Pregenerated sensors for LRRK2-DT (Homo sapiens)
Ensembl gene IDs: ENSG00000225342Ensembl transcript IDs: ENST00000412812.1, ENST00000618127.1
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TGCTCCCAGTTCCCAGACCTTCCGTGGGGCCGCAGGATCCCCGGCTaGCGGGTCGCGGAGGGTGGCCGGCCGGGCTGCGCACTGCGCGCC | + |
|
Preference number: 5 (lower is better) Translates to: CSQFPDLPWGRRIPG*RVAEGGRPGCALRA Trigger: GGCGCGCAGTGCGCAGCCCGGCCGGCCACCCTCCGCGACCCGCCAGCCGGGGATCCTGCGGCCCCACGGAAGGTCTGGGAACTGGGAGCA 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000618127.1 |
||
| CDS CCA 90 bp | GGTCCCAGGAGGCGGCGTCCGCCCGGGGTCCGGTCTAGGCGTGCGTaGGGGCCACGGTCACGGTCATCCCAGCCAGGCCCGGCTCCAGCA | + |
|
Preference number: 5 (lower is better) Translates to: GPRRRRPPGVRSRRA*GPRSRSSQPGPAPA Trigger: TGCTGGAGCCGGGCCTGGCTGGGATGACCGTGACCGTGGCCCCCACGCACGCCTAGACCGGACCCCGGGCGGACGCCGCCTCCTGGGACC 77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000618127.1 |
||
| CDS TCA 90 bp | GCCTCCGCTGCGGGGCTCCGGGCCTGTGGACTCAGCGGAGTCCGCTaGGTCAGTTTCTTCCCGCGCGACTCCCGGCCGCGCCGCCGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: ASAAGLRACGLSGVR*VSFFPRDSRPRRRC Trigger: GCAGCGGCGGCGCGGCCGGGAGTCGCGCGGGAAGAAACTGACTCAGCGGACTCCGCTGAGTCCACAGGCCCGGAGCCCCGCAGCGGAGGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000618127.1 |
||
| CDS CCA 90 bp | AGTCAGTTTCTTCCCGCGCGACTCCCGGCCGCGCCGCCGCTGCGGTaGAATCTGGTCCCAGGAGGCGGCGTCCGCCCGGGGTCCGGTCTA | + |
|
Preference number: 5 (lower is better) Translates to: SQFLPARLPAAPPLR*NLVPGGGVRPGSGL Trigger: TAGACCGGACCCCGGGCGGACGCCGCCTCCTGGGACCAGATTCCACCGCAGCGGCGGCGCGGCCGGGAGTCGCGCGGGAAGAAACTGACT 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000618127.1 |
||
| CDS CCA 90 bp | GCCGGGCTGCGCACTGCGCGCCTCCGCTGCGGGGCTCCGGGCCTGTaGACTCAGCGGAGTCCGCTGAGTCAGTTTCTTCCCGCGCGACTC | + |
|
Preference number: 5 (lower is better) Translates to: AGLRTARLRCGAPGL*TQRSPLSQFLPARL Trigger: GAGTCGCGCGGGAAGAAACTGACTCAGCGGACTCCGCTGAGTCCACAGGCCCGGAGCCCCGCAGCGGAGGCGCGCAGTGCGCAGCCCGGC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000618127.1 |
||
| CDS TCA 90 bp | GAGATTTGCTGGGTTGAAGTCCTGGCTCTCAACTTCCCACCTGTGTaGCTCCAGCAAAGCTCTTCACTTCTCAATTCCAAATCTCAATTT | + |
|
Preference number: 5 (lower is better) Translates to: EICWVEVLALNFPPV*LQQSSSLLNSKSQF Trigger: AAATTGAGATTTGGAATTGAGAAGTGAAGAGCTTTGCTGGAGTCACACAGGTGGGAAGTTGAGAGCCAGGACTTCAACCCAGCAAATCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000412812.1 ENST00000618127.1 |
||
| CDS TCA 90 bp | CCAATCCTCTTCTTTGTAAGTGATCTTGAGGACAGACACATCACCTaGAGGATAGATCATCTTTGCCTAGCCTTGTCTACAATGTTCTTG | + |
|
Preference number: 5 (lower is better) Translates to: PILFFVSDLEDRHIT*RIDHLCLALSTMFL Trigger: CAAGAACATTGTAGACAAGGCTAGGCAAAGATGATCTATCCTTCAGGTGATGTGTCTGTCCTCAAGATCACTTACAAAGAAGAGGATTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000618127.1 |
||
| CDS TCA 90 bp | AGAACAGGAAGGGAGAAACTAATGCAGAGGAACAGAAGGAATGCATaGGATGGAGAATGCCTAGAAATGTTTGAGACATTGATTAAGTCA | + |
|
Preference number: 5 (lower is better) Translates to: RTGREKLMQRNRRNA*DGECLEMFETLIKS Trigger: TGACTTAATCAATGTCTCAAACATTTCTAGGCATTCTCCATCTCATGCATTCCTTCTGTTCCTCTGCATTAGTTTCTCCCTTCCTGTTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000618127.1 |
||
| CDS CCA 72 bp | AGGCGGCGTCCGCCCGGGGTCCGGTCTAGGCGTGCGTaGGGGCCACGGTCACGGTCATCCCAGCCAGGCCCG | + |
|
Preference number: 6 (lower is better) Translates to: RRRPPGVRSRRA*GPRSRSSQPGP Trigger: CGGGCCTGGCTGGGATGACCGTGACCGTGGCCCCCACGCACGCCTAGACCGGACCCCGGGCGGACGCCGCCT 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000618127.1 |
||
| CDS GCA 72 bp | AGTTTCTTCCCGCGCGACTCCCGGCCGCGCCGCCGCTaGGGTGGAATCTGGTCCCAGGAGGCGGCGTCCGCC | + |
|
Preference number: 6 (lower is better) Translates to: SFFPRDSRPRRR*GGIWSQEAASA Trigger: GGCGGACGCCGCCTCCTGGGACCAGATTCCACCGCAGCGGCGGCGCGGCCGGGAGTCGCGCGGGAAGAAACT 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000618127.1 |
||
| CDS TCA 72 bp | GCGGGGCTCCGGGCCTGTGGACTCAGCGGAGTCCGCTaGGTCAGTTTCTTCCCGCGCGACTCCCGGCCGCGC | + |
|
Preference number: 6 (lower is better) Translates to: AGLRACGLSGVR*VSFFPRDSRPR Trigger: GCGCGGCCGGGAGTCGCGCGGGAAGAAACTGACTCAGCGGACTCCGCTGAGTCCACAGGCCCGGAGCCCCGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000618127.1 |
||
| CDS CCA 72 bp | CGCACTGCGCGCCTCCGCTGCGGGGCTCCGGGCCTGTaGACTCAGCGGAGTCCGCTGAGTCAGTTTCTTCCC | + |
|
Preference number: 6 (lower is better) Translates to: RTARLRCGAPGL*TQRSPLSQFLP Trigger: GGGAAGAAACTGACTCAGCGGACTCCGCTGAGTCCACAGGCCCGGAGCCCCGCAGCGGAGGCGCGCAGTGCG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000618127.1 |
||
| CDS TCA 72 bp | GGGCCATCTGGGCGGTGTCCTCTTTTCCCAGCGCCCTaGTTTCTATTCTTAGATCTGGAGATAGGCGGCTTT | + |
|
Preference number: 6 (lower is better) Translates to: GPSGRCPLFPAP*FLFLDLEIGGF Trigger: AAAGCCGCCTATCTCCAGATCTAAGAATAGAAATCAGGGCGCTGGGAAAAGAGGACACCGCCCAGATGGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000618127.1 |
||
| CDS TCA 72 bp | CTTCTACCAGACCTGGAGTTAGGAGATTTGCTGGGTTaGAGTCCTGGCTCTCAACTTCCCACCTGTGTGACT | + |
|
Preference number: 6 (lower is better) Translates to: LLPDLELGDLLG*SPGSQLPTCVT Trigger: AGTCACACAGGTGGGAAGTTGAGAGCCAGGACTTCAACCCAGCAAATCTCCTAACTCCAGGTCTGGTAGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412812.1 |
||
| CDS CCA 72 bp | AGACCTGGAGTTAGGAGATTTGCTGGGTTGAAGTCCTaGCTCTCAACTTCCCACCTGTGTGACTCCAGCAAA | + |
|
Preference number: 6 (lower is better) Translates to: RPGVRRFAGLKS*LSTSHLCDSSK Trigger: TTTGCTGGAGTCACACAGGTGGGAAGTTGAGAGCCAGGACTTCAACCCAGCAAATCTCCTAACTCCAGGTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412812.1 |
||
| CDS CCA 72 bp | CTACCTGGAGTTAGGAGATTTGCTGGGTTGAAGTCCTaGCTCTCAACTTCCCACCTGTGTGACTCCAGCAAA | + |
|
Preference number: 6 (lower is better) Translates to: LPGVRRFAGLKS*LSTSHLCDSSK Trigger: TTTGCTGGAGTCACACAGGTGGGAAGTTGAGAGCCAGGACTTCAACCCAGCAAATCTCCTAACTCCAGGTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000618127.1 |
||
| CDS TCA 72 bp | AGAACCTTCTACCTGGAGTTAGGAGATTTGCTGGGTTaGAGTCCTGGCTCTCAACTTCCCACCTGTGTGACT | + |
|
Preference number: 6 (lower is better) Translates to: RTFYLELGDLLG*SPGSQLPTCVT Trigger: AGTCACACAGGTGGGAAGTTGAGAGCCAGGACTTCAACCCAGCAAATCTCCTAACTCCAGGTAGAAGGTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000618127.1 |
||
| CDS TCA 72 bp | TGGGTTGAAGTCCTGGCTCTCAACTTCCCACCTGTGTaGCTCCAGCAAAGCTCTTCACTTCTCAATTCCAAA | + |
|
Preference number: 6 (lower is better) Translates to: WVEVLALNFPPV*LQQSSSLLNSK Trigger: TTTGGAATTGAGAAGTGAAGAGCTTTGCTGGAGTCACACAGGTGGGAAGTTGAGAGCCAGGACTTCAACCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000412812.1 ENST00000618127.1 |
||
| CDS TCA 72 bp | CCTGTCCTTTGTCTCAGCTCTAATAGCTCTGAGAGCTaGTTACTTTTCGGGTGTCCCAAGTATCAGGATCCT | + |
|
Preference number: 6 (lower is better) Translates to: PVLCLSSNSSES*LLFGCPKYQDP Trigger: AGGATCCTGATACTTGGGACACCCGAAAAGTAATCAGCTCTCAGAGCTATTAGAGCTGAGACAAAGGACAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000618127.1 |
||
| CDS CCA 72 bp | GTCTGTCTGTGTTTCAGGAATGCAGTTTATTTTGATTaGTGTCTTCTACCAGACCTGGAGTTAGGAGATTTG | + |
|
Preference number: 6 (lower is better) Translates to: VCLCFRNAVYFD*CLLPDLELGDL Trigger: CAAATCTCCTAACTCCAGGTCTGGTAGAAGACACCAATCAAAATAAACTGCATTCCTGAAACACAGACAGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000412812.1 |
||
| CDS TCA 72 bp | CTCAAATTTCCAAAAGTTAATTTAGTGGCCTTTTGGTaGCCAGAGCTTCAGATAACTCACAGGGAAACAATG | + |
|
Preference number: 6 (lower is better) Translates to: LKFPKVNLVAFW*PELQITHRETM Trigger: CATTGTTTCCCTGTGAGTTATCTGAAGCTCTGGTCACCAAAAGGCCACTAAATTAACTTTTGGAAATTTGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000618127.1 |
||