST00000539563.5
CDS CAA 90 bp CGGTACCACTCAAAGTCAGGTGCAGGCACTGCCGAGGCCTCACATTaGAGTGAAGCTTGTCGTCCTGTGGTGGCTTCATTGCTCTTGGAT +
Preference number: 6 (lower is better)
Translates to: RYHSKSGAGTAEASH*SEACRPVVASLLLD
Trigger: ATCCAAGAGCAATGAAGCCACCACAGGACGACAAGCTTCACTCAAATGTGAGGCCTCGGCAGTGCCTGCACCTGACTTTGAGTGGTACCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000333617.8
ENST00000473171.5
ENST00000490035.7
ENST00000498645.1
ENST00000539563.5
CDS CAA 72 bp TCAAAGTCAGGTGCAGGCACTGCCGAGGCCTCACATTaGAGTGAAGCTTGTCGTCCTGTGGTGGCTTCATTG +
Preference number: 6 (lower is better)
Translates to: SKSGAGTAEASH*SEACRPVVASL
Trigger: CAATGAAGCCACCACAGGACGACAAGCTTCACTCAAATGTGAGGCCTCGGCAGTGCCTGCACCTGACTTTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000333617.8
ENST00000473171.5
ENST00000490035.7
ENST00000498645.1
ENST00000539563.5
CDS CAA 90 bp AGAGAATGGCGTTTCTCCAGCTCAACCCGTGGGTCCAGAGACCACTaGTCATGTCCAGCAAAAATGATGCCAGAACGGTTCAACCAGGCC +
Preference number: 6 (lower is better)
Translates to: REWRFSSSTRGSRDH*SCPAKMMPERFNQA
Trigger: GGCCTGGTTGAACCGTTCTGGCATCATTTTTGCTGGACATGACAAGTGGTCTCTGGACCCACGGGTTGAGCTGGAGAAACGCCATTCTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000333617.8
ENST00000474851.1
ENST00000490035.7
ENST00000539563.5
CDS GCA 72 bp CTATTAACATTTGCTGAGAAGGCAGAGCAGAGATGCTaGCAGCAGCCACAGTGGTACGGCCAGACTGATGGA +
Preference number: 6 (lower is better)
Translates to: LLTFAEKAEQRC*QQPQWYGQTDG
Trigger: TCCATCAGTCTGGCCGTACCACTGTGGCTGCTGGCAGCATCTCTGCTCTGCCTTCTCAGCAAATGTTAATAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000333617.8
ENST00000475403.2
ENST00000490035.7
ENST00000539563.5
CDS CAA 72 bp ATGCCAGAACGGTTCAACCAGGCCACCTTTGAGTTCTaGTCTTCTACAACGCACCTGAGGATGGCTGTGTCC +
Preference number: 6 (lower is better)
Translates to: MPERFNQATFEF*SSTTHLRMAVS
Trigger: GGACACAGCCATCCTCAGGTGCGTTGTAGAAGACAAGAACTCAAAGGTGGCCTGGTTGAACCGTTCTGGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000474851.1
ENST00000490035.7
CDS CAA 72 bp CGTTTCTCCAGCTCAACCCGTGGGTCCAGAGACCACTaGTCATGTCCAGCAAAAATGATGCCAGAACGGTTC +
Preference number: 6 (lower is better)
Translates to: RFSSSTRGSRDH*SCPAKMMPERF
Trigger: GAACCGTTCTGGCATCATTTTTGCTGGACATGACAAGTGGTCTCTGGACCCACGGGTTGAGCTGGAGAAACG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000333617.8
ENST00000474851.1
ENST00000490035.7
ENST00000539563.5
CDS CAA 72 bp ACCTTGACTTGTTTGACATCCGCCGAGGAGACCTCGTaGGCAGCTTTGCACTCATATTTGCCTGACTGCTCC +
Preference number: 6 (lower is better)
Translates to: TLTCLTSAEETS*AALHSYLPDCS
Trigger: GGAGCAGTCAGGCAAATATGAGTGCAAAGCTGCCAACGAGGTCTCCTCGGCGGATGTCAAACAAGTCAAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000333617.8
ENST00000473171.5
ENST00000490035.7
ENST00000498645.1
ENST00000539563.5
CDS TCA 72 bp GTGGGTCCAGAGACCACTTGTCATGTCCAGCAAAAATaGTGCCAGAACGGTTCAACCAGGCCACCTTTGAGT +
Preference number: 6 (lower is better)
Translates to: VGPETTCHVQQK*CQNGSTRPPLS
Trigger: ACTCAAAGGTGGCCTGGTTGAACCGTTCTGGCATCATTTTTGCTGGACATGACAAGTGGTCTCTGGACCCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000333617.8
ENST00000474851.1
ENST00000490035.7
ENST00000539563.5
CDS TCA 72 bp AACTTGGGAGGTCTTGGGCTCATGCTGTGTCTGAACTaGGCAAGTGTAGGAACCCTCATCATAGACATCCAC +
Preference number: 6 (lower is better)
Translates to: NLGGLGLMLCLN*ASVGTLIIDIH
Trigger: GTGGATGTCTATGATGAGGGTTCCTACACTTGCTCAGTTCAGACACAGCATGAGCCCAAGACCTCCCAAGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000333617.8
ENST00000474851.1
ENST00000490035.7
ENST00000539563.5
CDS GCA 72 bp ATTCTATTAACATTTGCTGAGAAGGCAGAGCAGAGATaGTGCCAGCAGCCACAGTGGTACGGCCAGACTGAT +
Preference number: 6 (lower is better)
Translates to: ILLTFAEKAEQR*CQQPQWYGQTD
Trigger: ATCAGTCTGGCCGTACCACTGTGGCTGCTGGCAGCATCTCTGCTCTGCCTTCTCAGCAAATGTTAATAGAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000333617.8
ENST00000475403.2
ENST00000490035.7
ENST00000539563.5
CDS CCA 72 bp GTATTCCAGAGAATGGCGTTTCTCCAGCTCAACCCGTaGGTCCAGAGACCACTTGTCATGTCCAGCAAAAAT +
Preference number: 6 (lower is better)
Translates to: VFQRMAFLQLNP*VQRPLVMSSKN
Trigger: ATTTTTGCTGGACATGACAAGTGGTCTCTGGACCCACGGGTTGAGCTGGAGAAACGCCATTCTCTGGAATAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000333617.8
ENST00000474851.1
ENST00000490035.7
ENST00000539563.5
CDS CCA 72 bp GTGGGACTTGTACGATCAAGTAAACTTGGGAGGTCTTaGGCTCATGCTGTGTCTGAACTGAGCAAGTGTAGG +
Preference number: 6 (lower is better)
Translates to: VGLVRSSKLGRS*AHAVSELSKCR
Trigger: CCTACACTTGCTCAGTTCAGACACAGCATGAGCCCAAGACCTCCCAAGTTTACTTGATCGTACAAGTCCCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000333617.8
ENST00000474851.1
ENST00000490035.7
ENST00000539563.5
CDS TCA 72 bp AAAAATGATGCCAGAACGGTTCAACCAGGCCACCTTTaGGTTCTTGTCTTCTACAACGCACCTGAGGATGGC +
Preference number: 6 (lower is better)
Translates to: KNDARTVQPGHL*VLVFYNAPEDG
Trigger: GCCATCCTCAGGTGCGTTGTAGAAGACAAGAACTCAAAGGTGGCCTGGTTGAACCGTTCTGGCATCATTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333617.8
ENST00000474851.1
ENST00000490035.7
CDS GCA 72 bp TCTTACGTGGATGGCAGCAGGCAAAGGGAGAGCTCATaGAGGGAAACTCCCCTTTATAGAACTATCAGATCT +
Preference number: 6 (lower is better)
Translates to: SYVDGSRQRESS*RETPLYRTIRS
Trigger: AGATCTGATAGTTCTATAAAGGGGAGTTTCCCTGCATGAGCTCTCCCTTTGCCTGCTGCCATCCACGTAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000474851.1
CDS CCA 72 bp TCAGAAGATATCTTTTCACTTACAGTTCCACATGGCTaGGGGAGCCTCACAATCATGGCAGAAGGCAAGGAG +
Preference number: 6 (lower is better)
Translates to: SEDIFSLTVPHG*GSLTIMAEGKE
Trigger: CTCCTTGCCTTCTGCCATGATTGTGAGGCTCCCCCAGCCATGTGGAACTGTAAGTGAAAAGATATCTTCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000474851.1
CDS CCA 72 bp CACTTCAGAAGATATCTTTTCACTTACAGTTCCACATaGCTGGGGGAGCCTCACAATCATGGCAGAAGGCAA +
Preference number: 6 (lower is better)
Translates to: HFRRYLFTYSST*LGEPHNHGRRQ
Trigger: TTGCCTTCTGCCATGATTGTGAGGCTCCCCCAGCCATGTGGAACTGTAAGTGAAAAGATATCTTCTGAAGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000474851.1
CDS CAA 90 bp TTTCATGTGAAAAGTCAATTTAATTCCATCAAGTTGGGCCCTGCTTaGGCATACTTACTGAAAAGGACTAGGCTGGCATTGGTGACCCCC +
Preference number: 6 (lower is better)
Translates to: FHVKSQFNSIKLGPA*AYLLKRTRLALVTP
Trigger: GGGGGTCACCAATGCCAGCCTAGTCCTTTTCAGTAAGTATGCCAAAGCAGGGCCCAACTTGATGGAATTAAATTGACTTTTCACATGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000473171.5
CDS TCA 72 bp TTCCTCTCACCGACCCAGGTCCTGAATCAAAGGCATTaGTTTGTGAAATGGGTCAAGGCTTTTAATGTTGAC +
Preference number: 6 (lower is better)
Translates to: FLSPTQVLNQRH*FVKWVKAFNVD
Trigger: GTCAACATTAAAAGCCTTGACCCATTTCACAAATCAATGCCTTTGATTCAGGACCTGGGTCGGTGAGAGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000475403.2
CDS CAA 72 bp AAAAGTCAATTTAATTCCATCAAGTTGGGCCCTGCTTaGGCATACTTACTGAAAAGGACTAGGCTGGCATTG +
Preference number: 6 (lower is better)
Translates to: KSQFNSIKLGPA*AYLLKRTRLAL
Trigger: CAATGCCAGCCTAGTCCTTTTCAGTAAGTATGCCAAAGCAGGGCCCAACTTGATGGAATTAAATTGACTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000473171.5