RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LRCOL1 (Homo sapiens)

Ensembl gene IDs: ENSG00000204583

Ensembl transcript IDs: ENST00000376608.9, ENST00000536100.1, ENST00000544018.6, ENST00000545517.2, ENST00000616042.1, ENST00000622710.4

Found 262 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGGAAGCTTCCGCTGGAACCAGCCCCCGCGCAACGCGGTCCTGCGTaGACATCCCAGGGCCCAGGCCGGTCCCTCGCGCCCAGGTTCGAG +
Preference number: 1 (lower is better)
Translates to: GKLPLEPAPAQRGPA*TSQGPGRSLAPRFE
Trigger: CTCGAACCTGGGCGCGAGGGACCGGCCTGGGCCCTGGGATGTTCACGCAGGACCGCGTTGCGCGGGGGCTGGTTCCAGCGGAAGCTTCCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
3UTR GCA 90 bp GTAAGGGAAGCTTCCGCTGGAACCAGCCCCCGCGCAACGCGGTCCTaGGTGAACATCCCAGGGCCCAGGCCGGTCCCTCGCGCCCAGGTT +
Preference number: 1 (lower is better)
Translates to: VREASAGTSPRATRS*VNIPGPRPVPRAQV
Trigger: AACCTGGGCGCGAGGGACCGGCCTGGGCCCTGGGATGTTCACGCAGGACCGCGTTGCGCGGGGGCTGGTTCCAGCGGAAGCTTCCCTTAC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
3UTR GCA 90 bp AGATGGGCGGTGAAGCGCCGGCCTCTCCCAGCAGGGGTGCCTGGGTaGTCAGAGCCCACCTCTCACAGCCGCGGTCCCGGTCCAGTTGCT +
Preference number: 1 (lower is better)
Translates to: RWAVKRRPLPAGVPG*SEPTSHSRGPGPVA
Trigger: AGCAACTGGACCGGGACCGCGGCTGTGAGAGGTGGGCTCTGAGCACCCAGGCACCCCTGCTGGGAGAGGCCGGCGCTTCACCGCCCATCT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000545517.2
3UTR CCA 90 bp TATGAGATGGGCGGTGAAGCGCCGGCCTCTCCCAGCAGGGGTGCCTaGGTGCTCAGAGCCCACCTCTCACAGCCGCGGTCCCGGTCCAGT +
Preference number: 1 (lower is better)
Translates to: YEMGGEAPASPSRGA*VLRAHLSQPRSRSS
Trigger: ACTGGACCGGGACCGCGGCTGTGAGAGGTGGGCTCTGAGCACCCAGGCACCCCTGCTGGGAGAGGCCGGCGCTTCACCGCCCATCTCATA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000545517.2
3UTR GCA 90 bp TGGGTGCTCAGAGCCCACCTCTCACAGCCGCGGTCCCGGTCCAGTTaGTGTGTTTCTGTGCGACTTCCCTGTGGCGGCCAAGGGAGGGCC +
Preference number: 1 (lower is better)
Translates to: WVLRAHLSQPRSRSS*CVSVRLPCGGQGRA
Trigger: GGCCCTCCCTTGGCCGCCACAGGGAAGTCGCACAGAAACACAGCAACTGGACCGGGACCGCGGCTGTGAGAGGTGGGCTCTGAGCACCCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545517.2
3UTR GCA 90 bp TGGGCTTGCGCCAGGGCACACACTGCAGGAAGACGCTTTGGGGCGTaGACAACTCCTGCGGGCTGTTGTTGCGGACGCAGCAGCTGCTCT +
Preference number: 1 (lower is better)
Translates to: WACARAHTAGRRFGA*TTPAGCCCGRSSCS
Trigger: AGAGCAGCTGCTGCGTCCGCAACAACAGCCCGCAGGAGTTGTGCACGCCCCAAAGCGTCTTCCTGCAGTGTGTGCCCTGGCGCAAGCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR TCA 90 bp CTCCTGCGGGCTGTTGTTGCGGACGCAGCAGCTGCTCTGGCACTCTaGGTCGTGCGAGCATCTGTACCCATTGGGCTTCCTCCAGGGCAG +
Preference number: 1 (lower is better)
Translates to: LLRAVVADAAAALAL*VVRASVPIGLPPGQ
Trigger: CTGCCCTGGAGGAAGCCCAATGGGTACAGATGCTCGCACGACTCAGAGTGCCAGAGCAGCTGCTGCGTCCGCAACAACAGCCCGCAGGAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000622710.4
3UTR GCA 90 bp GGGCTGTTGTTGCGGACGCAGCAGCTGCTCTGGCACTCTGAGTCGTaGGAGCATCTGTACCCATTGGGCTCACCTTCCTCCAGGGCAGGC +
Preference number: 1 (lower is better)
Translates to: GLLLRTQQLLWHSES*EHLYPLGSPSSRAG
Trigger: GCCTGCCCTGGAGGAAGGTGAGCCCAATGGGTACAGATGCTCGCACGACTCAGAGTGCCAGAGCAGCTGCTGCGTCCGCAACAACAGCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545517.2
3UTR GCA 90 bp GGGGCGTGCACAACTCCTGCGGGCTGTTGTTGCGGACGCAGCAGCTaGTCTGGCACTCTGAGTCGTGCGAGCATCTGTACCCATTGGGCT +
Preference number: 1 (lower is better)
Translates to: GACTTPAGCCCGRSS*SGTLSRASICTHWA
Trigger: AGCCCAATGGGTACAGATGCTCGCACGACTCAGAGTGCCAGAGCAGCTGCTGCGTCCGCAACAACAGCCCGCAGGAGTTGTGCACGCCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR GCA 90 bp GCAGGAAGACGCTTTGGGGCGTGCACAACTCCTGCGGGCTGTTGTTaGGGACGCAGCAGCTGCTCTGGCACTCTGAGTCGTGCGAGCATC +
Preference number: 1 (lower is better)
Translates to: AGRRFGACTTPAGCC*GRSSCSGTLSRASI
Trigger: GATGCTCGCACGACTCAGAGTGCCAGAGCAGCTGCTGCGTCCGCAACAACAGCCCGCAGGAGTTGTGCACGCCCCAAAGCGTCTTCCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR GCA 90 bp GGGCTGTTGTTGCGGACGCAGCAGCTGCTCTGGCACTCTGAGTCGTaGGAGCATCTGTACCCATTGGGCTTCCTCCAGGGCAGGCACTGC +
Preference number: 1 (lower is better)
Translates to: GLLLRTQQLLWHSES*EHLYPLGFLQGRHC
Trigger: GCAGTGCCTGCCCTGGAGGAAGCCCAATGGGTACAGATGCTCGCACGACTCAGAGTGCCAGAGCAGCTGCTGCGTCCGCAACAACAGCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000622710.4
3UTR CCA 90 bp CAGAGCCCCAGAAACAGCAGCACAAACCGTAAGGGAAGCTTCCGCTaGAACCAGCCCCCGCGCAACGCGGTCCTGCGTGAACATCCCAGG +
Preference number: 1 (lower is better)
Translates to: QSPRNSSTNRKGSFR*NQPPRNAVLREHPR
Trigger: CCTGGGATGTTCACGCAGGACCGCGTTGCGCGGGGGCTGGTTCCAGCGGAAGCTTCCCTTACGGTTTGTGCTGCTGTTTCTGGGGCTCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
3UTR TCA 90 bp CTCCTGCGGGCTGTTGTTGCGGACGCAGCAGCTGCTCTGGCACTCTaGGTCGTGCGAGCATCTGTACCCATTGGGCTCACCTTCCTCCAG +
Preference number: 1 (lower is better)
Translates to: LLRAVVADAAAALAL*VVRASVPIGLTFLQ
Trigger: CTGGAGGAAGGTGAGCCCAATGGGTACAGATGCTCGCACGACTCAGAGTGCCAGAGCAGCTGCTGCGTCCGCAACAACAGCCCGCAGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545517.2
3UTR GCA 90 bp AGCAGTTGCTCTGGCACTCCTCGTGTCTCCTGCATGGCTCCCCGATaGCCTGAAACACCACTCACCAGCTCGCTCACCTGTTCCTGGGCA +
Preference number: 1 (lower is better)
Translates to: SSCSGTPRVSCMAPR*PETPLTSSLTCSWA
Trigger: TGCCCAGGAACAGGTGAGCGAGCTGGTGAGTGGTGTTTCAGGGCATCGGGGAGCCATGCAGGAGACACGAGGAGTGCCAGAGCAACTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR CCA 90 bp GTGCACAACTCCTGCGGGCTGTTGTTGCGGACGCAGCAGCTGCTCTaGCACTCTGAGTCGTGCGAGCATCTGTACCCATTGGGCTCACCT +
Preference number: 1 (lower is better)
Translates to: VHNSCGLLLRTQQLL*HSESCEHLYPLGSP
Trigger: AGGTGAGCCCAATGGGTACAGATGCTCGCACGACTCAGAGTGCCAGAGCAGCTGCTGCGTCCGCAACAACAGCCCGCAGGAGTTGTGCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545517.2
3UTR CCA 90 bp GTGCACAACTCCTGCGGGCTGTTGTTGCGGACGCAGCAGCTGCTCTaGCACTCTGAGTCGTGCGAGCATCTGTACCCATTGGGCTTCCTC +
Preference number: 1 (lower is better)
Translates to: VHNSCGLLLRTQQLL*HSESCEHLYPLGFL
Trigger: GAGGAAGCCCAATGGGTACAGATGCTCGCACGACTCAGAGTGCCAGAGCAGCTGCTGCGTCCGCAACAACAGCCCGCAGGAGTTGTGCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000622710.4
3UTR GCA 90 bp GGCCAGGAGCCTTTATTGATGTTTAACAATCAGGCTACACCCCAGTaGCTGGGATTTGTTCTCACAGACACTTCGCGCCACCAGGCTGGT +
Preference number: 1 (lower is better)
Translates to: GQEPLLMFNNQATPQ*LGFVLTDTSRHQAG
Trigger: ACCAGCCTGGTGGCGCGAAGTGTCTGTGAGAACAAATCCCAGGCACTGGGGTGTAGCCTGATTGTTAAACATCAATAAAGGCTCCTGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000376608.9
ENST00000544018.6
3UTR-3UTR GCA 90 bp TGGGCCAGGATCCCGGTCCGGGGAATGCAGCGGAAGGGGCTGTACTCCCTCAGCCGCGCAACGCGGTCCTaGGTGAACATCCCAGGGCCC +
Preference number: 2 (lower is better)
Translates to: WARIPVRGMQRKGLYSLSRATRS*VNIPGP
Trigger: GGGCCCTGGGATGTTCACGCAGGACCGCGTTGCGCG...GCTGAGGGAGTACAGCCCCTTCCGCTGCATTCCCCGGACCGGGATCCTGGCCCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000622710.4
3UTR CAA 90 bp CTGGGTGCTCAGAGCCCACCTCTCACAGCCGCGGTCCCGGTCCAGTaGCTGTGTTTCTGTGCGACTTCCCTGTGGCGGCCAAGGGAGGGC +
Preference number: 2 (lower is better)
Translates to: LGAQSPPLTAAVPVQ*LCFCATSLWRPREG
Trigger: GCCCTCCCTTGGCCGCCACAGGGAAGTCGCACAGAAACACAGCAACTGGACCGGGACCGCGGCTGTGAGAGGTGGGCTCTGAGCACCCAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545517.2
3UTR-3UTR GCA 90 bp GCCAGGATCCCGGTCCGGGGAATGCAGCGGAAGGGGCTGTACTCCCTCAGCTGGCCTGCGGGCTGTTGTTaGGGACGCAGCAGCTGCTCT +
Preference number: 2 (lower is better)
Translates to: ARIPVRGMQRKGLYSLSWPAGCC*GRSSCS
Trigger: AGAGCAGCTGCTGCGTCCGCAACAACAGCCCGCAGG...CCAGCTGAGGGAGTACAGCCCCTTCCGCTGCATTCCCCGGACCGGGATCCTGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR-3UTR CCA 90 bp TGGGCCAGGATCCCGGTCCGGGGAATGCAGCGGAAGGGGCTGTACTCCCTCAGCCTCGTGTCTCCTGCATaGCTCCCCGATGCCCTGAAA +
Preference number: 2 (lower is better)
Translates to: WARIPVRGMQRKGLYSLSLVSPA*LPDALK
Trigger: TTTCAGGGCATCGGGGAGCCATGCAGGAGACACGAG...GCTGAGGGAGTACAGCCCCTTCCGCTGCATTCCCCGGACCGGGATCCTGGCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR CAA 90 bp CACTGCAGGAAGACGCTTTGGGGCGTGCACAACTCCTGCGGGCTGTaGTTGCGGACGCAGCAGCTGCTCTGGCACTCTGAGTCGTGCGAG +
Preference number: 2 (lower is better)
Translates to: HCRKTLWGVHNSCGL*LRTQQLLWHSESCE
Trigger: CTCGCACGACTCAGAGTGCCAGAGCAGCTGCTGCGTCCGCAACAACAGCCCGCAGGAGTTGTGCACGCCCCAAAGCGTCTTCCTGCAGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR-3UTR GCA 90 bp GGTCCGGGGAATGCAGCGGAAGGGGCTGTACTCCCTCAGCTGGATGCAGCACTGCACTCAGGAAAGGCCTaGCCTCTCCTTGGCTCCCCT +
Preference number: 2 (lower is better)
Translates to: GPGNAAEGAVLPQLDAALHSGKA*PLLGSP
Trigger: AGGGGAGCCAAGGAGAGGGCAGGCCTTTCCTGAGTG...CAGTGCTGCATCCAGCTGAGGGAGTACAGCCCCTTCCGCTGCATTCCCCGGACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR-3UTR GCA 90 bp CCTGATGGCTGCTGCAGAAGTCGCCGTTGGGCTTGCGCCAGGGCACACACTGCAACTCCTCGTGTCTCCTaGATGGCTCCCCGATGCCCT +
Preference number: 2 (lower is better)
Translates to: PDGCCRSRRWACARAHTATPRVS*MAPRCP
Trigger: AGGGCATCGGGGAGCCATGCAGGAGACACGAGGAGT...TGCAGTGTGTGCCCTGGCGCAAGCCCAACGGCGACTTCTGCAGCAGCCATCAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR-3UTR GCA 90 bp GTCCGGGGAATGCAGCGGAAGGGGCTGTACTCCCTCAGCTGGATGCAGCACTGGTGCGGACGCAGCAGCTaGTCTGGCACTCTGAGTCGT +
Preference number: 2 (lower is better)
Translates to: VRGMQRKGLYSLSWMQHWCGRSS*SGTLSR
Trigger: ACGACTCAGAGTGCCAGAGCAGCTGCTGCGTCCGCA...CCAGTGCTGCATCCAGCTGAGGGAGTACAGCCCCTTCCGCTGCATTCCCCGGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR-3UTR GCA 90 bp GTCCGGGGAATGCAGCGGAAGGGGCTGTACTCCCTCAGCTGGATGCAGCACTGGAGACGCTTTGGGGCGTaGACAACTCCTGCGGGCTGT +
Preference number: 2 (lower is better)
Translates to: VRGMQRKGLYSLSWMQHWRRFGA*TTPAGC
Trigger: ACAGCCCGCAGGAGTTGTGCACGCCCCAAAGCGTCT...CCAGTGCTGCATCCAGCTGAGGGAGTACAGCCCCTTCCGCTGCATTCCCCGGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR-3UTR CCA 90 bp TGTTCTCACAGACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACCACAGGGGCAGGCACTaGGCCAGGATCCCGGTCCGG +
Preference number: 2 (lower is better)
Translates to: CSHRHFAPPGWSQPFSSHHRGRH*ARIPVR
Trigger: CCGGACCGGGATCCTGGCCCAGTGCCTGCCCCTGTG...GTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGTCTGTGAGAACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000544018.6
ENST00000622710.4
3UTR-3UTR CCA 90 bp GTGACACTCCTGATGGCTGCTGCAGAAGTCGCCGTTGGGCTTGCGCCAGGGCACACGCAGCAGCTGCTCTaGCACTCTGAGTCGTGCGAG +
Preference number: 2 (lower is better)
Translates to: VTLLMAAAEVAVGLAPGHTQQLL*HSESCE
Trigger: CTCGCACGACTCAGAGTGCCAGAGCAGCTGCTGCGT...GTGCCCTGGCGCAAGCCCAACGGCGACTTCTGCAGCAGCCATCAGGAGTGTCAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR CAA 90 bp TGCAGGAAGACGCTTTGGGGCGTGCACAACTCCTGCGGGCTGTTGTaGCGGACGCAGCAGCTGCTCTGGCACTCTGAGTCGTGCGAGCAT +
Preference number: 2 (lower is better)
Translates to: CRKTLWGVHNSCGLL*RTQQLLWHSESCEH
Trigger: ATGCTCGCACGACTCAGAGTGCCAGAGCAGCTGCTGCGTCCGCAACAACAGCCCGCAGGAGTTGTGCACGCCCCAAAGCGTCTTCCTGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR-3UTR GCA 90 bp CTCACAGACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGATCGCGCAACGCGGTCCTaGGTGAACATCCCAGGGCCC +
Preference number: 2 (lower is better)
Translates to: LTDTSRHQAGHSLSVPTDRATRS*VNIPGP
Trigger: GGGCCCTGGGATGTTCACGCAGGACCGCGTTGCGCG...ATCTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGTCTGTGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
3UTR-3UTR GCA 90 bp TCCGGGGAATGCAGCGGAAGGGGCTGTACTCCCTCAGCTGGATGCAGCACTGGCTGCATGGCTCCCCGATaGCCTGAAACACCACTCACC +
Preference number: 2 (lower is better)
Translates to: SGECSGRGCTPSAGCSTGCMAPR*PETPLT
Trigger: GGTGAGTGGTGTTTCAGGGCATCGGGGAGCCATGCA...GCCAGTGCTGCATCCAGCTGAGGGAGTACAGCCCCTTCCGCTGCATTCCCCGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR-3UTR GCA 90 bp GCACTGGCTGTGACACTCCTGATGGCTGCTGCAGAAGTCGCCGTTGGGCTTGCGAGACGCTTTGGGGCGTaGACAACTCCTGCGGGCTGT +
Preference number: 2 (lower is better)
Translates to: ALAVTLLMAAAEVAVGLARRFGA*TTPAGC
Trigger: ACAGCCCGCAGGAGTTGTGCACGCCCCAAAGCGTCT...CGCAAGCCCAACGGCGACTTCTGCAGCAGCCATCAGGAGTGTCACAGCCAGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR-3UTR CCA 90 bp CTGAGTCGTGCGAGCATCTGTACCCATTGGGCTCACCTTCCTCCAGGGCAGGCAGGCCTGCCCTCTCCTTaGCTCCCCTGTGTCACCATC +
Preference number: 2 (lower is better)
Translates to: LSRASICTHWAHLPPGQAGLPSP*LPCVTI
Trigger: GATGGTGACACAGGGGAGCCAAGGAGAGGGCAGGCC...TGCCTGCCCTGGAGGAAGGTGAGCCCAATGGGTACAGATGCTCGCACGACTCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000545517.2
3UTR-3UTR CCA 90 bp CAGAAGTCGCCGTTGGGCTTGCGCCAGGGCACACACTGCAGGAAGACGCTTTGGGGTGCAGAGCGTGTGTaGGGCCAGGCTGTTGATGGT +
Preference number: 2 (lower is better)
Translates to: QKSPLGLRQGTHCRKTLWGAERV*GQAVDG
Trigger: ACCATCAACAGCCTGGCCCCACACACGCTCTGCACC...CCAAAGCGTCTTCCTGCAGTGTGTGCCCTGGCGCAAGCCCAACGGCGACTTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR-3UTR GCA 90 bp TGCAGCACTGGCTGTGACACTCCTGATGGCTGCTGCAGAAGTCGCCGTTGGGCTCTCCAGGGCAGGCACTaGAGGAAGATGGTCTTAGGG +
Preference number: 2 (lower is better)
Translates to: CSTGCDTPDGCCRSRRWALQGRH*RKMVLG
Trigger: CCCTAAGACCATCTTCCTGCAGTGCCTGCCCTGGAG...AGCCCAACGGCGACTTCTGCAGCAGCCATCAGGAGTGTCACAGCCAGTGCTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR-3UTR CCA 90 bp ACAATCAGGCTACACCCCAGTGCCTGGGATTTGTTCTCACAGACACTTCGCGCCAAGGGAAGCTTCCGCTaGAACCAGCCCCCGCGCAAC +
Preference number: 2 (lower is better)
Translates to: TIRLHPSAWDLFSQTLRAKGSFR*NQPPRN
Trigger: GTTGCGCGGGGGCTGGTTCCAGCGGAAGCTTCCCTT...GGCGCGAAGTGTCTGTGAGAACAAATCCCAGGCACTGGGGTGTAGCCTGATTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
3UTR CAA 90 bp AGGAAGATGGTCTTAGGGGTGCAGAGCGTGTGTGGGGCCAGGCTGTaGATGGTACAGCAGTTGCTCTGGCACTCCTCGTGTCTCCTGCAT +
Preference number: 2 (lower is better)
Translates to: RKMVLGVQSVCGARL*MVQQLLWHSSCLLH
Trigger: ATGCAGGAGACACGAGGAGTGCCAGAGCAACTGCTGTACCATCAACAGCCTGGCCCCACACACGCTCTGCACCCCTAAGACCATCTTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR-3UTR GCA 90 bp CACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGATTTTCAGAGCACTCAGGAAAGGCCTaGCCTCTCCTTGGCTCCCCT +
Preference number: 2 (lower is better)
Translates to: HFAPPGWSQPFSSHRFSEHSGKA*PLLGSP
Trigger: AGGGGAGCCAAGGAGAGGGCAGGCCTTTCCTGAGTG...CTCTGAAAATCTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000622710.4
3UTR-3UTR GCA 90 bp CACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGATTTTCAGAGACTCCTCGTGTCTCCTaGATGGCTCCCCGATGCCCT +
Preference number: 2 (lower is better)
Translates to: HFAPPGWSQPFSSHRFSETPRVS*MAPRCP
Trigger: AGGGCATCGGGGAGCCATGCAGGAGACACGAGGAGT...CTCTGAAAATCTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000622710.4
3UTR-3UTR CCA 90 bp ACAATCAGGCTACACCCCAGTGCCTGGGATTTGTTCTCACAGACACTTCGCGCCTCGCTCACCTGTTCCTaGGCAGGGCCTGCAGACTCA +
Preference number: 2 (lower is better)
Translates to: TIRLHPSAWDLFSQTLRASLTCS*AGPADS
Trigger: TGAGTCTGCAGGCCCTGCCCAGGAACAGGTGAGCGA...GGCGCGAAGTGTCTGTGAGAACAAATCCCAGGCACTGGGGTGTAGCCTGATTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000622710.4
3UTR-3UTR CCA 90 bp TTGATGTTTAACAATCAGGCTACACCCCAGTGCCTGGGATTTGTTCTCACAGACAAGGGAAGCTTCCGCTaGAACCAGCCCCCGCGCAAC +
Preference number: 2 (lower is better)
Translates to: LMFNNQATPQCLGFVLTDKGSFR*NQPPRN
Trigger: GTTGCGCGGGGGCTGGTTCCAGCGGAAGCTTCCCTT...GTCTGTGAGAACAAATCCCAGGCACTGGGGTGTAGCCTGATTGTTAAACATCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
3UTR TCA 72 bp CCGCTGGAACCAGCCCCCGCGCAACGCGGTCCTGCGTaGACATCCCAGGGCCCAGGCCGGTCCCTCGCGCCC +
Preference number: 3 (lower is better)
Translates to: PLEPAPAQRGPA*TSQGPGRSLAP
Trigger: GGGCGCGAGGGACCGGCCTGGGCCCTGGGATGTTCACGCAGGACCGCGTTGCGCGGGGGCTGGTTCCAGCGG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
3UTR GCA 72 bp GCTTCCGCTGGAACCAGCCCCCGCGCAACGCGGTCCTaGGTGAACATCCCAGGGCCCAGGCCGGTCCCTCGC +
Preference number: 3 (lower is better)
Translates to: ASAGTSPRATRS*VNIPGPRPVPR
Trigger: GCGAGGGACCGGCCTGGGCCCTGGGATGTTCACGCAGGACCGCGTTGCGCGGGGGCTGGTTCCAGCGGAAGC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
3UTR CCA 72 bp GGCGGTGAAGCGCCGGCCTCTCCCAGCAGGGGTGCCTaGGTGCTCAGAGCCCACCTCTCACAGCCGCGGTCC +
Preference number: 3 (lower is better)
Translates to: GGEAPASPSRGA*VLRAHLSQPRS
Trigger: GGACCGCGGCTGTGAGAGGTGGGCTCTGAGCACCCAGGCACCCCTGCTGGGAGAGGCCGGCGCTTCACCGCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000545517.2
3UTR TCA 72 bp GACTTCCCTGTGGCGGCCAAGGGAGGGCCTGGAGGCTaGGCCCCCGCCCGGGACTTACCAGGGGCAGGCACT +
Preference number: 3 (lower is better)
Translates to: DFPVAAKGGPGG*APARDLPGAGT
Trigger: AGTGCCTGCCCCTGGTAAGTCCCGGGCGGGGGCTCAGCCTCCAGGCCCTCCCTTGGCCGCCACAGGGAAGTC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000545517.2
3UTR-3UTR CAA 90 bp GCCAGGATCCCGGTCCGGGGAATGCAGCGGAAGGGGCTGTACTCCCTCAGCTGGTCCTGCGGGCTGTTGTaGCGGACGCAGCAGCTGCTC +
Preference number: 3 (lower is better)
Translates to: ARIPVRGMQRKGLYSLSWSCGLL*RTQQLL
Trigger: GAGCAGCTGCTGCGTCCGCAACAACAGCCCGCAGGA...CCAGCTGAGGGAGTACAGCCCCTTCCGCTGCATTCCCCGGACCGGGATCCTGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR-3UTR CAA 90 bp TGGGCCAGGATCCCGGTCCGGGGAATGCAGCGGAAGGGGCTGTACTCCCTCAGCAAGTCGCCGTTGGGCTaGCGCCAGGGCACACACTGC +
Preference number: 3 (lower is better)
Translates to: WARIPVRGMQRKGLYSLSKSPLG*RQGTHC
Trigger: GCAGTGTGTGCCCTGGCGCAAGCCCAACGGCGACTT...GCTGAGGGAGTACAGCCCCTTCCGCTGCATTCCCCGGACCGGGATCCTGGCCCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR CCA 72 bp CGCCCAGGTTCGAGCTCACATCACAGGGGCAGGCACTaGGCCAGGATCCCGGTCCGGGGAATGCAGCGGAAG +
Preference number: 3 (lower is better)
Translates to: RPGSSSHHRGRH*ARIPVRGMQRK
Trigger: CTTCCGCTGCATTCCCCGGACCGGGATCCTGGCCCAGTGCCTGCCCCTGTGATGTGAGCTCGAACCTGGGCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000544018.6
ENST00000622710.4
3UTR GCA 72 bp GCCAGGGCACACACTGCAGGAAGACGCTTTGGGGCGTaGACAACTCCTGCGGGCTGTTGTTGCGGACGCAGC +
Preference number: 3 (lower is better)
Translates to: ARAHTAGRRFGA*TTPAGCCCGRS
Trigger: GCTGCGTCCGCAACAACAGCCCGCAGGAGTTGTGCACGCCCCAAAGCGTCTTCCTGCAGTGTGTGCCCTGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR GCA 72 bp CGCTTTGGGGCGTGCACAACTCCTGCGGGCTGTTGTTaGGGACGCAGCAGCTGCTCTGGCACTCTGAGTCGT +
Preference number: 3 (lower is better)
Translates to: RFGACTTPAGCC*GRSSCSGTLSR
Trigger: ACGACTCAGAGTGCCAGAGCAGCTGCTGCGTCCGCAACAACAGCCCGCAGGAGTTGTGCACGCCCCAAAGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR GCA 72 bp CACTGCAGGAAGACGCTTTGGGGCGTGCACAACTCCTaGGGGCTGTTGTTGCGGACGCAGCAGCTGCTCTGG +
Preference number: 3 (lower is better)
Translates to: HCRKTLWGVHNS*GLLLRTQQLLW
Trigger: CCAGAGCAGCTGCTGCGTCCGCAACAACAGCCCGCAGGAGTTGTGCACGCCCCAAAGCGTCTTCCTGCAGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR GCA 72 bp CAGAAGTCGCCGTTGGGCTTGCGCCAGGGCACACACTaGAGGAAGACGCTTTGGGGCGTGCACAACTCCTGC +
Preference number: 3 (lower is better)
Translates to: QKSPLGLRQGTH*RKTLWGVHNSC
Trigger: GCAGGAGTTGTGCACGCCCCAAAGCGTCTTCCTGCAGTGTGTGCCCTGGCGCAAGCCCAACGGCGACTTCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR GCA 72 bp GGATGCAGCACTGGCTGTGACACTCCTGATGGCTGCTaGAGAAGTCGCCGTTGGGCTTGCGCCAGGGCACAC +
Preference number: 3 (lower is better)
Translates to: GCSTGCDTPDGC*RSRRWACARAH
Trigger: GTGTGCCCTGGCGCAAGCCCAACGGCGACTTCTGCAGCAGCCATCAGGAGTGTCACAGCCAGTGCTGCATCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR-3UTR CAA 90 bp AGGAAGACGCTTTGGGGCGTGCACAACTCCTGCGGGCTGTTGTTGCGGACGCAGAGGCCTGCCCTCTCCTaGGCTCCCCTGTGTCACCAT +
Preference number: 3 (lower is better)
Translates to: RKTLWGVHNSCGLLLRTQRPALS*APLCHH
Trigger: ATGGTGACACAGGGGAGCCAAGGAGAGGGCAGGCCT...CTGCGTCCGCAACAACAGCCCGCAGGAGTTGTGCACGCCCCAAAGCGTCTTCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000545517.2
3UTR GCA 72 bp TTGCGGACGCAGCAGCTGCTCTGGCACTCTGAGTCGTaGGAGCATCTGTACCCATTGGGCTTCCTCCAGGGC +
Preference number: 3 (lower is better)
Translates to: LRTQQLLWHSES*EHLYPLGFLQG
Trigger: GCCCTGGAGGAAGCCCAATGGGTACAGATGCTCGCACGACTCAGAGTGCCAGAGCAGCTGCTGCGTCCGCAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000622710.4
3UTR-3UTR CAA 90 bp CAGAAGTCGCCGTTGGGCTTGCGCCAGGGCACACACTGCAGGAAGACGCTTTGGTGTGGGGCCAGGCTGTaGATGGTACAGCAGTTGCTC +
Preference number: 3 (lower is better)
Translates to: QKSPLGLRQGTHCRKTLWCGARL*MVQQLL
Trigger: GAGCAACTGCTGTACCATCAACAGCCTGGCCCCACA...CCAAAGCGTCTTCCTGCAGTGTGTGCCCTGGCGCAAGCCCAACGGCGACTTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR GCA 72 bp TCTGGCACTCCTCGTGTCTCCTGCATGGCTCCCCGATaGCCTGAAACACCACTCACCAGCTCGCTCACCTGT +
Preference number: 3 (lower is better)
Translates to: SGTPRVSCMAPR*PETPLTSSLTC
Trigger: ACAGGTGAGCGAGCTGGTGAGTGGTGTTTCAGGGCATCGGGGAGCCATGCAGGAGACACGAGGAGTGCCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR GCA 72 bp TTGCGGACGCAGCAGCTGCTCTGGCACTCTGAGTCGTaGGAGCATCTGTACCCATTGGGCTCACCTTCCTCC +
Preference number: 3 (lower is better)
Translates to: LRTQQLLWHSES*EHLYPLGSPSS
Trigger: GGAGGAAGGTGAGCCCAATGGGTACAGATGCTCGCACGACTCAGAGTGCCAGAGCAGCTGCTGCGTCCGCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545517.2
3UTR GCA 72 bp ACAACTCCTGCGGGCTGTTGTTGCGGACGCAGCAGCTaGTCTGGCACTCTGAGTCGTGCGAGCATCTGTACC +
Preference number: 3 (lower is better)
Translates to: TTPAGCCCGRSS*SGTLSRASICT
Trigger: GGTACAGATGCTCGCACGACTCAGAGTGCCAGAGCAGCTGCTGCGTCCGCAACAACAGCCCGCAGGAGTTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR CCA 72 bp AGAAACAGCAGCACAAACCGTAAGGGAAGCTTCCGCTaGAACCAGCCCCCGCGCAACGCGGTCCTGCGTGAA +
Preference number: 3 (lower is better)
Translates to: RNSSTNRKGSFR*NQPPRNAVLRE
Trigger: TTCACGCAGGACCGCGTTGCGCGGGGGCTGGTTCCAGCGGAAGCTTCCCTTACGGTTTGTGCTGCTGTTTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
3UTR CCA 72 bp CCTGAAACACCACTCACCAGCTCGCTCACCTGTTCCTaGGCAGGGCCTGCAGACTCAGCACTCAGGAAAGGC +
Preference number: 3 (lower is better)
Translates to: PETPLTSSLTCS*AGPADSALRKG
Trigger: GCCTTTCCTGAGTGCTGAGTCTGCAGGCCCTGCCCAGGAACAGGTGAGCGAGCTGGTGAGTGGTGTTTCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR CCA 72 bp TGTGGGGCCAGGCTGTTGATGGTACAGCAGTTGCTCTaGCACTCCTCGTGTCTCCTGCATGGCTCCCCGATG +
Preference number: 3 (lower is better)
Translates to: CGARLLMVQQLL*HSSCLLHGSPM
Trigger: CATCGGGGAGCCATGCAGGAGACACGAGGAGTGCCAGAGCAACTGCTGTACCATCAACAGCCTGGCCCCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR CCA 72 bp TCCTGCGGGCTGTTGTTGCGGACGCAGCAGCTGCTCTaGCACTCTGAGTCGTGCGAGCATCTGTACCCATTG +
Preference number: 3 (lower is better)
Translates to: SCGLLLRTQQLL*HSESCEHLYPL
Trigger: CAATGGGTACAGATGCTCGCACGACTCAGAGTGCCAGAGCAGCTGCTGCGTCCGCAACAACAGCCCGCAGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR GCA 72 bp TGGTACAGCAGTTGCTCTGGCACTCCTCGTGTCTCCTaGATGGCTCCCCGATGCCCTGAAACACCACTCACC +
Preference number: 3 (lower is better)
Translates to: WYSSCSGTPRVS*MAPRCPETPLT
Trigger: GGTGAGTGGTGTTTCAGGGCATCGGGGAGCCATGCAGGAGACACGAGGAGTGCCAGAGCAACTGCTGTACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR CCA 72 bp CTGCAGGAAGATGGTCTTAGGGGTGCAGAGCGTGTGTaGGGCCAGGCTGTTGATGGTACAGCAGTTGCTCTG +
Preference number: 3 (lower is better)
Translates to: LQEDGLRGAERV*GQAVDGTAVAL
Trigger: CAGAGCAACTGCTGTACCATCAACAGCCTGGCCCCACACACGCTCTGCACCCCTAAGACCATCTTCCTGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR-3UTR CAA 90 bp AGCTGCTCTGGCACTCTGAGTCGTGCGAGCATCTGTACCCATTGGGCTTCCTCCTTGATGGTACAGCAGTaGCTCTGGCACTCCTCGTGT +
Preference number: 3 (lower is better)
Translates to: SCSGTLSRASICTHWASSLMVQQ*LWHSSC
Trigger: ACACGAGGAGTGCCAGAGCAACTGCTGTACCATCAA...GGAGGAAGCCCAATGGGTACAGATGCTCGCACGACTCAGAGTGCCAGAGCAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000622710.4
3UTR GCA 72 bp CCTTTATTGATGTTTAACAATCAGGCTACACCCCAGTaGCTGGGATTTGTTCTCACAGACACTTCGCGCCAC +
Preference number: 3 (lower is better)
Translates to: PLLMFNNQATPQ*LGFVLTDTSRH
Trigger: GTGGCGCGAAGTGTCTGTGAGAACAAATCCCAGGCACTGGGGTGTAGCCTGATTGTTAAACATCAATAAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000376608.9
ENST00000544018.6
CDS-3UTR GCA 90 bp GCAACGCGGTCCTGCGTGAACATCCCAGGGCCCAGGCCGGTCCCTCGCGCCCAGCGCGCAACGCGGTCCTaGGTGAACATCCCAGGGCCC +
Preference number: 4 (lower is better)
Translates to: ATRSCVNIPGPRPVPRAQRATRS*VNIPGP
Trigger: GGGCCCTGGGATGTTCACGCAGGACCGCGTTGCGCG...CTGGGCGCGAGGGACCGGCCTGGGCCCTGGGATGTTCACGCAGGACCGCGTTGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CCA 90 bp GCCGGTCCCTCGCGCCCAGGTTCGAGCTCACATCACAGGGGCAGGCACTGGGCCCACAGGGGCAGGCACTaGGCCAGGATCCCGGTCCGG +
Preference number: 4 (lower is better)
Translates to: AGPSRPGSSSHHRGRHWAHRGRH*ARIPVR
Trigger: CCGGACCGGGATCCTGGCCCAGTGCCTGCCCCTGTG...GGCCCAGTGCCTGCCCCTGTGATGTGAGCTCGAACCTGGGCGCGAGGGACCGGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000544018.6
ENST00000622710.4
CDS-3UTR GCA 90 bp TCCGCTGGAACCAGCCCCCGCGCAACGCGGTCCTGCGTGAACATCCCAGGGCCCCGCGCAACGCGGTCCTaGGTGAACATCCCAGGGCCC +
Preference number: 4 (lower is better)
Translates to: SAGTSPRATRSCVNIPGPRATRS*VNIPGP
Trigger: GGGCCCTGGGATGTTCACGCAGGACCGCGTTGCGCG...GGGCCCTGGGATGTTCACGCAGGACCGCGTTGCGCGGGGGCTGGTTCCAGCGGA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CCA 90 bp GCTTCCGCTGGAACCAGCCCCCGCGCAACGCGGTCCTGCGTGAACATCCCAGGGCACAGGGGCAGGCACTaGGCCAGGATCCCGGTCCGG +
Preference number: 4 (lower is better)
Translates to: ASAGTSPRATRSCVNIPGHRGRH*ARIPVR
Trigger: CCGGACCGGGATCCTGGCCCAGTGCCTGCCCCTGTG...CCCTGGGATGTTCACGCAGGACCGCGTTGCGCGGGGGCTGGTTCCAGCGGAAGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR GCA 90 bp AGCCCCCGCGCAACGCGGTCCTGCGTGAACATCCCAGGGCCCAGGCCGGTCCCTCGCCAGGGCACACACTaGAGGAAGACGCTTTGGGGC +
Preference number: 4 (lower is better)
Translates to: SPRATRSCVNIPGPRPVPRQGTH*RKTLWG
Trigger: GCCCCAAAGCGTCTTCCTGCAGTGTGTGCCCTGGCG...AGGGACCGGCCTGGGCCCTGGGATGTTCACGCAGGACCGCGTTGCGCGGGGGCT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CCA 90 bp CCGCGCAACGCGGTCCTGCGTGAACATCCCAGGGCCCAGGCCGGTCCCTCGCGCGGTGCAGAGCGTGTGTaGGGCCAGGCTGTTGATGGT +
Preference number: 4 (lower is better)
Translates to: PRNAVLREHPRAQAGPSRGAERV*GQAVDG
Trigger: ACCATCAACAGCCTGGCCCCACACACGCTCTGCACC...GCGCGAGGGACCGGCCTGGGCCCTGGGATGTTCACGCAGGACCGCGTTGCGCGG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR TCA 90 bp GACACTCCTGATGGCTGCTGCAGAAGTCGCCGTTGGGCTTGCGCCAGGGCACACGGAGGGCCTGGAGGCTaGGCCCCCGCCCGGGACTTA +
Preference number: 4 (lower is better)
Translates to: DTPDGCCRSRRWACARAHGGPGG*APARDL
Trigger: TAAGTCCCGGGCGGGGGCTCAGCCTCCAGGCCCTCC...GTGTGCCCTGGCGCAAGCCCAACGGCGACTTCTGCAGCAGCCATCAGGAGTGTC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000545517.2
CDS-3UTR GCA 90 bp AACCAGCCCCCGCGCAACGCGGTCCTGCGTGAACATCCCAGGGCCCAGGCCGGTGGCGTGCACAACTCCTaGGGGCTGTTGTTGCGGACG +
Preference number: 4 (lower is better)
Translates to: NQPPRNAVLREHPRAQAGGVHNS*GLLLRT
Trigger: CGTCCGCAACAACAGCCCGCAGGAGTTGTGCACGCC...ACCGGCCTGGGCCCTGGGATGTTCACGCAGGACCGCGTTGCGCGGGGGCTGGTT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR GCA 90 bp CAGCCCCCGCGCAACGCGGTCCTGCGTGAACATCCCAGGGCCCAGGCCGGTCCCACTCCTGATGGCTGCTaGAGAAGTCGCCGTTGGGCT +
Preference number: 4 (lower is better)
Translates to: QPPRNAVLREHPRAQAGPTPDGC*RSRRWA
Trigger: AGCCCAACGGCGACTTCTGCAGCAGCCATCAGGAGT...GGGACCGGCCTGGGCCCTGGGATGTTCACGCAGGACCGCGTTGCGCGGGGGCTG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CCA 90 bp CGCAACGCGGTCCTGCGTGAACATCCCAGGGCCCAGGCCGGTCCCTCGCGCCCACGGCCATCGGGTGTGTaGACCTTTTTCCGTCAGGCG +
Preference number: 4 (lower is better)
Translates to: RNAVLREHPRAQAGPSRPRPSGV*TFFRQA
Trigger: CGCCTGACGGAAAAAGGTCCACACACCCGATGGCCG...TGGGCGCGAGGGACCGGCCTGGGCCCTGGGATGTTCACGCAGGACCGCGTTGCG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CCA 90 bp GCCGGTCCCTCGCGCCCAGGTTCGAGCTCACATCACAGGGGCAGGCACTGGGCCAAGGGAAGCTTCCGCTaGAACCAGCCCCCGCGCAAC +
Preference number: 4 (lower is better)
Translates to: AGPSRPGSSSHHRGRHWAKGSFR*NQPPRN
Trigger: GTTGCGCGGGGGCTGGTTCCAGCGGAAGCTTCCCTT...GGCCCAGTGCCTGCCCCTGTGATGTGAGCTCGAACCTGGGCGCGAGGGACCGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CCA 90 bp TTGGGGCGTGCACAACTCCTGCGGGCTGTTGTTGCGGACGCAGCAGCTGCTCTGCCCTGCGGGGCCTGGTaGGCTCAGTGCCAGCCCAGG +
Preference number: 4 (lower is better)
Translates to: LGRAQLLRAVVADAAAALPCGAW*AQCQPR
Trigger: CCTGGGCTGGCACTGAGCCCACCAGGCCCCGCAGGG...CAGAGCAGCTGCTGCGTCCGCAACAACAGCCCGCAGGAGTTGTGCACGCCCCAA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000545517.2
CDS-3UTR CCA 90 bp AACCAGCCCCCGCGCAACGCGGTCCTGCGTGAACATCCCAGGGCCCAGGCCGGTCGGCCATCGGGTGTGTaGACCTTTTTCCGTCAGGCG +
Preference number: 4 (lower is better)
Translates to: NQPPRNAVLREHPRAQAGRPSGV*TFFRQA
Trigger: CGCCTGACGGAAAAAGGTCCACACACCCGATGGCCG...ACCGGCCTGGGCCCTGGGATGTTCACGCAGGACCGCGTTGCGCGGGGGCTGGTT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR TCA 90 bp GACACTCCTGATGGCTGCTGCAGAAGTCGCCGTTGGGCTTGCGCCAGGGCACACCAACGCGGTCCTGCGTaGACATCCCAGGGCCCAGGC +
Preference number: 4 (lower is better)
Translates to: DTPDGCCRSRRWACARAHQRGPA*TSQGPG
Trigger: GCCTGGGCCCTGGGATGTTCACGCAGGACCGCGTTG...GTGTGCCCTGGCGCAAGCCCAACGGCGACTTCTGCAGCAGCCATCAGGAGTGTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000622710.4
CDS-3UTR GCA 90 bp GCCCAGGCCGGTCCCTCGCGCCCAGGTTCGAGCTCACATCACAGGGGCAGGCACCTCCAGGGCAGGCACTaGAGGAAGATGGTCTTAGGG +
Preference number: 4 (lower is better)
Translates to: AQAGPSRPGSSSHHRGRHLQGRH*RKMVLG
Trigger: CCCTAAGACCATCTTCCTGCAGTGCCTGCCCTGGAG...GTGCCTGCCCCTGTGATGTGAGCTCGAACCTGGGCGCGAGGGACCGGCCTGGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000544018.6
ENST00000622710.4
CDS-3UTR GCA 90 bp GGAAGCTTCCGCTGGAACCAGCCCCCGCGCAACGCGGTCCTGCGTGAACATCCCCCTGCGGGCTGTTGTTaGGGACGCAGCAGCTGCTCT +
Preference number: 4 (lower is better)
Translates to: GSFRWNQPPRNAVLREHPPAGCC*GRSSCS
Trigger: AGAGCAGCTGCTGCGTCCGCAACAACAGCCCGCAGG...GGGATGTTCACGCAGGACCGCGTTGCGCGGGGGCTGGTTCCAGCGGAAGCTTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR GCA 90 bp GCTTCCGCTGGAACCAGCCCCCGCGCAACGCGGTCCTGCGTGAACATCCCAGGGAGACGCTTTGGGGCGTaGACAACTCCTGCGGGCTGT +
Preference number: 4 (lower is better)
Translates to: ASAGTSPRATRSCVNIPGRRFGA*TTPAGC
Trigger: ACAGCCCGCAGGAGTTGTGCACGCCCCAAAGCGTCT...CCCTGGGATGTTCACGCAGGACCGCGTTGCGCGGGGGCTGGTTCCAGCGGAAGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR GCA 90 bp AACCAGCCCCCGCGCAACGCGGTCCTGCGTGAACATCCCAGGGCCCAGGCCGGTGACACTCCTGATGGCTaGTGCAGAAGTCGCCGTTGG +
Preference number: 4 (lower is better)
Translates to: NQPPRNAVLREHPRAQAGDTPDG*CRSRRW
Trigger: CCAACGGCGACTTCTGCAGCAGCCATCAGGAGTGTC...ACCGGCCTGGGCCCTGGGATGTTCACGCAGGACCGCGTTGCGCGGGGGCTGGTT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR GCA 90 bp TGGGCCAGGATCCCGGTCCGGGGAATGCAGCGGAAGGGGCTGTACTCCCTCAGCGTTCTGGCAGGTCAGTaGTGGGGGCCCGGGGCTTAT +
Preference number: 4 (lower is better)
Translates to: WARIPVRGMQRKGLYSLSVLAGQ*WGPGAY
Trigger: ATAAGCCCCGGGCCCCCAGCACTGACCTGCCAGAAC...GCTGAGGGAGTACAGCCCCTTCCGCTGCATTCCCCGGACCGGGATCCTGGCCCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000545517.2
CDS-3UTR GCA 90 bp ACCGTAAGGGAAGCTTCCGCTGGAACCAGCCCCCGCGCAACGCGGTCCTGCGTGTGCGGACGCAGCAGCTaGTCTGGCACTCTGAGTCGT +
Preference number: 4 (lower is better)
Translates to: TVREASAGTSPRATRSCVCGRSS*SGTLSR
Trigger: ACGACTCAGAGTGCCAGAGCAGCTGCTGCGTCCGCA...CACGCAGGACCGCGTTGCGCGGGGGCTGGTTCCAGCGGAAGCTTCCCTTACGGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CCA 90 bp CCGGTCCGGGGAATGCAGCGGAAGGGGCTGTACTCCCTCAGCTGGATGCAGCACGCCCATACCCTGCCATaGACCCCAGCAGCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: PVRGMQRKGLYSLSWMQHAHTLP*TPAAAA
Trigger: TGCTGCTGCTGCTGGGGTCCATGGCAGGGTATGGGC...GTGCTGCATCCAGCTGAGGGAGTACAGCCCCTTCCGCTGCATTCCCCGGACCGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR CCA 90 bp CAGCCCCCGCGCAACGCGGTCCTGCGTGAACATCCCAGGGCCCAGGCCGGTCCCGTTCAACTTCTTCTGTaGCCCATACCCTGCCATGGA +
Preference number: 4 (lower is better)
Translates to: QPPRNAVLREHPRAQAGPVQLLL*PIPCHG
Trigger: TCCATGGCAGGGTATGGGCCACAGAAGAAGTTGAAC...GGGACCGGCCTGGGCCCTGGGATGTTCACGCAGGACCGCGTTGCGCGGGGGCTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CCA 90 bp AGAAACAGCAGCACAAACCGTAAGGGAAGCTTCCGCTGGAACCAGCCCCCGCGCCACAGGGGCAGGCACTaGGCCAGGATCCCGGTCCGG +
Preference number: 4 (lower is better)
Translates to: RNSSTNRKGSFRWNQPPRHRGRH*ARIPVR
Trigger: CCGGACCGGGATCCTGGCCCAGTGCCTGCCCCTGTG...GCGCGGGGGCTGGTTCCAGCGGAAGCTTCCCTTACGGTTTGTGCTGCTGTTTCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CCA 90 bp GGGCGTGCACAACTCCTGCGGGCTGTTGTTGCGGACGCAGCAGCTGCTCTGGCAGGCCTGCCCTCTCCTTaGCTCCCCTGTGTCACCATC +
Preference number: 4 (lower is better)
Translates to: GRAQLLRAVVADAAAALAGLPSP*LPCVTI
Trigger: GATGGTGACACAGGGGAGCCAAGGAGAGGGCAGGCC...TGCCAGAGCAGCTGCTGCGTCCGCAACAACAGCCCGCAGGAGTTGTGCACGCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR CCA 90 bp CGTGTGTGGGGCCAGGCTGTTGATGGTACAGCAGTTGCTCTGGCACTCCTCGTGACCAGGGGCAGGCACTaGGCCAGGATCCCGGTCCGG +
Preference number: 4 (lower is better)
Translates to: RVWGQAVDGTAVALALLVTRGRH*ARIPVR
Trigger: CCGGACCGGGATCCTGGCCCAGTGCCTGCCCCTGGT...CACGAGGAGTGCCAGAGCAACTGCTGTACCATCAACAGCCTGGCCCCACACACG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000545517.2
CDS-3UTR CCA 90 bp CCACTCACCAGCTCGCTCACCTGTTCCTGGGCAGGGCCTGCAGACTCAGCACTCTGTGCGACTTCCCTGTaGCGGCCAAGGGAGGGCCTG +
Preference number: 4 (lower is better)
Translates to: PLTSSLTCSWAGPADSALCATSL*RPREGL
Trigger: CAGGCCCTCCCTTGGCCGCCACAGGGAAGTCGCACA...GAGTGCTGAGTCTGCAGGCCCTGCCCAGGAACAGGTGAGCGAGCTGGTGAGTGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545517.2
CDS-3UTR TCA 90 bp GCCAGGATCCCGGTCCGGGGAATGCAGCGGAAGGGGCTGTACTCCCTCAGCTGGGCTGCTCTGGCACTCTaGGTCGTGCGAGCATCTGTA +
Preference number: 4 (lower is better)
Translates to: ARIPVRGMQRKGLYSLSWAALAL*VVRASV
Trigger: TACAGATGCTCGCACGACTCAGAGTGCCAGAGCAGC...CCAGCTGAGGGAGTACAGCCCCTTCCGCTGCATTCCCCGGACCGGGATCCTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR TCA 90 bp GCCCCAGAAACAGCAGCACAAACCGTAAGGGAAGCTTCCGCTGGAACCAGCCCCCAACGCGGTCCTGCGTaGACATCCCAGGGCCCAGGC +
Preference number: 4 (lower is better)
Translates to: APETAAQTVREASAGTSPQRGPA*TSQGPG
Trigger: GCCTGGGCCCTGGGATGTTCACGCAGGACCGCGTTG...GGGGCTGGTTCCAGCGGAAGCTTCCCTTACGGTTTGTGCTGCTGTTTCTGGGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR GCA 90 bp AGCACAAACCGTAAGGGAAGCTTCCGCTGGAACCAGCCCCCGCGCAACGCGGTCCTGTGGCCCATACCCTaGCATGGACCCCAGCAGCAG +
Preference number: 4 (lower is better)
Translates to: STNRKGSFRWNQPPRNAVLWPIP*HGPQQQ
Trigger: CTGCTGCTGGGGTCCATGGCAGGGTATGGGCCACAG...GACCGCGTTGCGCGGGGGCTGGTTCCAGCGGAAGCTTCCCTTACGGTTTGTGCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR GCA 90 bp GCTCGCTCACCTGTTCCTGGGCAGGGCCTGCAGACTCAGCACTCAGGAAAGGCCCTGTGGCCCATACCCTaGCATGGACCCCAGCAGCAG +
Preference number: 4 (lower is better)
Translates to: ARSPVPGQGLQTQHSGKALWPIP*HGPQQQ
Trigger: CTGCTGCTGGGGTCCATGGCAGGGTATGGGCCACAG...GGCCTTTCCTGAGTGCTGAGTCTGCAGGCCCTGCCCAGGAACAGGTGAGCGAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR GCA 90 bp TCCGCTGGAACCAGCCCCCGCGCAACGCGGTCCTGCGTGAACATCCCAGGGCCCTGGCACTCTGAGTCGTaGGAGCATCTGTACCCATTG +
Preference number: 4 (lower is better)
Translates to: SAGTSPRATRSCVNIPGPWHSES*EHLYPL
Trigger: CAATGGGTACAGATGCTCGCACGACTCAGAGTGCCA...GGGCCCTGGGATGTTCACGCAGGACCGCGTTGCGCGGGGGCTGGTTCCAGCGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR GCA 90 bp CCACTCACCAGCTCGCTCACCTGTTCCTGGGCAGGGCCTGCAGACTCAGCACTCCCTGCGGGCTGTTGTTaGGGACGCAGCAGCTGCTCT +
Preference number: 4 (lower is better)
Translates to: PLTSSLTCSWAGPADSALPAGCC*GRSSCS
Trigger: AGAGCAGCTGCTGCGTCCGCAACAACAGCCCGCAGG...GAGTGCTGAGTCTGCAGGCCCTGCCCAGGAACAGGTGAGCGAGCTGGTGAGTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR GCA 90 bp TGCTGCAGAAGTCGCCGTTGGGCTTGCGCCAGGGCACACACTGCAGGAAGACGCGGCGTGCACAACTCCTaGGGGCTGTTGTTGCGGACG +
Preference number: 4 (lower is better)
Translates to: CCRSRRWACARAHTAGRRGVHNS*GLLLRT
Trigger: CGTCCGCAACAACAGCCCGCAGGAGTTGTGCACGCC...GCGTCTTCCTGCAGTGTGTGCCCTGGCGCAAGCCCAACGGCGACTTCTGCAGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR GCA 90 bp AGAAACAGCAGCACAAACCGTAAGGGAAGCTTCCGCTGGAACCAGCCCCCGCGCCGCGCAACGCGGTCCTaGGTGAACATCCCAGGGCCC +
Preference number: 4 (lower is better)
Translates to: RNSSTNRKGSFRWNQPPRRATRS*VNIPGP
Trigger: GGGCCCTGGGATGTTCACGCAGGACCGCGTTGCGCG...GCGCGGGGGCTGGTTCCAGCGGAAGCTTCCCTTACGGTTTGTGCTGCTGTTTCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR GCA 90 bp GCACTGGCTGTGACACTCCTGATGGCTGCTGCAGAAGTCGCCGTTGGGCTTGCGGCCTGGTGGGCTCAGTaGCAGCCCAGGAGCCTTCTC +
Preference number: 4 (lower is better)
Translates to: ALAVTLLMAAAEVAVGLAAWWAQ*QPRSLL
Trigger: GAGAAGGCTCCTGGGCTGGCACTGAGCCCACCAGGC...CGCAAGCCCAACGGCGACTTCTGCAGCAGCCATCAGGAGTGTCACAGCCAGTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545517.2
CDS-3UTR CCA 90 bp CCTGATGGCTGCTGCAGAAGTCGCCGTTGGGCTTGCGCCAGGGCACACACTGCAGCCCATACCCTGCCATaGACCCCAGCAGCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: PDGCCRSRRWACARAHTAAHTLP*TPAAAA
Trigger: TGCTGCTGCTGCTGGGGTCCATGGCAGGGTATGGGC...TGCAGTGTGTGCCCTGGCGCAAGCCCAACGGCGACTTCTGCAGCAGCCATCAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR CCA 90 bp AACCGTAAGGGAAGCTTCCGCTGGAACCAGCCCCCGCGCAACGCGGTCCTGCGTACGCAGCAGCTGCTCTaGCACTCTGAGTCGTGCGAG +
Preference number: 4 (lower is better)
Translates to: NRKGSFRWNQPPRNAVLRTQQLL*HSESCE
Trigger: CTCGCACGACTCAGAGTGCCAGAGCAGCTGCTGCGT...ACGCAGGACCGCGTTGCGCGGGGGCTGGTTCCAGCGGAAGCTTCCCTTACGGTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CCA 90 bp ACAAACCGTAAGGGAAGCTTCCGCTGGAACCAGCCCCCGCGCAACGCGGTCCTGAAGGGAAGCTTCCGCTaGAACCAGCCCCCGCGCAAC +
Preference number: 4 (lower is better)
Translates to: TNRKGSFRWNQPPRNAVLKGSFR*NQPPRN
Trigger: GTTGCGCGGGGGCTGGTTCCAGCGGAAGCTTCCCTT...CAGGACCGCGTTGCGCGGGGGCTGGTTCCAGCGGAAGCTTCCCTTACGGTTTGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CCA 90 bp TGCTGCAGAAGTCGCCGTTGGGCTTGCGCCAGGGCACACACTGCAGGAAGACGCGGCCTGCCCTCTCCTTaGCTCCCCTGTGTCACCATC +
Preference number: 4 (lower is better)
Translates to: CCRSRRWACARAHTAGRRGLPSP*LPCVTI
Trigger: GATGGTGACACAGGGGAGCCAAGGAGAGGGCAGGCC...GCGTCTTCCTGCAGTGTGTGCCCTGGCGCAAGCCCAACGGCGACTTCTGCAGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR CCA 90 bp TGCGGACGCAGCAGCTGCTCTGGCACTCTGAGTCGTGCGAGCATCTGTACCCATCCCAGCAGGGGTGCCTaGGTGCTCAGAGCCCACCTC +
Preference number: 4 (lower is better)
Translates to: CGRSSCSGTLSRASICTHPSRGA*VLRAHL
Trigger: GAGGTGGGCTCTGAGCACCCAGGCACCCCTGCTGGG...ATGGGTACAGATGCTCGCACGACTCAGAGTGCCAGAGCAGCTGCTGCGTCCGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000545517.2
CDS-3UTR GCA 90 bp GGTACAGCAGTTGCTCTGGCACTCCTCGTGTCTCCTGCATGGCTCCCCGATGCCCTGTGGCCCATACCCTaGCATGGACCCCAGCAGCAG +
Preference number: 4 (lower is better)
Translates to: GTAVALALLVSPAWLPDALWPIP*HGPQQQ
Trigger: CTGCTGCTGGGGTCCATGGCAGGGTATGGGCCACAG...GGCATCGGGGAGCCATGCAGGAGACACGAGGAGTGCCAGAGCAACTGCTGTACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR GCA 90 bp AGCACAAACCGTAAGGGAAGCTTCCGCTGGAACCAGCCCCCGCGCAACGCGGTCTGCGGACGCAGCAGCTaGTCTGGCACTCTGAGTCGT +
Preference number: 4 (lower is better)
Translates to: STNRKGSFRWNQPPRNAVCGRSS*SGTLSR
Trigger: ACGACTCAGAGTGCCAGAGCAGCTGCTGCGTCCGCA...GACCGCGTTGCGCGGGGGCTGGTTCCAGCGGAAGCTTCCCTTACGGTTTGTGCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR GCA 90 bp CCACTCACCAGCTCGCTCACCTGTTCCTGGGCAGGGCCTGCAGACTCAGCACTCTGCGGACGCAGCAGCTaGTCTGGCACTCTGAGTCGT +
Preference number: 4 (lower is better)
Translates to: PLTSSLTCSWAGPADSALCGRSS*SGTLSR
Trigger: ACGACTCAGAGTGCCAGAGCAGCTGCTGCGTCCGCA...GAGTGCTGAGTCTGCAGGCCCTGCCCAGGAACAGGTGAGCGAGCTGGTGAGTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR GCA 90 bp TCACCAGCTCGCTCACCTGTTCCTGGGCAGGGCCTGCAGACTCAGCACTCAGGACGCCAGGGCACACACTaGAGGAAGACGCTTTGGGGC +
Preference number: 4 (lower is better)
Translates to: SPARSPVPGQGLQTQHSGRQGTH*RKTLWG
Trigger: GCCCCAAAGCGTCTTCCTGCAGTGTGTGCCCTGGCG...TCCTGAGTGCTGAGTCTGCAGGCCCTGCCCAGGAACAGGTGAGCGAGCTGGTGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR GCA 90 bp GGGCGTGCACAACTCCTGCGGGCTGTTGTTGCGGACGCAGCAGCTGCTCTGGCAGTTGCTGTGTTTCTGTaGGACTTCCCTGTGGCGGCC +
Preference number: 4 (lower is better)
Translates to: GRAQLLRAVVADAAAALAVAVFL*DFPVAA
Trigger: GGCCGCCACAGGGAAGTCGCACAGAAACACAGCAAC...TGCCAGAGCAGCTGCTGCGTCCGCAACAACAGCCCGCAGGAGTTGTGCACGCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545517.2
CDS-3UTR GCA 90 bp ACACTGCAGGAAGACGCTTTGGGGCGTGCACAACTCCTGCGGGCTGTTGTTGCGGCAGGGGTGCCTGGGTaGTCAGAGCCCACCTCTCAC +
Preference number: 4 (lower is better)
Translates to: TLQEDALGRAQLLRAVVAAGVPG*SEPTSH
Trigger: GTGAGAGGTGGGCTCTGAGCACCCAGGCACCCCTGC...CGCAACAACAGCCCGCAGGAGTTGTGCACGCCCCAAAGCGTCTTCCTGCAGTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000545517.2
CDS-3UTR CCA 90 bp AGGGAAGCTTCCGCTGGAACCAGCCCCCGCGCAACGCGGTCCTGCGTGAACATCCTCGTGTCTCCTGCATaGCTCCCCGATGCCCTTATG +
Preference number: 4 (lower is better)
Translates to: REASAGTSPRATRSCVNILVSPA*LPDALM
Trigger: CATAAGGGCATCGGGGAGCCATGCAGGAGACACGAG...GATGTTCACGCAGGACCGCGTTGCGCGGGGGCTGGTTCCAGCGGAAGCTTCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000376608.9
ENST00000544018.6
CDS-3UTR CCA 90 bp GCAGCACAAACCGTAAGGGAAGCTTCCGCTGGAACCAGCCCCCGCGCAACGCGGTTCGCGCCACCAGGCTaGTCACAGCCTTTCAGTTCC +
Preference number: 4 (lower is better)
Translates to: AAQTVREASAGTSPRATRFAPPG*SQPFSS
Trigger: GGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAA...CCGCGTTGCGCGGGGGCTGGTTCCAGCGGAAGCTTCCCTTACGGTTTGTGCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR TCA 90 bp TGCTGCAGAAGTCGCCGTTGGGCTTGCGCCAGGGCACACACTGCAGGAAGACGCGCTGCTCTGGCACTCTaGGTCGTGCGAGCATCTGTA +
Preference number: 4 (lower is better)
Translates to: CCRSRRWACARAHTAGRRAALAL*VVRASV
Trigger: TACAGATGCTCGCACGACTCAGAGTGCCAGAGCAGC...GCGTCTTCCTGCAGTGTGTGCCCTGGCGCAAGCCCAACGGCGACTTCTGCAGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR GCA 90 bp AGCACAAACCGTAAGGGAAGCTTCCGCTGGAACCAGCCCCCGCGCAACGCGGTCCTCCAGGGCAGGCACTaGAGGAAGATGGTCTTAGGG +
Preference number: 4 (lower is better)
Translates to: STNRKGSFRWNQPPRNAVLQGRH*RKMVLG
Trigger: CCCTAAGACCATCTTCCTGCAGTGCCTGCCCTGGAG...GACCGCGTTGCGCGGGGGCTGGTTCCAGCGGAAGCTTCCCTTACGGTTTGTGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR GCA 90 bp AGGAAGACGCTTTGGGGCGTGCACAACTCCTGCGGGCTGTTGTTGCGGACGCAGTGCGGACGCAGCAGCTaGTCTGGCACTCTGAGTCGT +
Preference number: 4 (lower is better)
Translates to: RKTLWGVHNSCGLLLRTQCGRSS*SGTLSR
Trigger: ACGACTCAGAGTGCCAGAGCAGCTGCTGCGTCCGCA...CTGCGTCCGCAACAACAGCCCGCAGGAGTTGTGCACGCCCCAAAGCGTCTTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR GCA 90 bp GAATGCAGCGGAAGGGGCTGTACTCCCTCAGCTGGATGCAGCACTGGCTGTGACCCTGCGGGCTGTTGTTaGGGACGCAGCAGCTGCTCT +
Preference number: 4 (lower is better)
Translates to: ECSGRGCTPSAGCSTGCDPAGCC*GRSSCS
Trigger: AGAGCAGCTGCTGCGTCCGCAACAACAGCCCGCAGG...GTCACAGCCAGTGCTGCATCCAGCTGAGGGAGTACAGCCCCTTCCGCTGCATTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR GCA 90 bp TGCAGCACTGGCTGTGACACTCCTGATGGCTGCTGCAGAAGTCGCCGTTGGGCTGGCGTGCACAACTCCTaGGGGCTGTTGTTGCGGACG +
Preference number: 4 (lower is better)
Translates to: CSTGCDTPDGCCRSRRWAGVHNS*GLLLRT
Trigger: CGTCCGCAACAACAGCCCGCAGGAGTTGTGCACGCC...AGCCCAACGGCGACTTCTGCAGCAGCCATCAGGAGTGTCACAGCCAGTGCTGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR GCA 90 bp GACACTCCTGATGGCTGCTGCAGAAGTCGCCGTTGGGCTTGCGCCAGGGCACACGACACTCCTGATGGCTaGTGCAGAAGTCGCCGTTGG +
Preference number: 4 (lower is better)
Translates to: DTPDGCCRSRRWACARAHDTPDG*CRSRRW
Trigger: CCAACGGCGACTTCTGCAGCAGCCATCAGGAGTGTC...GTGTGCCCTGGCGCAAGCCCAACGGCGACTTCTGCAGCAGCCATCAGGAGTGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR GCA 90 bp ACTGGCTGTGACACTCCTGATGGCTGCTGCAGAAGTCGCCGTTGGGCTTGCGCCCACTCAGGAAAGGCCTaGCCTCTCCTTGGCTCCCCT +
Preference number: 4 (lower is better)
Translates to: TGCDTPDGCCRSRRWACAHSGKA*PLLGSP
Trigger: AGGGGAGCCAAGGAGAGGGCAGGCCTTTCCTGAGTG...GGCGCAAGCCCAACGGCGACTTCTGCAGCAGCCATCAGGAGTGTCACAGCCAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR GCA 90 bp CAGAAGTCGCCGTTGGGCTTGCGCCAGGGCACACACTGCAGGAAGACGCTTTGGCCCAGGAGCCTTCTCTaGGGCCCCCACCTTATGAGA +
Preference number: 4 (lower is better)
Translates to: QKSPLGLRQGTHCRKTLWPRSLL*GPHLMR
Trigger: TCTCATAAGGTGGGGGCCGCAGAGAAGGCTCCTGGG...CCAAAGCGTCTTCCTGCAGTGTGTGCCCTGGCGCAAGCCCAACGGCGACTTCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000545517.2
CDS-3UTR CCA 90 bp GATGCCCTGAAACACCACTCACCAGCTCGCTCACCTGTTCCTGGGCAGGGCCTGGGTGCAGAGCGTGTGTaGGGCCAGGCTGTTGATGGT +
Preference number: 4 (lower is better)
Translates to: DALKHHSPARSPVPGQGLGAERV*GQAVDG
Trigger: ACCATCAACAGCCTGGCCCCACACACGCTCTGCACC...CAGGCCCTGCCCAGGAACAGGTGAGCGAGCTGGTGAGTGGTGTTTCAGGGCATC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR CCA 90 bp ACAAACCGTAAGGGAAGCTTCCGCTGGAACCAGCCCCCGCGCAACGCGGTCCTGTGCAGGAAGACGCTTTaGGGCGTGCACAACTCCTGC +
Preference number: 4 (lower is better)
Translates to: TNRKGSFRWNQPPRNAVLCRKTL*GVHNSC
Trigger: GCAGGAGTTGTGCACGCCCCAAAGCGTCTTCCTGCA...CAGGACCGCGTTGCGCGGGGGCTGGTTCCAGCGGAAGCTTCCCTTACGGTTTGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CCA 90 bp GGTCCGGGGAATGCAGCGGAAGGGGCTGTACTCCCTCAGCTGGATGCAGCACTGTGCAGGAAGACGCTTTaGGGCGTGCACAACTCCTGC +
Preference number: 4 (lower is better)
Translates to: GPGNAAEGAVLPQLDAALCRKTL*GVHNSC
Trigger: GCAGGAGTTGTGCACGCCCCAAAGCGTCTTCCTGCA...CAGTGCTGCATCCAGCTGAGGGAGTACAGCCCCTTCCGCTGCATTCCCCGGACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR CCA 90 bp TTGGGGCGTGCACAACTCCTGCGGGCTGTTGTTGCGGACGCAGCAGCTGCTCTGCTCGTGTCTCCTGCATaGCTCCCCGATGCCCTGAAA +
Preference number: 4 (lower is better)
Translates to: LGRAQLLRAVVADAAAALLVSPA*LPDALK
Trigger: TTTCAGGGCATCGGGGAGCCATGCAGGAGACACGAG...CAGAGCAGCTGCTGCGTCCGCAACAACAGCCCGCAGGAGTTGTGCACGCCCCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR CCA 90 bp GCACACACTGCAGGAAGACGCTTTGGGGCGTGCACAACTCCTGCGGGCTGTTGTCCCCACCTTATGAGATaGGCGGTGAAGCGCCGGCCT +
Preference number: 4 (lower is better)
Translates to: AHTAGRRFGACTTPAGCCPHLMR*AVKRRP
Trigger: AGGCCGGCGCTTCACCGCCCATCTCATAAGGTGGGG...ACAACAGCCCGCAGGAGTTGTGCACGCCCCAAAGCGTCTTCCTGCAGTGTGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000545517.2
3UTR CAA 72 bp AAGACGCTTTGGGGCGTGCACAACTCCTGCGGGCTGTaGTTGCGGACGCAGCAGCTGCTCTGGCACTCTGAG +
Preference number: 4 (lower is better)
Translates to: KTLWGVHNSCGL*LRTQQLLWHSE
Trigger: CTCAGAGTGCCAGAGCAGCTGCTGCGTCCGCAACAACAGCCCGCAGGAGTTGTGCACGCCCCAAAGCGTCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR TCA 90 bp CAATCAGGCTACACCCCAGTGCCTGGGATTTGTTCTCACAGACACTTCGCGCCACAACGCGGTCCTGCGTaGACATCCCAGGGCCCAGGC +
Preference number: 4 (lower is better)
Translates to: QSGYTPVPGICSHRHFAPQRGPA*TSQGPG
Trigger: GCCTGGGCCCTGGGATGTTCACGCAGGACCGCGTTG...TGGCGCGAAGTGTCTGTGAGAACAAATCCCAGGCACTGGGGTGTAGCCTGATTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR GCA 90 bp CTGCAGGAAGACGCTTTGGGGCGTGCACAACTCCTGCGGGCTGTTGTTGCGGACCTCCAGGGCAGGCACTaGAGGAAGATGGTCTTAGGG +
Preference number: 4 (lower is better)
Translates to: LQEDALGRAQLLRAVVADLQGRH*RKMVLG
Trigger: CCCTAAGACCATCTTCCTGCAGTGCCTGCCCTGGAG...GTCCGCAACAACAGCCCGCAGGAGTTGTGCACGCCCCAAAGCGTCTTCCTGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR GCA 90 bp GCACACACTGCAGGAAGACGCTTTGGGGCGTGCACAACTCCTGCGGGCTGTTGTAGACGCTTTGGGGCGTaGACAACTCCTGCGGGCTGT +
Preference number: 4 (lower is better)
Translates to: AHTAGRRFGACTTPAGCCRRFGA*TTPAGC
Trigger: ACAGCCCGCAGGAGTTGTGCACGCCCCAAAGCGTCT...ACAACAGCCCGCAGGAGTTGTGCACGCCCCAAAGCGTCTTCCTGCAGTGTGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR GCA 90 bp CGTGTGTGGGGCCAGGCTGTTGATGGTACAGCAGTTGCTCTGGCACTCCTCGTGCACTCAGGAAAGGCCTaGCCTCTCCTTGGCTCCCCT +
Preference number: 4 (lower is better)
Translates to: RVWGQAVDGTAVALALLVHSGKA*PLLGSP
Trigger: AGGGGAGCCAAGGAGAGGGCAGGCCTTTCCTGAGTG...CACGAGGAGTGCCAGAGCAACTGCTGTACCATCAACAGCCTGGCCCCACACACG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR GCA 90 bp CAGAAGTCGCCGTTGGGCTTGCGCCAGGGCACACACTGCAGGAAGACGCTTTGGTGCATGGCTCCCCGATaGCCTGAAACACCACTCACC +
Preference number: 4 (lower is better)
Translates to: QKSPLGLRQGTHCRKTLWCMAPR*PETPLT
Trigger: GGTGAGTGGTGTTTCAGGGCATCGGGGAGCCATGCA...CCAAAGCGTCTTCCTGCAGTGTGTGCCCTGGCGCAAGCCCAACGGCGACTTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR CCA 90 bp ACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGATTTTCAGAAGCCCGGCAGTACGCTaGGCACAGTCGCAGCCCCGC +
Preference number: 4 (lower is better)
Translates to: TLRATRLVTAFQFPQIFRSPAVR*AQSQPR
Trigger: GCGGGGCTGCGACTGTGCCCAGCGTACTGCCGGGCT...TCTGAAAATCTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000376608.9
CDS-3UTR CCA 90 bp GAAACACCACTCACCAGCTCGCTCACCTGTTCCTGGGCAGGGCCTGCAGACTCAACGCAGCAGCTGCTCTaGCACTCTGAGTCGTGCGAG +
Preference number: 4 (lower is better)
Translates to: ETPLTSSLTCSWAGPADSTQQLL*HSESCE
Trigger: CTCGCACGACTCAGAGTGCCAGAGCAGCTGCTGCGT...TGAGTCTGCAGGCCCTGCCCAGGAACAGGTGAGCGAGCTGGTGAGTGGTGTTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR CCA 90 bp GAATGCAGCGGAAGGGGCTGTACTCCCTCAGCTGGATGCAGCACTGGCTGTGACACGCAGCAGCTGCTCTaGCACTCTGAGTCGTGCGAG +
Preference number: 4 (lower is better)
Translates to: ECSGRGCTPSAGCSTGCDTQQLL*HSESCE
Trigger: CTCGCACGACTCAGAGTGCCAGAGCAGCTGCTGCGT...GTCACAGCCAGTGCTGCATCCAGCTGAGGGAGTACAGCCCCTTCCGCTGCATTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR CCA 90 bp GCACTGGCTGTGACACTCCTGATGGCTGCTGCAGAAGTCGCCGTTGGGCTTGCGTGCAGGAAGACGCTTTaGGGCGTGCACAACTCCTGC +
Preference number: 4 (lower is better)
Translates to: ALAVTLLMAAAEVAVGLACRKTL*GVHNSC
Trigger: GCAGGAGTTGTGCACGCCCCAAAGCGTCTTCCTGCA...CGCAAGCCCAACGGCGACTTCTGCAGCAGCCATCAGGAGTGTCACAGCCAGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR CCA 90 bp GGCCAGGCTGTTGATGGTACAGCAGTTGCTCTGGCACTCCTCGTGTCTCCTGCAAGACTGCCGTGGTTCTaGCAGGTCAGTGCTGGGGGC +
Preference number: 4 (lower is better)
Translates to: GQAVDGTAVALALLVSPARLPWF*QVSAGG
Trigger: GCCCCCAGCACTGACCTGCCAGAACCACGGCAGTCT...TGCAGGAGACACGAGGAGTGCCAGAGCAACTGCTGTACCATCAACAGCCTGGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000545517.2
CDS-3UTR CCA 90 bp CAGGGCAGGCACTGCAGGAAGATGGTCTTAGGGGTGCAGAGCGTGTGTGGGGCCAAACCCAGACTGCCGTaGTTCTGGCAGGTCAGTGCT +
Preference number: 4 (lower is better)
Translates to: QGRHCRKMVLGVQSVCGAKPRLP*FWQVSA
Trigger: AGCACTGACCTGCCAGAACCACGGCAGTCTGGGTTT...GGCCCCACACACGCTCTGCACCCCTAAGACCATCTTCCTGCAGTGCCTGCCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000545517.2
CDS-3UTR CCA 90 bp GATGCAGCACTGGCTGTGACACTCCTGATGGCTGCTGCAGAAGTCGCCGTTGGGTCGCTCACCTGTTCCTaGGCAGGGCCTGCAGACTCA +
Preference number: 4 (lower is better)
Translates to: DAALAVTLLMAAAEVAVGSLTCS*AGPADS
Trigger: TGAGTCTGCAGGCCCTGCCCAGGAACAGGTGAGCGA...CCCAACGGCGACTTCTGCAGCAGCCATCAGGAGTGTCACAGCCAGTGCTGCATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR CCA 90 bp GCACTGGCTGTGACACTCCTGATGGCTGCTGCAGAAGTCGCCGTTGGGCTTGCGCTCGTGTCTCCTGCATaGCTCCCCGATGCCCTGAAA +
Preference number: 4 (lower is better)
Translates to: ALAVTLLMAAAEVAVGLALVSPA*LPDALK
Trigger: TTTCAGGGCATCGGGGAGCCATGCAGGAGACACGAG...CGCAAGCCCAACGGCGACTTCTGCAGCAGCCATCAGGAGTGTCACAGCCAGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
3UTR CAA 72 bp AGCGTGTGTGGGGCCAGGCTGTTGATGGTACAGCAGTaGCTCTGGCACTCCTCGTGTCTCCTGCATGGCTCC +
Preference number: 4 (lower is better)
Translates to: SVCGARLLMVQQ*LWHSSCLLHGS
Trigger: GGAGCCATGCAGGAGACACGAGGAGTGCCAGAGCAACTGCTGTACCATCAACAGCCTGGCCCCACACACGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR GCA 90 bp GGTCCGGGGAATGCAGCGGAAGGGGCTGTACTCCCTCAGCTGGATGCAGCACTGTGGCACTCTGAGTCGTaGGAGCATCTGTACCCATTG +
Preference number: 4 (lower is better)
Translates to: GPGNAAEGAVLPQLDAALWHSES*EHLYPL
Trigger: CAATGGGTACAGATGCTCGCACGACTCAGAGTGCCA...CAGTGCTGCATCCAGCTGAGGGAGTACAGCCCCTTCCGCTGCATTCCCCGGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR GCA 90 bp TTCTCACAGACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGGGCGTGCACAACTCCTaGGGGCTGTTGTTGCGGACG +
Preference number: 4 (lower is better)
Translates to: FSQTLRATRLVTAFQFPQGVHNS*GLLLRT
Trigger: CGTCCGCAACAACAGCCCGCAGGAGTTGTGCACGCC...CTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGTCTGTGAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR GCA 90 bp GGCCAGGCTGTTGATGGTACAGCAGTTGCTCTGGCACTCCTCGTGTCTCCTGCAAGACGCTTTGGGGCGTaGACAACTCCTGCGGGCTGT +
Preference number: 4 (lower is better)
Translates to: GQAVDGTAVALALLVSPARRFGA*TTPAGC
Trigger: ACAGCCCGCAGGAGTTGTGCACGCCCCAAAGCGTCT...TGCAGGAGACACGAGGAGTGCCAGAGCAACTGCTGTACCATCAACAGCCTGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR GCA 90 bp GCCCCAGAAACAGCAGCACAAACCGTAAGGGAAGCTTCCGCTGGAACCAGCCCCACTCCTGATGGCTGCTaGAGAAGTCGCCGTTGGGCT +
Preference number: 4 (lower is better)
Translates to: APETAAQTVREASAGTSPTPDGC*RSRRWA
Trigger: AGCCCAACGGCGACTTCTGCAGCAGCCATCAGGAGT...GGGGCTGGTTCCAGCGGAAGCTTCCCTTACGGTTTGTGCTGCTGTTTCTGGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR GCA 90 bp CAGGGCAGGCACTGCAGGAAGATGGTCTTAGGGGTGCAGAGCGTGTGTGGGGCCCAGGCTACACCCCAGTaGCTGGGATTTGTTCTCACA +
Preference number: 4 (lower is better)
Translates to: QGRHCRKMVLGVQSVCGAQATPQ*LGFVLT
Trigger: TGTGAGAACAAATCCCAGGCACTGGGGTGTAGCCTG...GGCCCCACACACGCTCTGCACCCCTAAGACCATCTTCCTGCAGTGCCTGCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000622710.4
CDS-3UTR GCA 90 bp GGTACAGCAGTTGCTCTGGCACTCCTCGTGTCTCCTGCATGGCTCCCCGATGCCCGGTCCCGGTCCAGTTaGTGTGTTTCTGTGCGACTT +
Preference number: 4 (lower is better)
Translates to: GTAVALALLVSPAWLPDARSRSS*CVSVRL
Trigger: AAGTCGCACAGAAACACAGCAACTGGACCGGGACCG...GGCATCGGGGAGCCATGCAGGAGACACGAGGAGTGCCAGAGCAACTGCTGTACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000545517.2
CDS-3UTR CCA 90 bp AACCGTAAGGGAAGCTTCCGCTGGAACCAGCCCCCGCGCAACGCGGTCCTGCGTTCCCCGATGCCCTTATaGGACAGGTTCAACTTCTTC +
Preference number: 4 (lower is better)
Translates to: NRKGSFRWNQPPRNAVLRSPMPL*DRFNFF
Trigger: GAAGAAGTTGAACCTGTCCCATAAGGGCATCGGGGA...ACGCAGGACCGCGTTGCGCGGGGGCTGGTTCCAGCGGAAGCTTCCCTTACGGTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000376608.9
ENST00000544018.6
CDS-3UTR CCA 90 bp GCAGCACAAACCGTAAGGGAAGCTTCCGCTGGAACCAGCCCCCGCGCAACGCGGTCCCCGATGCCCTTATaGGACAGGTTCAACTTCTTC +
Preference number: 4 (lower is better)
Translates to: AAQTVREASAGTSPRATRSPMPL*DRFNFF
Trigger: GAAGAAGTTGAACCTGTCCCATAAGGGCATCGGGGA...CCGCGTTGCGCGGGGGCTGGTTCCAGCGGAAGCTTCCCTTACGGTTTGTGCTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000376608.9
ENST00000544018.6
CDS-3UTR CCA 90 bp GTGCAGAGCGTGTGTGGGGCCAGGCTGTTGATGGTACAGCAGTTGCTCTGGCACGGGGCCCGGGGCTTATaGGACAGGTTCAACTTCTTC +
Preference number: 4 (lower is better)
Translates to: VQSVCGARLLMVQQLLWHGARGL*DRFNFF
Trigger: GAAGAAGTTGAACCTGTCCCATAAGCCCCGGGCCCC...GTGCCAGAGCAACTGCTGTACCATCAACAGCCTGGCCCCACACACGCTCTGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000545517.2
CDS-3UTR CCA 90 bp CGAGCATCTGTACCCATTGGGCTTCCTCCAGGGCAGGCACTGCAGGAAGATGGTTCGCTCACCTGTTCCTaGGCAGGGCCTGCAGACTCA +
Preference number: 4 (lower is better)
Translates to: RASVPIGLPPGQALQEDGSLTCS*AGPADS
Trigger: TGAGTCTGCAGGCCCTGCCCAGGAACAGGTGAGCGA...ACCATCTTCCTGCAGTGCCTGCCCTGGAGGAAGCCCAATGGGTACAGATGCTCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000622710.4
CDS-3UTR GCA 90 bp GACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGATTTTCAGCTGTGGCCCATACCCTaGCATGGACCCCAGCAGCAG +
Preference number: 4 (lower is better)
Translates to: DTSRHQAGHSLSVPTDFQLWPIP*HGPQQQ
Trigger: CTGCTGCTGGGGTCCATGGCAGGGTATGGGCCACAG...CTGAAAATCTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR GCA 90 bp TGCGGACGCAGCAGCTGCTCTGGCACTCTGAGTCGTGCGAGCATCTGTACCCATGGAACAAACCCAGACTaGCGTGGTTCTGGCAGGTCA +
Preference number: 4 (lower is better)
Translates to: CGRSSCSGTLSRASICTHGTNPD*RGSGRS
Trigger: TGACCTGCCAGAACCACGGCAGTCTGGGTTTGTTCC...ATGGGTACAGATGCTCGCACGACTCAGAGTGCCAGAGCAGCTGCTGCGTCCGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545517.2
CDS-3UTR CCA 90 bp TTCTCACAGACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGCTCAGTGTAGGCGTCTaGACAGGGGCCAGTCCCACA +
Preference number: 4 (lower is better)
Translates to: FSQTLRATRLVTAFQFPQLSVGV*TGASPT
Trigger: TGTGGGACTGGCCCCTGTCCAGACGCCTACACTGAG...CTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGTCTGTGAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000376608.9
CDS-3UTR CCA 90 bp CTCACAGACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGATCGGCCATCGGGTGTGTaGACCTTTTTCCGTCAGGCG +
Preference number: 4 (lower is better)
Translates to: LTDTSRHQAGHSLSVPTDRPSGV*TFFRQA
Trigger: CGCCTGACGGAAAAAGGTCCACACACCCGATGGCCG...ATCTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGTCTGTGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CCA 90 bp TTGTTCTCACAGACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCAGCCCATACCCTGCCATaGACCCCAGCAGCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: LFSQTLRATRLVTAFQFPAHTLP*TPAAAA
Trigger: TGCTGCTGCTGCTGGGGTCCATGGCAGGGTATGGGC...TGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGTCTGTGAGAACAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CCA 90 bp TCACAGACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGATTGCCCATACCCTGCCATaGACCCCAGCAGCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: SQTLRATRLVTAFQFPQIAHTLP*TPAAAA
Trigger: TGCTGCTGCTGCTGGGGTCCATGGCAGGGTATGGGC...AATCTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGTCTGTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CCA 90 bp GTCCGGGGAATGCAGCGGAAGGGGCTGTACTCCCTCAGCTGGATGCAGCACTGGGTTCAACTTCTTCTGTaGCCCATACCCTGCCATGGA +
Preference number: 4 (lower is better)
Translates to: VRGMQRKGLYSLSWMQHWVQLLL*PIPCHG
Trigger: TCCATGGCAGGGTATGGGCCACAGAAGAAGTTGAAC...CCAGTGCTGCATCCAGCTGAGGGAGTACAGCCCCTTCCGCTGCATTCCCCGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR CCA 90 bp CAGGGCAGGCACTGCAGGAAGATGGTCTTAGGGGTGCAGAGCGTGTGTGGGGCCGTTCAACTTCTTCTGTaGCCCATACCCTGCCATGGA +
Preference number: 4 (lower is better)
Translates to: QGRHCRKMVLGVQSVCGAVQLLL*PIPCHG
Trigger: TCCATGGCAGGGTATGGGCCACAGAAGAAGTTGAAC...GGCCCCACACACGCTCTGCACCCCTAAGACCATCTTCCTGCAGTGCCTGCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR CCA 90 bp AGAGCCCCAGAAACAGCAGCACAAACCGTAAGGGAAGCTTCCGCTGGAACCAGCACGCAGCAGCTGCTCTaGCACTCTGAGTCGTGCGAG +
Preference number: 4 (lower is better)
Translates to: RAPETAAQTVREASAGTSTQQLL*HSESCE
Trigger: CTCGCACGACTCAGAGTGCCAGAGCAGCTGCTGCGT...GCTGGTTCCAGCGGAAGCTTCCCTTACGGTTTGTGCTGCTGTTTCTGGGGCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CCA 90 bp TCACAGACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGATTAAGGGAAGCTTCCGCTaGAACCAGCCCCCGCGCAAC +
Preference number: 4 (lower is better)
Translates to: SQTLRATRLVTAFQFPQIKGSFR*NQPPRN
Trigger: GTTGCGCGGGGGCTGGTTCCAGCGGAAGCTTCCCTT...AATCTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGTCTGTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CCA 90 bp GCCGGTCCCTCGCGCCCAGGTTCGAGCTCACATCACAGGGGCAGGCACTGGGCCCTGAGAAGTTTCTTATaGGACAGGTTCAACTTCTTC +
Preference number: 4 (lower is better)
Translates to: AGPSRPGSSSHHRGRHWALRSFL*DRFNFF
Trigger: GAAGAAGTTGAACCTGTCCCATAAGAAACTTCTCAG...GGCCCAGTGCCTGCCCCTGTGATGTGAGCTCGAACCTGGGCGCGAGGGACCGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000622710.4
CDS-3UTR TCA 90 bp CGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGATTTTCAGAGCCCCAGAGCTGCTCTGGCACTCTaGGTCGTGCGAGCATCTGTA +
Preference number: 4 (lower is better)
Translates to: RHQAGHSLSVPTDFQSPRAALAL*VVRASV
Trigger: TACAGATGCTCGCACGACTCAGAGTGCCAGAGCAGC...TCTGGGGCTCTGAAAATCTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR TCA 90 bp AGAGCCCCAGAAACAGCAGCACAAACCGTAAGGGAAGCTTCCGCTGGAACCAGCGCTGCTCTGGCACTCTaGGTCGTGCGAGCATCTGTA +
Preference number: 4 (lower is better)
Translates to: RAPETAAQTVREASAGTSAALAL*VVRASV
Trigger: TACAGATGCTCGCACGACTCAGAGTGCCAGAGCAGC...GCTGGTTCCAGCGGAAGCTTCCCTTACGGTTTGTGCTGCTGTTTCTGGGGCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR GCA 90 bp CGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGATTTTCAGAGCCCCAGACTCCAGGGCAGGCACTaGAGGAAGATGGTCTTAGGG +
Preference number: 4 (lower is better)
Translates to: RHQAGHSLSVPTDFQSPRLQGRH*RKMVLG
Trigger: CCCTAAGACCATCTTCCTGCAGTGCCTGCCCTGGAG...TCTGGGGCTCTGAAAATCTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR GCA 90 bp GCTGTTGATGGTACAGCAGTTGCTCTGGCACTCCTCGTGTCTCCTGCATGGCTCACTCCTGATGGCTGCTaGAGAAGTCGCCGTTGGGCT +
Preference number: 4 (lower is better)
Translates to: AVDGTAVALALLVSPAWLTPDGC*RSRRWA
Trigger: AGCCCAACGGCGACTTCTGCAGCAGCCATCAGGAGT...GAGCCATGCAGGAGACACGAGGAGTGCCAGAGCAACTGCTGTACCATCAACAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR GCA 90 bp TTCTCACAGACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGGACACTCCTGATGGCTaGTGCAGAAGTCGCCGTTGG +
Preference number: 4 (lower is better)
Translates to: FSQTLRATRLVTAFQFPQDTPDG*CRSRRW
Trigger: CCAACGGCGACTTCTGCAGCAGCCATCAGGAGTGTC...CTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGTCTGTGAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR GCA 90 bp AGCATCTGTACCCATTGGGCTTCCTCCAGGGCAGGCACTGCAGGAAGATGGTCTGACACTCCTGATGGCTaGTGCAGAAGTCGCCGTTGG +
Preference number: 4 (lower is better)
Translates to: SICTHWASSRAGTAGRWSDTPDG*CRSRRW
Trigger: CCAACGGCGACTTCTGCAGCAGCCATCAGGAGTGTC...AGACCATCTTCCTGCAGTGCCTGCCCTGGAGGAAGCCCAATGGGTACAGATGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000622710.4
CDS-3UTR CCA 90 bp ACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGATTTTCAGAGCGGTGCAGAGCGTGTGTaGGGCCAGGCTGTTGATGGT +
Preference number: 4 (lower is better)
Translates to: TSRHQAGHSLSVPTDFQSGAERV*GQAVDG
Trigger: ACCATCAACAGCCTGGCCCCACACACGCTCTGCACC...GCTCTGAAAATCTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CCA 90 bp GTTCTCACAGACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACATGCAGGAAGACGCTTTaGGGCGTGCACAACTCCTGC +
Preference number: 4 (lower is better)
Translates to: VLTDTSRHQAGHSLSVPTCRKTL*GVHNSC
Trigger: GCAGGAGTTGTGCACGCCCCAAAGCGTCTTCCTGCA...TGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGTCTGTGAGAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CCA 90 bp AGAGCCCCAGAAACAGCAGCACAAACCGTAAGGGAAGCTTCCGCTGGAACCAGCTTCGCGCCACCAGGCTaGTCACAGCCTTTCAGTTCC +
Preference number: 4 (lower is better)
Translates to: RAPETAAQTVREASAGTSFAPPG*SQPFSS
Trigger: GGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAA...GCTGGTTCCAGCGGAAGCTTCCCTTACGGTTTGTGCTGCTGTTTCTGGGGCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CCA 90 bp AGCATCTGTACCCATTGGGCTTCCTCCAGGGCAGGCACTGCAGGAAGATGGTCTTTCGCGCCACCAGGCTaGTCACAGCCTTTCAGTTCC +
Preference number: 4 (lower is better)
Translates to: SICTHWASSRAGTAGRWSFAPPG*SQPFSS
Trigger: GGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAA...AGACCATCTTCCTGCAGTGCCTGCCCTGGAGGAAGCCCAATGGGTACAGATGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000622710.4
CDS-3UTR CCA 90 bp GGTACAGCAGTTGCTCTGGCACTCCTCGTGTCTCCTGCATGGCTCCCCGATGCCCTACACCCCAGTGCCTaGGATTTGTTCTCACAGACA +
Preference number: 4 (lower is better)
Translates to: GTAVALALLVSPAWLPDALHPSA*DLFSQT
Trigger: TGTCTGTGAGAACAAATCCCAGGCACTGGGGTGTAG...GGCATCGGGGAGCCATGCAGGAGACACGAGGAGTGCCAGAGCAACTGCTGTACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000622710.4
CDS-3UTR TCA 90 bp TTGTTCTCACAGACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCAGCTCATCTCCCCACATaGGAGGCTCAGTGTAGGCGT +
Preference number: 4 (lower is better)
Translates to: LFSQTLRATRLVTAFQFPAHLPT*EAQCRR
Trigger: ACGCCTACACTGAGCCTCTCATGTGGGGAGATGAGC...TGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGTCTGTGAGAACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000376608.9
CDS-3UTR GCA 90 bp AGACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGATTTTCAACTCCTCGTGTCTCCTaGATGGCTCCCCGATGCCCT +
Preference number: 4 (lower is better)
Translates to: RHFAPPGWSQPFSSHRFSTPRVS*MAPRCP
Trigger: AGGGCATCGGGGAGCCATGCAGGAGACACGAGGAGT...TGAAAATCTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR GCA 90 bp AGACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGATTTTCAAGACGCTTTGGGGCGTaGACAACTCCTGCGGGCTGT +
Preference number: 4 (lower is better)
Translates to: RHFAPPGWSQPFSSHRFSRRFGA*TTPAGC
Trigger: ACAGCCCGCAGGAGTTGTGCACGCCCCAAAGCGTCT...TGAAAATCTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CCA 90 bp TTGTTCTCACAGACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACTCGTGTCTCCTGCATaGCTCCCCGATGCCCTTATG +
Preference number: 4 (lower is better)
Translates to: LFSQTLRATRLVTAFQFPLVSPA*LPDALM
Trigger: CATAAGGGCATCGGGGAGCCATGCAGGAGACACGAG...TGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGTCTGTGAGAACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000376608.9
ENST00000544018.6
CDS-3UTR CCA 90 bp GATGCCCTGAAACACCACTCACCAGCTCGCTCACCTGTTCCTGGGCAGGGCCTGTTCCTGAGAAGTTTCTaGAACAAACCCAGACTGCCG +
Preference number: 4 (lower is better)
Translates to: DALKHHSPARSPVPGQGLFLRSF*NKPRLP
Trigger: CGGCAGTCTGGGTTTGTTCCAGAAACTTCTCAGGAA...CAGGCCCTGCCCAGGAACAGGTGAGCGAGCTGGTGAGTGGTGTTTCAGGGCATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545517.2
CDS-3UTR TCA 90 bp GGTCCGGGGAATGCAGCGGAAGGGGCTGTACTCCCTCAGCTGGATGCAGCACTGCAAACTTGGGTTTCCTaGGAAGTTTCTTATGGGACA +
Preference number: 4 (lower is better)
Translates to: GPGNAAEGAVLPQLDAALQTWVS*EVSYGT
Trigger: TGTCCCATAAGAAACTTCTCAGGAAACCCAAGTTTG...CAGTGCTGCATCCAGCTGAGGGAGTACAGCCCCTTCCGCTGCATTCCCCGGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000622710.4
CDS-3UTR GCA 90 bp CGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGATTTTCAGAGCCCCAGATGGCACTCTGAGTCGTaGGAGCATCTGTACCCATTG +
Preference number: 4 (lower is better)
Translates to: RHQAGHSLSVPTDFQSPRWHSES*EHLYPL
Trigger: CAATGGGTACAGATGCTCGCACGACTCAGAGTGCCA...TCTGGGGCTCTGAAAATCTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR GCA 90 bp TGTTCTCACAGACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACCAGGCTACACCCCAGTaGCTGGGATTTGTTCTCACA +
Preference number: 4 (lower is better)
Translates to: CSHRHFAPPGWSQPFSSHQATPQ*LGFVLT
Trigger: TGTGAGAACAAATCCCAGGCACTGGGGTGTAGCCTG...GTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGTCTGTGAGAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR GCA 90 bp AGACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGATTTTCATGCATGGCTCCCCGATaGCCTGAAACACCACTCACC +
Preference number: 4 (lower is better)
Translates to: RHFAPPGWSQPFSSHRFSCMAPR*PETPLT
Trigger: GGTGAGTGGTGTTTCAGGGCATCGGGGAGCCATGCA...TGAAAATCTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000622710.4
CDS-3UTR CCA 90 bp GGCCAGGAGCCTTTATTGATGTTTAACAATCAGGCTACACCCCAGTGCCTGGGAGGTGCAGAGCGTGTGTaGGGCCAGGCTGTTGATGGT +
Preference number: 4 (lower is better)
Translates to: GQEPLLMFNNQATPQCLGGAERV*GQAVDG
Trigger: ACCATCAACAGCCTGGCCCCACACACGCTCTGCACC...TCCCAGGCACTGGGGTGTAGCCTGATTGTTAAACATCAATAAAGGCTCCTGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000376608.9
ENST00000544018.6
CDS-3UTR GCA 90 bp CACAGACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGATTTTGGCACTCTGAGTCGTaGGAGCATCTGTACCCATTG +
Preference number: 4 (lower is better)
Translates to: HRHFAPPGWSQPFSSHRFWHSES*EHLYPL
Trigger: CAATGGGTACAGATGCTCGCACGACTCAGAGTGCCA...AAATCTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGTCTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR GCA 90 bp TTGTTCTCACAGACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGGCTACACCCCAGTaGCTGGGATTTGTTCTCACA +
Preference number: 4 (lower is better)
Translates to: LFSQTLRATRLVTAFQFPQATPQ*LGFVLT
Trigger: TGTGAGAACAAATCCCAGGCACTGGGGTGTAGCCTG...TGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGTCTGTGAGAACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CCA 90 bp CTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGATTTTCAGAGCCGTTCAACTTCTTCTGTaGCCCATACCCTGCCATGGA +
Preference number: 4 (lower is better)
Translates to: LRATRLVTAFQFPQIFRAVQLLL*PIPCHG
Trigger: TCCATGGCAGGGTATGGGCCACAGAAGAAGTTGAAC...GGCTCTGAAAATCTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
3UTR CAA 72 bp TGTTTAACAATCAGGCTACACCCCAGTGCCTGGGATTaGTTCTCACAGACACTTCGCGCCACCAGGCTGGTC +
Preference number: 4 (lower is better)
Translates to: CLTIRLHPSAWD*FSQTLRATRLV
Trigger: GACCAGCCTGGTGGCGCGAAGTGTCTGTGAGAACAAATCCCAGGCACTGGGGTGTAGCCTGATTGTTAAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR GCA 90 bp CAGGAGCCTTTATTGATGTTTAACAATCAGGCTACACCCCAGTGCCTGGGATTTCGCCAGGGCACACACTaGAGGAAGACGCTTTGGGGC +
Preference number: 4 (lower is better)
Translates to: QEPLLMFNNQATPQCLGFRQGTH*RKTLWG
Trigger: GCCCCAAAGCGTCTTCCTGCAGTGTGTGCCCTGGCG...AAATCCCAGGCACTGGGGTGTAGCCTGATTGTTAAACATCAATAAAGGCTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000376608.9
ENST00000544018.6
CDS-3UTR CCA 90 bp ACAATCAGGCTACACCCCAGTGCCTGGGATTTGTTCTCACAGACACTTCGCGCCCTACACCCCAGTGCCTaGGATTTGTTCTCACAGACA +
Preference number: 4 (lower is better)
Translates to: TIRLHPSAWDLFSQTLRALHPSA*DLFSQT
Trigger: TGTCTGTGAGAACAAATCCCAGGCACTGGGGTGTAG...GGCGCGAAGTGTCTGTGAGAACAAATCCCAGGCACTGGGGTGTAGCCTGATTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CCA 90 bp GGCCAGGAGCCTTTATTGATGTTTAACAATCAGGCTACACCCCAGTGCCTGGGACTACACCCCAGTGCCTaGGATTTGTTCTCACAGACA +
Preference number: 4 (lower is better)
Translates to: GQEPLLMFNNQATPQCLGLHPSA*DLFSQT
Trigger: TGTCTGTGAGAACAAATCCCAGGCACTGGGGTGTAG...TCCCAGGCACTGGGGTGTAGCCTGATTGTTAAACATCAATAAAGGCTCCTGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000376608.9
ENST00000544018.6
CDS-3UTR GCA 90 bp TTATTGATGTTTAACAATCAGGCTACACCCCAGTGCCTGGGATTTGTTCTCACAACTCCTGATGGCTGCTaGAGAAGTCGCCGTTGGGCT +
Preference number: 4 (lower is better)
Translates to: LLMFNNQATPQCLGFVLTTPDGC*RSRRWA
Trigger: AGCCCAACGGCGACTTCTGCAGCAGCCATCAGGAGT...TGTGAGAACAAATCCCAGGCACTGGGGTGTAGCCTGATTGTTAAACATCAATAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CAA 90 bp AGCCCCCGCGCAACGCGGTCCTGCGTGAACATCCCAGGGCCCAGGCCGGTCCCTTCCTGCGGGCTGTTGTaGCGGACGCAGCAGCTGCTC +
Preference number: 5 (lower is better)
Translates to: SPRATRSCVNIPGPRPVPSCGLL*RTQQLL
Trigger: GAGCAGCTGCTGCGTCCGCAACAACAGCCCGCAGGA...AGGGACCGGCCTGGGCCCTGGGATGTTCACGCAGGACCGCGTTGCGCGGGGGCT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CAA 90 bp TCCGCTGGAACCAGCCCCCGCGCAACGCGGTCCTGCGTGAACATCCCAGGGCCCAAGTCGCCGTTGGGCTaGCGCCAGGGCACACACTGC +
Preference number: 5 (lower is better)
Translates to: SAGTSPRATRSCVNIPGPKSPLG*RQGTHC
Trigger: GCAGTGTGTGCCCTGGCGCAAGCCCAACGGCGACTT...GGGCCCTGGGATGTTCACGCAGGACCGCGTTGCGCGGGGGCTGGTTCCAGCGGA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CAA 90 bp CGCAACGCGGTCCTGCGTGAACATCCCAGGGCCCAGGCCGGTCCCTCGCGCCCACTGCAGGAAGACGCTTaGGGGCGTGCACAACTCCTG +
Preference number: 5 (lower is better)
Translates to: RNAVLREHPRAQAGPSRPLQEDA*GRAQLL
Trigger: CAGGAGTTGTGCACGCCCCAAAGCGTCTTCCTGCAG...TGGGCGCGAGGGACCGGCCTGGGCCCTGGGATGTTCACGCAGGACCGCGTTGCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CAA 90 bp AACCGTAAGGGAAGCTTCCGCTGGAACCAGCCCCCGCGCAACGCGGTCCTGCGTCTGCAGAAGTCGCCGTaGGGCTTGCGCCAGGGCACA +
Preference number: 5 (lower is better)
Translates to: NRKGSFRWNQPPRNAVLRLQKSP*GLRQGT
Trigger: TGTGCCCTGGCGCAAGCCCAACGGCGACTTCTGCAG...ACGCAGGACCGCGTTGCGCGGGGGCTGGTTCCAGCGGAAGCTTCCCTTACGGTT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CAA 90 bp ACCGTAAGGGAAGCTTCCGCTGGAACCAGCCCCCGCGCAACGCGGTCCTGCGTGGAGCATCTGTACCCATaGGGCTTCCTCCAGGGCAGG +
Preference number: 5 (lower is better)
Translates to: TVREASAGTSPRATRSCVEHLYP*GFLQGR
Trigger: CCTGCCCTGGAGGAAGCCCAATGGGTACAGATGCTC...CACGCAGGACCGCGTTGCGCGGGGGCTGGTTCCAGCGGAAGCTTCCCTTACGGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000376608.9
ENST00000622710.4
CDS-3UTR CAA 90 bp AGCACAAACCGTAAGGGAAGCTTCCGCTGGAACCAGCCCCCGCGCAACGCGGTCAAGTCGCCGTTGGGCTaGCGCCAGGGCACACACTGC +
Preference number: 5 (lower is better)
Translates to: STNRKGSFRWNQPPRNAVKSPLG*RQGTHC
Trigger: GCAGTGTGTGCCCTGGCGCAAGCCCAACGGCGACTT...GACCGCGTTGCGCGGGGGCTGGTTCCAGCGGAAGCTTCCCTTACGGTTTGTGCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CAA 90 bp TCCGCTGGAACCAGCCCCCGCGCAACGCGGTCCTGCGTGAACATCCCAGGGCCCCCCAGTGCCTGGGATTaGTTCTCACAGACACTTCGC +
Preference number: 5 (lower is better)
Translates to: SAGTSPRATRSCVNIPGPPSAWD*FSQTLR
Trigger: GCGAAGTGTCTGTGAGAACAAATCCCAGGCACTGGG...GGGCCCTGGGATGTTCACGCAGGACCGCGTTGCGCGGGGGCTGGTTCCAGCGGA
66% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS GCA 90 bp AGTGTGCTTGGGCAGCACAGCCGGGCGTGTGGCCAGGAGAGCGAGTaGAGCCTCAGGGAGGGTTTCATCCAGGAAGGCGCTTTGTGTCCC +
Preference number: 5 (lower is better)
Translates to: SVLGQHSRACGQESE*SLREGFIQEGALCP
Trigger: GGGACACAAAGCGCCTTCCTGGATGAAACCCTCCCTGAGGCTGCACTCGCTCTCCTGGCCACACGCCCGGCTGTGCTGCCCAAGCACACT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000536100.1
CDS CCA 90 bp CCGTCCCATAGCCTCAAGTGTGCTTGGGCAGCACAGCCGGGCGTGTaGCCAGGAGAGCGAGTGCAGCCTCAGGGAGGGTTTCATCCAGGA +
Preference number: 5 (lower is better)
Translates to: PSHSLKCAWAAQPGV*PGERVQPQGGFHPG
Trigger: TCCTGGATGAAACCCTCCCTGAGGCTGCACTCGCTCTCCTGGCCACACGCCCGGCTGTGCTGCCCAAGCACACTTGAGGCTATGGGACGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000536100.1
CDS-3UTR CAA 90 bp GGTCCGGGGAATGCAGCGGAAGGGGCTGTACTCCCTCAGCTGGATGCAGCACTGAACTCCTGCGGGCTGTaGTTGCGGACGCAGCAGCTG +
Preference number: 5 (lower is better)
Translates to: GPGNAAEGAVLPQLDAALNSCGL*LRTQQL
Trigger: CAGCTGCTGCGTCCGCAACAACAGCCCGCAGGAGTT...CAGTGCTGCATCCAGCTGAGGGAGTACAGCCCCTTCCGCTGCATTCCCCGGACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR CAA 90 bp GAAGCTTCCGCTGGAACCAGCCCCCGCGCAACGCGGTCCTGCGTGAACATCCCACTGCAGGAAGACGCTTaGGGGCGTGCACAACTCCTG +
Preference number: 5 (lower is better)
Translates to: EASAGTSPRATRSCVNIPLQEDA*GRAQLL
Trigger: CAGGAGTTGTGCACGCCCCAAAGCGTCTTCCTGCAG...TGGGATGTTCACGCAGGACCGCGTTGCGCGGGGGCTGGTTCCAGCGGAAGCTTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CAA 90 bp GCACTGGCTGTGACACTCCTGATGGCTGCTGCAGAAGTCGCCGTTGGGCTTGCGAAGTCGCCGTTGGGCTaGCGCCAGGGCACACACTGC +
Preference number: 5 (lower is better)
Translates to: ALAVTLLMAAAEVAVGLAKSPLG*RQGTHC
Trigger: GCAGTGTGTGCCCTGGCGCAAGCCCAACGGCGACTT...CGCAAGCCCAACGGCGACTTCTGCAGCAGCCATCAGGAGTGTCACAGCCAGTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS CCA 90 bp GGGGTGCCCGGCACCCACCTTATGGGACAGGTTCAACTTCTTCTGTaGCCCATACCCTGCCATGGACCCCAGCAGCAGCAGCAGCAGCAG +
Preference number: 5 (lower is better)
Translates to: GVPGTHLMGQVQLLL*PIPCHGPQQQQQQQ
Trigger: CTGCTGCTGCTGCTGCTGCTGGGGTCCATGGCAGGGTATGGGCCACAGAAGAAGTTGAACCTGTCCCATAAGGTGGGTGCCGGGCACCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000536100.1
CDS-3UTR CAA 90 bp AGCACAAACCGTAAGGGAAGCTTCCGCTGGAACCAGCCCCCGCGCAACGCGGTCGAGCATCTGTACCCATaGGGCTTCCTCCAGGGCAGG +
Preference number: 5 (lower is better)
Translates to: STNRKGSFRWNQPPRNAVEHLYP*GFLQGR
Trigger: CCTGCCCTGGAGGAAGCCCAATGGGTACAGATGCTC...GACCGCGTTGCGCGGGGGCTGGTTCCAGCGGAAGCTTCCCTTACGGTTTGTGCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000376608.9
ENST00000622710.4
CDS-3UTR CAA 90 bp TGCAGCACTGGCTGTGACACTCCTGATGGCTGCTGCAGAAGTCGCCGTTGGGCTAAGTCGCCGTTGGGCTaGCGCCAGGGCACACACTGC +
Preference number: 5 (lower is better)
Translates to: CSTGCDTPDGCCRSRRWAKSPLG*RQGTHC
Trigger: GCAGTGTGTGCCCTGGCGCAAGCCCAACGGCGACTT...AGCCCAACGGCGACTTCTGCAGCAGCCATCAGGAGTGTCACAGCCAGTGCTGCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR CAA 90 bp GCCCCAGAAACAGCAGCACAAACCGTAAGGGAAGCTTCCGCTGGAACCAGCCCCCTGCAGAAGTCGCCGTaGGGCTTGCGCCAGGGCACA +
Preference number: 5 (lower is better)
Translates to: APETAAQTVREASAGTSPLQKSP*GLRQGT
Trigger: TGTGCCCTGGCGCAAGCCCAACGGCGACTTCTGCAG...GGGGCTGGTTCCAGCGGAAGCTTCCCTTACGGTTTGTGCTGCTGTTTCTGGGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CAA 90 bp GCACACACTGCAGGAAGACGCTTTGGGGCGTGCACAACTCCTGCGGGCTGTTGTCTGCAGAAGTCGCCGTaGGGCTTGCGCCAGGGCACA +
Preference number: 5 (lower is better)
Translates to: AHTAGRRFGACTTPAGCCLQKSP*GLRQGT
Trigger: TGTGCCCTGGCGCAAGCCCAACGGCGACTTCTGCAG...ACAACAGCCCGCAGGAGTTGTGCACGCCCCAAAGCGTCTTCCTGCAGTGTGTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR CAA 90 bp ACTGGCTGTGACACTCCTGATGGCTGCTGCAGAAGTCGCCGTTGGGCTTGCGCCAGGCCTGCCCTCTCCTaGGCTCCCCTGTGTCACCAT +
Preference number: 5 (lower is better)
Translates to: TGCDTPDGCCRSRRWACARPALS*APLCHH
Trigger: ATGGTGACACAGGGGAGCCAAGGAGAGGGCAGGCCT...GGCGCAAGCCCAACGGCGACTTCTGCAGCAGCCATCAGGAGTGTCACAGCCAGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS TCA 90 bp AGGGTTTCATCCAGGAAGGCGCTTTGTGTCCCTTTGAGACCCTCCTaGCGGAAAGTGGCAGCCCTCGCGGGTGGGGACTGCAAGGGCCTC +
Preference number: 5 (lower is better)
Translates to: RVSSRKALCVPLRPS*RKVAALAGGDCKGL
Trigger: GAGGCCCTTGCAGTCCCCACCCGCGAGGGCTGCCACTTTCCGTCAGGAGGGTCTCAAAGGGACACAAAGCGCCTTCCTGGATGAAACCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000536100.1
CDS TCA 90 bp CAGCCTCAGGGAGGGTTTCATCCAGGAAGGCGCTTTGTGTCCCTTTaGGACCCTCCTGACGGAAAGTGGCAGCCCTCGCGGGTGGGGACT +
Preference number: 5 (lower is better)
Translates to: QPQGGFHPGRRFVSL*DPPDGKWQPSRVGT
Trigger: AGTCCCCACCCGCGAGGGCTGCCACTTTCCGTCAGGAGGGTCTCAAAGGGACACAAAGCGCCTTCCTGGATGAAACCCTCCCTGAGGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000536100.1
CDS-3UTR CAA 90 bp ACACTGCAGGAAGACGCTTTGGGGCGTGCACAACTCCTGCGGGCTGTTGTTGCGAACTCCTGCGGGCTGTaGTTGCGGACGCAGCAGCTG +
Preference number: 5 (lower is better)
Translates to: TLQEDALGRAQLLRAVVANSCGL*LRTQQL
Trigger: CAGCTGCTGCGTCCGCAACAACAGCCCGCAGGAGTT...CGCAACAACAGCCCGCAGGAGTTGTGCACGCCCCAAAGCGTCTTCCTGCAGTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR CAA 90 bp GCACTGGCTGTGACACTCCTGATGGCTGCTGCAGAAGTCGCCGTTGGGCTTGCGCTGCAGGAAGACGCTTaGGGGCGTGCACAACTCCTG +
Preference number: 5 (lower is better)
Translates to: ALAVTLLMAAAEVAVGLALQEDA*GRAQLL
Trigger: CAGGAGTTGTGCACGCCCCAAAGCGTCTTCCTGCAG...CGCAAGCCCAACGGCGACTTCTGCAGCAGCCATCAGGAGTGTCACAGCCAGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS GCA 90 bp CCTGTTCCTGGGCAGGGCCTGCAGACTCAGCACTCAGGAAAGGCCTaGCCTCTCCTTGGCTCCCCTGTGTCACCATCCTTCAAACTTGGG +
Preference number: 5 (lower is better)
Translates to: PVPGQGLQTQHSGKA*PLLGSPVSPSFKLG
Trigger: CCCAAGTTTGAAGGATGGTGACACAGGGGAGCCAAGGAGAGGGCAGGCCTTTCCTGAGTGCTGAGTCTGCAGGCCCTGCCCAGGAACAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000545517.2
ENST00000616042.1
ENST00000622710.4
CDS-3UTR CAA 90 bp AACCGTAAGGGAAGCTTCCGCTGGAACCAGCCCCCGCGCAACGCGGTCCTGCGTTTGATGGTACAGCAGTaGCTCTGGCACTCCTCGTGT +
Preference number: 5 (lower is better)
Translates to: NRKGSFRWNQPPRNAVLRLMVQQ*LWHSSC
Trigger: ACACGAGGAGTGCCAGAGCAACTGCTGTACCATCAA...ACGCAGGACCGCGTTGCGCGGGGGCTGGTTCCAGCGGAAGCTTCCCTTACGGTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CAA 90 bp GCTGTTGATGGTACAGCAGTTGCTCTGGCACTCCTCGTGTCTCCTGCATGGCTCTCCTGCGGGCTGTTGTaGCGGACGCAGCAGCTGCTC +
Preference number: 5 (lower is better)
Translates to: AVDGTAVALALLVSPAWLSCGLL*RTQQLL
Trigger: GAGCAGCTGCTGCGTCCGCAACAACAGCCCGCAGGA...GAGCCATGCAGGAGACACGAGGAGTGCCAGAGCAACTGCTGTACCATCAACAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR CAA 90 bp GTTCTCACAGACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACACTGCAGAAGTCGCCGTaGGGCTTGCGCCAGGGCACA +
Preference number: 5 (lower is better)
Translates to: VLTDTSRHQAGHSLSVPTLQKSP*GLRQGT
Trigger: TGTGCCCTGGCGCAAGCCCAACGGCGACTTCTGCAG...TGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGTCTGTGAGAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CAA 90 bp GCACACACTGCAGGAAGACGCTTTGGGGCGTGCACAACTCCTGCGGGCTGTTGTGCGGTCCCGGTCCAGTaGCTGTGTTTCTGTGCGACT +
Preference number: 5 (lower is better)
Translates to: AHTAGRRFGACTTPAGCCAVPVQ*LCFCAT
Trigger: AGTCGCACAGAAACACAGCAACTGGACCGGGACCGC...ACAACAGCCCGCAGGAGTTGTGCACGCCCCAAAGCGTCTTCCTGCAGTGTGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000545517.2
CDS TCA 90 bp TGTTCCCTCCTTCGGTCCCAGGAGAAAGACGCTCATCTCCCCACATaGGAGGCTCAGTGTAGGCGTCTGGACAGGGGCCAGTCCCACAAG +
Preference number: 5 (lower is better)
Translates to: CSLLRSQEKDAHLPT*EAQCRRLDRGQSHK
Trigger: CTTGTGGGACTGGCCCCTGTCCAGACGCCTACACTGAGCCTCTCATGTGGGGAGATGAGCGTCTTTCTCCTGGGACCGAAGGAGGGAACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000376608.9
CDS CCA 90 bp CCTTATGGGACAGGTTCAACTTCTTCTGTGGCCCATACCCTGCCATaGACCCCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCGTCC +
Preference number: 5 (lower is better)
Translates to: PYGTGSTSSVAHTLP*TPAAAAAAAVAAAS
Trigger: GGACGCTGCTGCTACTGCTGCTGCTGCTGCTGCTGCTGGGGTCCATGGCAGGGTATGGGCCACAGAAGAAGTTGAACCTGTCCCATAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000536100.1
ENST00000544018.6
CDS CCA 90 bp GCTTATGGGACAGGTTCAACTTCTTCTGTGGCCCATACCCTGCCATaGACCCCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCGTCC +
Preference number: 5 (lower is better)
Translates to: AYGTGSTSSVAHTLP*TPAAAAAAAVAAAS
Trigger: GGACGCTGCTGCTACTGCTGCTGCTGCTGCTGCTGCTGGGGTCCATGGCAGGGTATGGGCCACAGAAGAAGTTGAACCTGTCCCATAAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000616042.1
CDS-3UTR CAA 90 bp CAGGGCAGGCACTGCAGGAAGATGGTCTTAGGGGTGCAGAGCGTGTGTGGGGCCTTGATGGTACAGCAGTaGCTCTGGCACTCCTCGTGT +
Preference number: 5 (lower is better)
Translates to: QGRHCRKMVLGVQSVCGALMVQQ*LWHSSC
Trigger: ACACGAGGAGTGCCAGAGCAACTGCTGTACCATCAA...GGCCCCACACACGCTCTGCACCCCTAAGACCATCTTCCTGCAGTGCCTGCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR CAA 90 bp TCACAGACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGATTTCCTGCGGGCTGTTGTaGCGGACGCAGCAGCTGCTC +
Preference number: 5 (lower is better)
Translates to: SQTLRATRLVTAFQFPQISCGLL*RTQQLL
Trigger: GAGCAGCTGCTGCGTCCGCAACAACAGCCCGCAGGA...AATCTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGTCTGTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CAA 90 bp CTCACAGACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGATAGGCCTGCCCTCTCCTaGGCTCCCCTGTGTCACCAT +
Preference number: 5 (lower is better)
Translates to: LTDTSRHQAGHSLSVPTDRPALS*APLCHH
Trigger: ATGGTGACACAGGGGAGCCAAGGAGAGGGCAGGCCT...ATCTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGTCTGTGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000622710.4
CDS CCA 90 bp TCTTATGGGACAGGTTCAACTTCTTCTGTGGCCCATACCCTGCCATaGACCCCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCGTCC +
Preference number: 5 (lower is better)
Translates to: SYGTGSTSSVAHTLP*TPAAAAAAAVAAAS
Trigger: GGACGCTGCTGCTACTGCTGCTGCTGCTGCTGCTGCTGGGGTCCATGGCAGGGTATGGGCCACAGAAGAAGTTGAACCTGTCCCATAAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000622710.4
CDS-3UTR CAA 90 bp TCACAGACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGATTAACTCCTGCGGGCTGTaGTTGCGGACGCAGCAGCTG +
Preference number: 5 (lower is better)
Translates to: SQTLRATRLVTAFQFPQINSCGL*LRTQQL
Trigger: CAGCTGCTGCGTCCGCAACAACAGCCCGCAGGAGTT...AATCTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGTCTGTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CAA 90 bp GTTGATGGTACAGCAGTTGCTCTGGCACTCCTCGTGTCTCCTGCATGGCTCCCCGAGCATCTGTACCCATaGGGCTCACCTTCCTCCAGG +
Preference number: 5 (lower is better)
Translates to: VDGTAVALALLVSPAWLPEHLYP*GSPSSR
Trigger: CCTGGAGGAAGGTGAGCCCAATGGGTACAGATGCTC...GGGGAGCCATGCAGGAGACACGAGGAGTGCCAGAGCAACTGCTGTACCATCAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000545517.2
CDS-3UTR CAA 90 bp AGACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGATTTTCAAACTCCTGCGGGCTGTaGTTGCGGACGCAGCAGCTG +
Preference number: 5 (lower is better)
Translates to: RHFAPPGWSQPFSSHRFSNSCGL*LRTQQL
Trigger: CAGCTGCTGCGTCCGCAACAACAGCCCGCAGGAGTT...TGAAAATCTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CAA 90 bp TCACAGACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGATTCTGCAGGAAGACGCTTaGGGGCGTGCACAACTCCTG +
Preference number: 5 (lower is better)
Translates to: SQTLRATRLVTAFQFPQILQEDA*GRAQLL
Trigger: CAGGAGTTGTGCACGCCCCAAAGCGTCTTCCTGCAG...AATCTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGTCTGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CAA 90 bp TTAACAATCAGGCTACACCCCAGTGCCTGGGATTTGTTCTCACAGACACTTCGCTCCTGCGGGCTGTTGTaGCGGACGCAGCAGCTGCTC +
Preference number: 5 (lower is better)
Translates to: LTIRLHPSAWDLFSQTLRSCGLL*RTQQLL
Trigger: GAGCAGCTGCTGCGTCCGCAACAACAGCCCGCAGGA...GCGAAGTGTCTGTGAGAACAAATCCCAGGCACTGGGGTGTAGCCTGATTGTTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CAA 90 bp CACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGATTTTCAGAGGAGCATCTGTACCCATaGGGCTCACCTTCCTCCAGG +
Preference number: 5 (lower is better)
Translates to: HFAPPGWSQPFSSHRFSEEHLYP*GSPSSR
Trigger: CCTGGAGGAAGGTGAGCCCAATGGGTACAGATGCTC...CTCTGAAAATCTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000544018.6
CDS CCA 90 bp GGGTTTCCTGAGAAGTTTCTTATGGGACAGGTTCAACTTCTTCTGTaGCCCATACCCTGCCATGGACCCCAGCAGCAGCAGCAGCAGCAG +
Preference number: 5 (lower is better)
Translates to: GFPEKFLMGQVQLLL*PIPCHGPQQQQQQQ
Trigger: CTGCTGCTGCTGCTGCTGCTGGGGTCCATGGCAGGGTATGGGCCACAGAAGAAGTTGAACCTGTCCCATAAGAAACTTCTCAGGAAACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000622710.4
CDS-3UTR CAA 90 bp CTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGATTTTCAGAGCCTTGATGGTACAGCAGTaGCTCTGGCACTCCTCGTGT +
Preference number: 5 (lower is better)
Translates to: LRATRLVTAFQFPQIFRALMVQQ*LWHSSC
Trigger: ACACGAGGAGTGCCAGAGCAACTGCTGTACCATCAA...GGCTCTGAAAATCTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CAA 90 bp ACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGATTTTCAGATGTGGGGCCAGGCTGTaGATGGTACAGCAGTTGCTC +
Preference number: 5 (lower is better)
Translates to: TLRATRLVTAFQFPQIFRCGARL*MVQQLL
Trigger: GAGCAACTGCTGTACCATCAACAGCCTGGCCCCACA...TCTGAAAATCTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CAA 90 bp GACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGATTTTCAGCCCAGTGCCTGGGATTaGTTCTCACAGACACTTCGC +
Preference number: 5 (lower is better)
Translates to: DTSRHQAGHSLSVPTDFQPSAWD*FSQTLR
Trigger: GCGAAGTGTCTGTGAGAACAAATCCCAGGCACTGGG...CTGAAAATCTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS CCA 90 bp CCCCTGTGTCACCATCCTTCAAACTTGGGTTTCCTGAGAAGTTTCTaGAACAAACCCAGACTGCCGTGGTTCTGGCAGGTCAGTGCTGGG +
Preference number: 5 (lower is better)
Translates to: PLCHHPSNLGFLRSF*NKPRLPWFWQVSAG
Trigger: CCCAGCACTGACCTGCCAGAACCACGGCAGTCTGGGTTTGTTCCAGAAACTTCTCAGGAAACCCAAGTTTGAAGGATGGTGACACAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000616042.1
CDS-3UTR CAA 90 bp AGAAACAGCAGCACAAACCGTAAGGGAAGCTTCCGCTGGAACCAGCCCCCGCGCGGCCAGGAGCCTTTATaGATGTTTAACAATCAGGCT +
Preference number: 5 (lower is better)
Translates to: RNSSTNRKGSFRWNQPPRGQEPL*MFNNQA
Trigger: AGCCTGATTGTTAAACATCAATAAAGGCTCCTGGCC...GCGCGGGGGCTGGTTCCAGCGGAAGCTTCCCTTACGGTTTGTGCTGCTGTTTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000376608.9
ENST00000544018.6
CDS-3UTR CAA 90 bp GATGGTACAGCAGTTGCTCTGGCACTCCTCGTGTCTCCTGCATGGCTCCCCGATCACCATCCTTCAAACTaGGGTTTCCTGAGAAGTTTC +
Preference number: 5 (lower is better)
Translates to: DGTAVALALLVSPAWLPDHHPSN*GFLRSF
Trigger: GAAACTTCTCAGGAAACCCAAGTTTGAAGGATGGTG...ATCGGGGAGCCATGCAGGAGACACGAGGAGTGCCAGAGCAACTGCTGTACCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000622710.4
CDS-3UTR CAA 90 bp TTAACAATCAGGCTACACCCCAGTGCCTGGGATTTGTTCTCACAGACACTTCGCCCCAGTGCCTGGGATTaGTTCTCACAGACACTTCGC +
Preference number: 5 (lower is better)
Translates to: LTIRLHPSAWDLFSQTLRPSAWD*FSQTLR
Trigger: GCGAAGTGTCTGTGAGAACAAATCCCAGGCACTGGG...GCGAAGTGTCTGTGAGAACAAATCCCAGGCACTGGGGTGTAGCCTGATTGTTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CAA 90 bp CTCACAGACACTTCGCGCCACCAGGCTGGTCACAGCCTTTCAGTTCCCACAGATCACCATCCTTCAAACTaGGGTTTCCTGAGAAGTTTC +
Preference number: 5 (lower is better)
Translates to: LTDTSRHQAGHSLSVPTDHHPSN*GFLRSF
Trigger: GAAACTTCTCAGGAAACCCAAGTTTGAAGGATGGTG...ATCTGTGGGAACTGAAAGGCTGTGACCAGCCTGGTGGCGCGAAGTGTCTGTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000622710.4
CDS-3UTR CAA 90 bp TTATTGATGTTTAACAATCAGGCTACACCCCAGTGCCTGGGATTTGTTCTCACATTGATGGTACAGCAGTaGCTCTGGCACTCCTCGTGT +
Preference number: 5 (lower is better)
Translates to: LLMFNNQATPQCLGFVLTLMVQQ*LWHSSC
Trigger: ACACGAGGAGTGCCAGAGCAACTGCTGTACCATCAA...TGTGAGAACAAATCCCAGGCACTGGGGTGTAGCCTGATTGTTAAACATCAATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000376608.9
ENST00000544018.6
ENST00000622710.4
CDS-3UTR CAA 90 bp TTGATGTTTAACAATCAGGCTACACCCCAGTGCCTGGGATTTGTTCTCACAGACGGCCAGGAGCCTTTATaGATGTTTAACAATCAGGCT +
Preference number: 5 (lower is better)
Translates to: LMFNNQATPQCLGFVLTDGQEPL*MFNNQA
Trigger: AGCCTGATTGTTAAACATCAATAAAGGCTCCTGGCC...GTCTGTGAGAACAAATCCCAGGCACTGGGGTGTAGCCTGATTGTTAAACATCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000376608.9
ENST00000544018.6
CDS CCA 72 bp TGGTGCAGCTCCCATGTGGCCCCGCTCTCTCCTGCCTaGTTGACGGTGGCCGTGGTGGCCCCAGGGCTGCTC +
Preference number: 6 (lower is better)
Translates to: WCSSHVAPLSPA*LTVAVVAPGLL
Trigger: GAGCAGCCCTGGGGCCACCACGGCCACCGTCAACCAGGCAGGAGAGAGCGGGGCCACATGGGAGCTGCACCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000536100.1
CDS GCA 72 bp ACACTGGTGCAGCTCCCATGTGGCCCCGCTCTCTCCTaGCTGGTTGACGGTGGCCGTGGTGGCCCCAGGGCT +
Preference number: 6 (lower is better)
Translates to: TLVQLPCGPALS*LVDGGRGGPRA
Trigger: AGCCCTGGGGCCACCACGGCCACCGTCAACCAGGCAGGAGAGAGCGGGGCCACATGGGAGCTGCACCAGTGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000536100.1
CDS CAA 90 bp CAGTACGCTGGGCACAGTCGCAGCCCCGCCTCTTCCTTCTCCGTCTaGTTCCCTCCTTCGGTCCCAGGAGAAAGACGCTCATCTCCCCAC +
Preference number: 6 (lower is better)
Translates to: QYAGHSRSPASSFSV*FPPSVPGERRSSPH
Trigger: GTGGGGAGATGAGCGTCTTTCTCCTGGGACCGAAGGAGGGAACAAGACGGAGAAGGAAGAGGCGGGGCTGCGACTGTGCCCAGCGTACTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000376608.9
ENST00000616042.1
CDS CCA 72 bp GGCCCGGGGCTTATGGGACAGGTTCAACTTCTTCTGTaGCCCATACCCTGCCATGGACCCCAGCAGCAGCAG +
Preference number: 6 (lower is better)
Translates to: GPGLMGQVQLLL*PIPCHGPQQQQ
Trigger: CTGCTGCTGCTGGGGTCCATGGCAGGGTATGGGCCACAGAAGAAGTTGAACCTGTCCCATAAGCCCCGGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000616042.1
CDS CAA 90 bp GAGAGCGAGTGCAGCCTCAGGGAGGGTTTCATCCAGGAAGGCGCTTaGTGTCCCTTTGAGACCCTCCTGACGGAAAGTGGCAGCCCTCGC +
Preference number: 6 (lower is better)
Translates to: ESECSLREGFIQEGA*CPFETLLTESGSPR
Trigger: GCGAGGGCTGCCACTTTCCGTCAGGAGGGTCTCAAAGGGACACAAAGCGCCTTCCTGGATGAAACCCTCCCTGAGGCTGCACTCGCTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000536100.1
CDS TCA 72 bp GGAGGGTTTCATCCAGGAAGGCGCTTTGTGTCCCTTTaGGACCCTCCTGACGGAAAGTGGCAGCCCTCGCGG +
Preference number: 6 (lower is better)
Translates to: GGFHPGRRFVSL*DPPDGKWQPSR
Trigger: CCGCGAGGGCTGCCACTTTCCGTCAGGAGGGTCTCAAAGGGACACAAAGCGCCTTCCTGGATGAAACCCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000536100.1
CDS GCA 72 bp GAACAAACCCAGACTGCCGTGGTTCTGGCAGGTCAGTaGTGGGGGCCCGGGGCTTATGGGACAGGTTCAACT +
Preference number: 6 (lower is better)
Translates to: EQTQTAVVLAGQ*WGPGAYGTGST
Trigger: AGTTGAACCTGTCCCATAAGCCCCGGGCCCCCAGCACTGACCTGCCAGAACCACGGCAGTCTGGGTTTGTTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000616042.1
CDS CCA 72 bp CAAACCCAGACTGCCGTGGTTCTGGCAGGTCAGTGCTaGGGGCCCGGGGCTTATGGGACAGGTTCAACTTCT +
Preference number: 6 (lower is better)
Translates to: QTQTAVVLAGQC*GPGAYGTGSTS
Trigger: AGAAGTTGAACCTGTCCCATAAGCCCCGGGCCCCCAGCACTGACCTGCCAGAACCACGGCAGTCTGGGTTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000616042.1
CDS GCA 72 bp ATGGGACAGGTTCAACTTCTTCTGTGGCCCATACCCTaGCATGGACCCCAGCAGCAGCAGCAGCAGCAGCAG +
Preference number: 6 (lower is better)
Translates to: MGQVQLLLWPIP*HGPQQQQQQQQ
Trigger: CTGCTGCTGCTGCTGCTGCTGCTGGGGTCCATGGCAGGGTATGGGCCACAGAAGAAGTTGAACCTGTCCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000376608.9
ENST00000536100.1
ENST00000544018.6
ENST00000545517.2
ENST00000616042.1
ENST00000622710.4
CDS CCA 72 bp CCCGATGCCCTTATGGGACAGGTTCAACTTCTTCTGTaGCCCATACCCTGCCATGGACCCCAGCAGCAGCAG +
Preference number: 6 (lower is better)
Translates to: PDALMGQVQLLL*PIPCHGPQQQQ
Trigger: CTGCTGCTGCTGGGGTCCATGGCAGGGTATGGGCCACAGAAGAAGTTGAACCTGTCCCATAAGGGCATCGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000376608.9
ENST00000544018.6
CDS CCA 72 bp GGCACCCACCTTATGGGACAGGTTCAACTTCTTCTGTaGCCCATACCCTGCCATGGACCCCAGCAGCAGCAG +
Preference number: 6 (lower is better)
Translates to: GTHLMGQVQLLL*PIPCHGPQQQQ
Trigger: CTGCTGCTGCTGGGGTCCATGGCAGGGTATGGGCCACAGAAGAAGTTGAACCTGTCCCATAAGGTGGGTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000536100.1
CDS GCA 72 bp TGGTACAGCAGTTGCTCTGGCACTCCTCGTGTCTCCTaGATGGCTCCCCGATGCCCTTATGGGACAGGTTCA +
Preference number: 6 (lower is better)
Translates to: WYSSCSGTPRVS*MAPRCPYGTGS
Trigger: TGAACCTGTCCCATAAGGGCATCGGGGAGCCATGCAGGAGACACGAGGAGTGCCAGAGCAACTGCTGTACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000376608.9
ENST00000544018.6
CDS CCA 72 bp ACAGCAGTTGCTCTGGCACTCCTCGTGTCTCCTGCATaGCTCCCCGATGCCCTTATGGGACAGGTTCAACTT +
Preference number: 6 (lower is better)
Translates to: TAVALALLVSPA*LPDALMGQVQL
Trigger: AAGTTGAACCTGTCCCATAAGGGCATCGGGGAGCCATGCAGGAGACACGAGGAGTGCCAGAGCAACTGCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000376608.9
ENST00000544018.6
CDS CCA 72 bp GCAGACTCAGCACTCAGGAAAGGCCTGCCCTCTCCTTaGCTCCCCTGTGTCACCATCCTTCAAACTTGGGTT +
Preference number: 6 (lower is better)
Translates to: ADSALRKGLPSP*LPCVTILQTWV
Trigger: AACCCAAGTTTGAAGGATGGTGACACAGGGGAGCCAAGGAGAGGGCAGGCCTTTCCTGAGTGCTGAGTCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000545517.2
ENST00000616042.1
ENST00000622710.4
CDS CCA 72 bp GAGAAGTTTCTTATGGGACAGGTTCAACTTCTTCTGTaGCCCATACCCTGCCATGGACCCCAGCAGCAGCAG +
Preference number: 6 (lower is better)
Translates to: EKFLMGQVQLLL*PIPCHGPQQQQ
Trigger: CTGCTGCTGCTGGGGTCCATGGCAGGGTATGGGCCACAGAAGAAGTTGAACCTGTCCCATAAGAAACTTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000622710.4
CDS CCA 72 bp CACCATCCTTCAAACTTGGGTTTCCTGAGAAGTTTCTaGAACAAACCCAGACTGCCGTGGTTCTGGCAGGTC +
Preference number: 6 (lower is better)
Translates to: HHPSNLGFLRSF*NKPRLPWFWQV
Trigger: GACCTGCCAGAACCACGGCAGTCTGGGTTTGTTCCAGAAACTTCTCAGGAAACCCAAGTTTGAAGGATGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000616042.1
CDS CAA 72 bp CTCTCCTTGGCTCCCCTGTGTCACCATCCTTCAAACTaGGGTTTCCTGAGAAGTTTCTGGAACAAACCCAGA +
Preference number: 6 (lower is better)
Translates to: LSLAPLCHHPSN*GFLRSFWNKPR
Trigger: TCTGGGTTTGTTCCAGAAACTTCTCAGGAAACCCAAGTTTGAAGGATGGTGACACAGGGGAGCCAAGGAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000545517.2
ENST00000616042.1
CDS CAA 72 bp CTCTCCTTGGCTCCCCTGTGTCACCATCCTTCAAACTaGGGTTTCCTGAGAAGTTTCTTATGGGACAGGTTC +
Preference number: 6 (lower is better)
Translates to: LSLAPLCHHPSN*GFLRSFLWDRF
Trigger: GAACCTGTCCCATAAGAAACTTCTCAGGAAACCCAAGTTTGAAGGATGGTGACACAGGGGAGCCAAGGAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000622710.4