Pregenerated sensors for LRRC19 (Homo sapiens)
Ensembl gene IDs: ENSG00000184434Ensembl transcript IDs: ENST00000380055.6
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TTACATAAATCCTATTGTAAAGAATCTTGGCCAGGCACGGTGCTCCATGCCTGTAGGCGGAGGTTGCAGTaGTCTGAGACTGCGCTGCTG | + |
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Preference number: 2 (lower is better) Translates to: LHKSYCKESWPGTVLHACRRRLQ*SETALL Trigger: CAGCAGCGCAGTCTCAGATCACTGCAACCTCCGCCT...ACAGGCATGGAGCACCGTGCCTGGCCAAGATTCTTTACAATAGGATTTATGTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| 3UTR-3UTR GCA 90 bp | TTACATAAATCCTATTGTAAAGAATCTTGGCCAGGCACGGTGCTCCATGCCTGTCCAGGAGGCGGAGGTTaGAGTGATCTGAGACTGCGC | + |
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Preference number: 2 (lower is better) Translates to: LHKSYCKESWPGTVLHACPGGGG*SDLRLR Trigger: GCGCAGTCTCAGATCACTGCAACCTCCGCCTCCTGG...ACAGGCATGGAGCACCGTGCCTGGCCAAGATTCTTTACAATAGGATTTATGTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| 3UTR-3UTR TCA 90 bp | CAGCTCATATTTGACCTTGCTCCATCCATACCTCTAGCCACTGTTCCATTCCACATTAGGGATTATGCCTaGACATTGTGCTTGTGCTTT | + |
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Preference number: 2 (lower is better) Translates to: QLIFDLAPSIPLATVPFHIRDYA*TLCLCF Trigger: AAAGCACAAGCACAATGTTCAGGCATAATCCCTAAT...GTGGAATGGAACAGTGGCTAGAGGTATGGATGGAGCAAGGTCAAATATGAGCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| 3UTR-3UTR TCA 90 bp | CAGCTCATATTTGACCTTGCTCCATCCATACCTCTAGCCACTGTTCCATTCCACGTCAGTTACTGTATTTaGACCTGCTTGCTCAATATA | + |
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Preference number: 2 (lower is better) Translates to: QLIFDLAPSIPLATVPFHVSYCI*TCLLNI Trigger: TATATTGAGCAAGCAGGTTCAAATACAGTAACTGAC...GTGGAATGGAACAGTGGCTAGAGGTATGGATGGAGCAAGGTCAAATATGAGCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| 3UTR-3UTR CCA 90 bp | CAGCTCATATTTGACCTTGCTCCATCCATACCTCTAGCCACTGTTCCATTCCACCCAAACTACGTTCTTTaGAATGTTATTGAACTACGA | + |
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Preference number: 2 (lower is better) Translates to: QLIFDLAPSIPLATVPFHPNYVL*NVIELR Trigger: TCGTAGTTCAATAACATTCCAAAGAACGTAGTTTGG...GTGGAATGGAACAGTGGCTAGAGGTATGGATGGAGCAAGGTCAAATATGAGCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| 3UTR-3UTR TCA 90 bp | TTACATAAATCCTATTGTAAAGAATCTTGGCCAGGCACGGTGCTCCATGCCTGTATGTTGTCATTAATATaGATGCCTGCCAGCTGTATT | + |
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Preference number: 2 (lower is better) Translates to: LHKSYCKESWPGTVLHACMLSLI*MPASCI Trigger: AATACAGCTGGCAGGCATTCATATTAATGACAACAT...ACAGGCATGGAGCACCGTGCCTGGCCAAGATTCTTTACAATAGGATTTATGTAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| 3UTR-3UTR TCA 90 bp | CACAACATACACAGAAGTAGCATATTATACCCTTATTTAGCTCCCAGCTCCATCCAGCACAGACCAATTTaGATAAAAATCTCCCAGAGA | + |
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Preference number: 2 (lower is better) Translates to: HNIHRSSILYPYLAPSSIQHRPI*IKISQR Trigger: TCTCTGGGAGATTTTTATTCAAATTGGTCTGTGCTG...GATGGAGCTGGGAGCTAAATAAGGGTATAATATGCTACTTCTGTGTATGTTGTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| 3UTR-3UTR TCA 90 bp | GGAATGTTATTGAACTACGAGCTCTTAGTAGATGTAACTGAAAGAATGGGTTTTTTTCCTGTAGTAATTTaGCCATGTACCTCCTTCTTC | + |
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Preference number: 2 (lower is better) Translates to: GMLLNYELLVDVTERMGFFPVVI*PCTSFF Trigger: GAAGAAGGAGGTACATGGTCAAATTACTACAGGAAA...AAAACCCATTCTTTCAGTTACATCTACTAAGAGCTCGTAGTTCAATAACATTCC 37% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| 3UTR-3UTR CAA 90 bp | CAGCTCATATTTGACCTTGCTCCATCCATACCTCTAGCCACTGTTCCATTCCACTGTCAGTTACTGTATTaGAACCTGCTTGCTCAATAT | + |
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Preference number: 3 (lower is better) Translates to: QLIFDLAPSIPLATVPFHCQLLY*NLLAQY Trigger: ATATTGAGCAAGCAGGTTCAAATACAGTAACTGACA...GTGGAATGGAACAGTGGCTAGAGGTATGGATGGAGCAAGGTCAAATATGAGCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| 3UTR-3UTR CAA 90 bp | TTACATAAATCCTATTGTAAAGAATCTTGGCCAGGCACGGTGCTCCATGCCTGTATTGTGATGCCCACTTaGGAAGCCAGTATGACATTA | + |
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Preference number: 3 (lower is better) Translates to: LHKSYCKESWPGTVLHACIVMPT*EASMTL Trigger: TAATGTCATACTGGCTTCCAAAGTGGGCATCACAAT...ACAGGCATGGAGCACCGTGCCTGGCCAAGATTCTTTACAATAGGATTTATGTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| 3UTR CCA 72 bp | CAGCCGATAGGCCAGTGTTTTCCAAACTACGTTCTTTaGAATGTTATTGAACTACGAGCTCTTAGTAGATGT | + |
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Preference number: 3 (lower is better) Translates to: QPIGQCFPNYVL*NVIELRALSRC Trigger: ACATCTACTAAGAGCTCGTAGTTCAATAACATTCCAAAGAACGTAGTTTGGAAAACACTGGCCTATCGGCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| 3UTR-3UTR CAA 90 bp | GACTATGTAACTGTCAACTACCGAGGAGTGTCAGTTACTGTATTTGAACCTGCTCCTGCCAGCTGTATTTaGTTATGTCACATAGCAAAA | + |
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Preference number: 3 (lower is better) Translates to: DYVTVNYRGVSVTVFEPAPASCI*LCHIAK Trigger: TTTTGCTATGTGACATAACAAAATACAGCTGGCAGG...AGCAGGTTCAAATACAGTAACTGACACTCCTCGGTAGTTGACAGTTACATAGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| 3UTR-3UTR CAA 90 bp | CACAACATACACAGAAGTAGCATATTATACCCTTATTTAGCTCCCAGCTCCATCTCAGCACAGACCAATTaGAATAAAAATCTCCCAGAG | + |
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Preference number: 3 (lower is better) Translates to: HNIHRSSILYPYLAPSSISAQTN*NKNLPE Trigger: CTCTGGGAGATTTTTATTCAAATTGGTCTGTGCTGA...GATGGAGCTGGGAGCTAAATAAGGGTATAATATGCTACTTCTGTGTATGTTGTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| CDS-3UTR TCA 90 bp | GGTTGCAGTGATCTGAGACTGCGCTGCTGCAGTCCAGCCTGGGAGACAGTGCGATGTTTCTGGTATCTGTaGAAGAGAGCTTGGATTTCC | + |
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Preference number: 4 (lower is better) Translates to: GCSDLRLRCCSPAWETVRCFWYL*KRAWIS Trigger: GGAAATCCAAGCTCTCTTTCACAGATACCAGAAACA...TCGCACTGTCTCCCAGGCTGGACTGCAGCAGCGCAGTCTCAGATCACTGCAACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| CDS-3UTR TCA 90 bp | GGTTGCAGTGATCTGAGACTGCGCTGCTGCAGTCCAGCCTGGGAGACAGTGCGAGGTAGCTACACATGGTaGTGTTCTCATTTTCTAATG | + |
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Preference number: 4 (lower is better) Translates to: GCSDLRLRCCSPAWETVRGSYTW*CSHFLM Trigger: CATTAGAAAATGAGAACATCACCATGTGTAGCTACC...TCGCACTGTCTCCCAGGCTGGACTGCAGCAGCGCAGTCTCAGATCACTGCAACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| CDS-3UTR TCA 90 bp | GGTTGCAGTGATCTGAGACTGCGCTGCTGCAGTCCAGCCTGGGAGACAGTGCGACAGCACAGACCAATTTaGATAAAAATCTCCCAGAGA | + |
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Preference number: 4 (lower is better) Translates to: GCSDLRLRCCSPAWETVRQHRPI*IKISQR Trigger: TCTCTGGGAGATTTTTATTCAAATTGGTCTGTGCTG...TCGCACTGTCTCCCAGGCTGGACTGCAGCAGCGCAGTCTCAGATCACTGCAACC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| CDS-3UTR CCA 90 bp | CAGCTCATATTTGACCTTGCTCCATCCATACCTCTAGCCACTGTTCCATTCCACTATTGTAAAGAATCTTaGCCAGGCACGGTGCTCCAT | + |
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Preference number: 4 (lower is better) Translates to: QLIFDLAPSIPLATVPFHYCKES*PGTVLH Trigger: ATGGAGCACCGTGCCTGGCCAAGATTCTTTACAATA...GTGGAATGGAACAGTGGCTAGAGGTATGGATGGAGCAAGGTCAAATATGAGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| CDS-3UTR TCA 90 bp | GGAATGTTATTGAACTACGAGCTCTTAGTAGATGTAACTGAAAGAATGGGTTTTAGGCGGAGGTTGCAGTaGTCTGAGACTGCGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: GMLLNYELLVDVTERMGFRRRLQ*SETALL Trigger: CAGCAGCGCAGTCTCAGATCACTGCAACCTCCGCCT...AAAACCCATTCTTTCAGTTACATCTACTAAGAGCTCGTAGTTCAATAACATTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| CDS-3UTR TCA 90 bp | CAGCTCATATTTGACCTTGCTCCATCCATACCTCTAGCCACTGTTCCATTCCACGTTATTAATTCCAGATaGAATAGTGGTGGTACATCC | + |
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Preference number: 4 (lower is better) Translates to: QLIFDLAPSIPLATVPFHVINSR*NSGGTS Trigger: GGATGTACCACCACTATTTCATCTGGAATTAATAAC...GTGGAATGGAACAGTGGCTAGAGGTATGGATGGAGCAAGGTCAAATATGAGCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| CDS-3UTR CCA 90 bp | GGAATGTTATTGAACTACGAGCTCTTAGTAGATGTAACTGAAAGAATGGGTTTTTGCTGCAGTCCAGCCTaGGAGACAGTGCGAGACTTT | + |
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Preference number: 4 (lower is better) Translates to: GMLLNYELLVDVTERMGFCCSPA*ETVRDF Trigger: AAAGTCTCGCACTGTCTCCCAGGCTGGACTGCAGCA...AAAACCCATTCTTTCAGTTACATCTACTAAGAGCTCGTAGTTCAATAACATTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| CDS-3UTR GCA 90 bp | CAGCTCATATTTGACCTTGCTCCATCCATACCTCTAGCCACTGTTCCATTCCACGTGTTCAACCAGTTCTaGAAATTAAATAGACTGCAA | + |
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Preference number: 4 (lower is better) Translates to: QLIFDLAPSIPLATVPFHVFNQF*KLNRLQ Trigger: TTGCAGTCTATTTAATTTGCAGAACTGGTTGAACAC...GTGGAATGGAACAGTGGCTAGAGGTATGGATGGAGCAAGGTCAAATATGAGCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| CDS-3UTR TCA 90 bp | TTACATAAATCCTATTGTAAAGAATCTTGGCCAGGCACGGTGCTCCATGCCTGTAATAAAAATGAGAAGTaGAGTCGTCAGTACAGTGAC | + |
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Preference number: 4 (lower is better) Translates to: LHKSYCKESWPGTVLHACNKNEK*SRQYSD Trigger: GTCACTGTACTGACGACTTCACTTCTCATTTTTATT...ACAGGCATGGAGCACCGTGCCTGGCCAAGATTCTTTACAATAGGATTTATGTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| CDS-3UTR TCA 90 bp | CACAACATACACAGAAGTAGCATATTATACCCTTATTTAGCTCCCAGCTCCATCGATCCTGCATTATGGTaGCAGCCTTTCTTTATAACC | + |
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Preference number: 4 (lower is better) Translates to: HNIHRSSILYPYLAPSSIDPALW*QPFFIT Trigger: GGTTATAAAGAAAGGCTGTCACCATAATGCAGGATC...GATGGAGCTGGGAGCTAAATAAGGGTATAATATGCTACTTCTGTGTATGTTGTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| CDS-3UTR TCA 90 bp | CACCCAAGCACTGCTAAGAATAGTAGTGCTAGTATTGTAGACTATGTAACTGTCTGGCATTCAGCCTTATaGGGTACTGTTTTGATATTG | + |
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Preference number: 4 (lower is better) Translates to: HPSTAKNSSASIVDYVTVWHSAL*GTVLIL Trigger: CAATATCAAAACAGTACCTCATAAGGCTGAATGCCA...GACAGTTACATAGTCTACAATACTAGCACTACTATTCTTAGCAGTGCTTGGGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| CDS-3UTR TCA 90 bp | CACCCAAGCACTGCTAAGAATAGTAGTGCTAGTATTGTAGACTATGTAACTGTCTTTCCTGTAGTAATTTaGCCATGTACCTCCTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: HPSTAKNSSASIVDYVTVFPVVI*PCTSFF Trigger: GAAGAAGGAGGTACATGGTCAAATTACTACAGGAAA...GACAGTTACATAGTCTACAATACTAGCACTACTATTCTTAGCAGTGCTTGGGTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| 3UTR CAA 72 bp | CCACATGAAGATTCCTTAGTGTCAGCACAGACCAATTaGAATAAAAATCTCCCAGAGAGAGGTGGAAATATG | + |
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Preference number: 4 (lower is better) Translates to: PHEDSLVSAQTN*NKNLPERGGNM Trigger: CATATTTCCACCTCTCTCTGGGAGATTTTTATTCAAATTGGTCTGTGCTGACACTAAGGAATCTTCATGTGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| CDS-3UTR TCA 90 bp | CACAACATACACAGAAGTAGCATATTATACCCTTATTTAGCTCCCAGCTCCATCATGTTGTCATTAATATaGATGCCTGCCAGCTGTATT | + |
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Preference number: 4 (lower is better) Translates to: HNIHRSSILYPYLAPSSIMLSLI*MPASCI Trigger: AATACAGCTGGCAGGCATTCATATTAATGACAACAT...GATGGAGCTGGGAGCTAAATAAGGGTATAATATGCTACTTCTGTGTATGTTGTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| CDS-3UTR TCA 90 bp | CACCCAAGCACTGCTAAGAATAGTAGTGCTAGTATTGTAGACTATGTAACTGTCGTCAGTTACTGTATTTaGACCTGCTTGCTCAATATA | + |
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Preference number: 4 (lower is better) Translates to: HPSTAKNSSASIVDYVTVVSYCI*TCLLNI Trigger: TATATTGAGCAAGCAGGTTCAAATACAGTAACTGAC...GACAGTTACATAGTCTACAATACTAGCACTACTATTCTTAGCAGTGCTTGGGTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| CDS-3UTR GCA 90 bp | GACTATGTAACTGTCAACTACCGAGGAGTGTCAGTTACTGTATTTGAACCTGCTCTAATCAAATTGCCTTaGAGATTCAGAAGTTTTAGG | + |
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Preference number: 4 (lower is better) Translates to: DYVTVNYRGVSVTVFEPALIKLP*RFRSFR Trigger: CCTAAAACTTCTGAATCTGCAAGGCAATTTGATTAG...AGCAGGTTCAAATACAGTAACTGACACTCCTCGGTAGTTGACAGTTACATAGTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| CDS-3UTR CCA 90 bp | GACTATGTAACTGTCAACTACCGAGGAGTGTCAGTTACTGTATTTGAACCTGCTTTAAAATTTCTAGACTaGAGAGGTTACCAAAACCGT | + |
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Preference number: 4 (lower is better) Translates to: DYVTVNYRGVSVTVFEPALKFLD*RGYQNR Trigger: ACGGTTTTGGTAACCTCTCCAGTCTAGAAATTTTAA...AGCAGGTTCAAATACAGTAACTGACACTCCTCGGTAGTTGACAGTTACATAGTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| CDS-3UTR CCA 90 bp | GACTATGTAACTGTCAACTACCGAGGAGTGTCAGTTACTGTATTTGAACCTGCTCCAAACTACGTTCTTTaGAATGTTATTGAACTACGA | + |
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Preference number: 4 (lower is better) Translates to: DYVTVNYRGVSVTVFEPAPNYVL*NVIELR Trigger: TCGTAGTTCAATAACATTCCAAAGAACGTAGTTTGG...AGCAGGTTCAAATACAGTAACTGACACTCCTCGGTAGTTGACAGTTACATAGTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| 3UTR CAA 72 bp | GCCAGTGTTTTCCAAACTACGTTCTTTGGAATGTTATaGAACTACGAGCTCTTAGTAGATGTAACTGAAAGA | + |
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Preference number: 4 (lower is better) Translates to: ASVFQTTFFGML*NYELLVDVTER Trigger: TCTTTCAGTTACATCTACTAAGAGCTCGTAGTTCAATAACATTCCAAAGAACGTAGTTTGGAAAACACTGGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| CDS-3UTR CAA 90 bp | GGTTGCAGTGATCTGAGACTGCGCTGCTGCAGTCCAGCCTGGGAGACAGTGCGACTGAAAGAATGGGTTTaGTTGTCAAGTAAGTTTGAG | + |
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Preference number: 5 (lower is better) Translates to: GCSDLRLRCCSPAWETVRLKEWV*LSSKFE Trigger: CTCAAACTTACTTGACAACAAAACCCATTCTTTCAG...TCGCACTGTCTCCCAGGCTGGACTGCAGCAGCGCAGTCTCAGATCACTGCAACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| CDS-3UTR CAA 90 bp | CAGCTCATATTTGACCTTGCTCCATCCATACCTCTAGCCACTGTTCCATTCCACTCAGCACAGACCAATTaGAATAAAAATCTCCCAGAG | + |
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Preference number: 5 (lower is better) Translates to: QLIFDLAPSIPLATVPFHSAQTN*NKNLPE Trigger: CTCTGGGAGATTTTTATTCAAATTGGTCTGTGCTGA...GTGGAATGGAACAGTGGCTAGAGGTATGGATGGAGCAAGGTCAAATATGAGCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| CDS-3UTR CAA 90 bp | CACAACATACACAGAAGTAGCATATTATACCCTTATTTAGCTCCCAGCTCCATCCTGATGAAGGAAATTTaGAGTGGCATTCAGCCTTAT | + |
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Preference number: 5 (lower is better) Translates to: HNIHRSSILYPYLAPSSILMKEI*SGIQPY Trigger: ATAAGGCTGAATGCCACTCAAAATTTCCTTCATCAG...GATGGAGCTGGGAGCTAAATAAGGGTATAATATGCTACTTCTGTGTATGTTGTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| CDS-3UTR CAA 90 bp | CACAACATACACAGAAGTAGCATATTATACCCTTATTTAGCTCCCAGCTCCATCCCTGCCAGCTGTATTTaGTTATGTCACATAGCAAAA | + |
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Preference number: 5 (lower is better) Translates to: HNIHRSSILYPYLAPSSIPASCI*LCHIAK Trigger: TTTTGCTATGTGACATAACAAAATACAGCTGGCAGG...GATGGAGCTGGGAGCTAAATAAGGGTATAATATGCTACTTCTGTGTATGTTGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| CDS-3UTR CAA 90 bp | GGAATGTTATTGAACTACGAGCTCTTAGTAGATGTAACTGAAAGAATGGGTTTTATTGTGATGCCCACTTaGGAAGCCAGTATGACATTA | + |
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Preference number: 5 (lower is better) Translates to: GMLLNYELLVDVTERMGFIVMPT*EASMTL Trigger: TAATGTCATACTGGCTTCCAAAGTGGGCATCACAAT...AAAACCCATTCTTTCAGTTACATCTACTAAGAGCTCGTAGTTCAATAACATTCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| CDS-3UTR CAA 90 bp | GGAATGTTATTGAACTACGAGCTCTTAGTAGATGTAACTGAAAGAATGGGTTTTTGTGATTATAGCCAATaGATTATGAGGACTCAGCAA | + |
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Preference number: 5 (lower is better) Translates to: GMLLNYELLVDVTERMGFCDYSQ*IMRTQQ Trigger: TTGCTGAGTCCTCATAATCAATTGGCTATAATCACA...AAAACCCATTCTTTCAGTTACATCTACTAAGAGCTCGTAGTTCAATAACATTCC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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| CDS TCA 72 bp | TGTAGCTCTGCAGGCTGTTGGGGTAGCTACACATGGTaGTGTTCTCATTTTCTAATGTCACATTTGATGTGT | + |
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Preference number: 6 (lower is better) Translates to: CSSAGCWGSYTW*CSHFLMSHLMC Trigger: ACACATCAAATGTGACATTAGAAAATGAGAACATCACCATGTGTAGCTACCCCAACAGCCTGCAGAGCTACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380055.6 |
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