Pregenerated sensors for LORICRIN (Homo sapiens)
Ensembl gene IDs: ENSG00000203782Ensembl transcript IDs: ENST00000368742.4
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCAAAGAGGCTAAACAGCAGAACTAGATGCAGCCGGAGAGCTCAATaGCTTCTTCCAGGTAGGTTAAGACATGAAGGATTTGCAAACCTC | + |
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Preference number: 1 (lower is better) Translates to: PKRLNSRTRCSRRAQ*LLPGRLRHEGFANL Trigger: GAGGTTTGCAAATCCTTCATGTCTTAACCTACCTGGAAGAAGCCATTGAGCTCTCCGGCTGCATCTAGTTCTGCTGTTTAGCCTCTTTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| 3UTR GCA 90 bp | GAGGTAGTTGTACAGAAACCAAAGAGGCTAAACAGCAGAACTAGATaGAGCCGGAGAGCTCAATGGCTTCTTCCAGGTAGGTTAAGACAT | + |
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Preference number: 1 (lower is better) Translates to: EVVVQKPKRLNSRTR*SRRAQWLLPGRLRH Trigger: ATGTCTTAACCTACCTGGAAGAAGCCATTGAGCTCTCCGGCTGCATCTAGTTCTGCTGTTTAGCCTCTTTGGTTTCTGTACAACTACCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| 3UTR-3UTR CCA 90 bp | GTACAGAAACCAAAGAGGCTAAACAGCAGAACTAGATGCAGCCGGAGAGCTCAAGCCCATCGGTGCCCCTaGAAAACACCTCCAACTCCT | + |
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Preference number: 2 (lower is better) Translates to: VQKPKRLNSRTRCSRRAQAHRCP*KTPPTP Trigger: AGGAGTTGGAGGTGTTTTCCAGGGGCACCGATGGGC...TTGAGCTCTCCGGCTGCATCTAGTTCTGCTGTTTAGCCTCTTTGGTTTCTGTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| 3UTR-3UTR CCA 90 bp | GCACTGGGGTTGGGAGGTAGTTGTACAGAAACCAAAGAGGCTAAACAGCAGAACAGCCGGAGAGCTCAATaGCTTCTTCCAGGTAGGTTA | + |
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Preference number: 2 (lower is better) Translates to: ALGLGGSCTETKEAKQQNSRRAQ*LLPGRL Trigger: TAACCTACCTGGAAGAAGCCATTGAGCTCTCCGGCT...GTTCTGCTGTTTAGCCTCTTTGGTTTCTGTACAACTACCTCCCAACCCCAGTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| 3UTR GCA 72 bp | GTACAGAAACCAAAGAGGCTAAACAGCAGAACTAGATaGAGCCGGAGAGCTCAATGGCTTCTTCCAGGTAGG | + |
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Preference number: 3 (lower is better) Translates to: VQKPKRLNSRTR*SRRAQWLLPGR Trigger: CCTACCTGGAAGAAGCCATTGAGCTCTCCGGCTGCATCTAGTTCTGCTGTTTAGCCTCTTTGGTTTCTGTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| 3UTR CCA 72 bp | CTAAACAGCAGAACTAGATGCAGCCGGAGAGCTCAATaGCTTCTTCCAGGTAGGTTAAGACATGAAGGATTT | + |
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Preference number: 3 (lower is better) Translates to: LNSRTRCSRRAQ*LLPGRLRHEGF Trigger: AAATCCTTCATGTCTTAACCTACCTGGAAGAAGCCATTGAGCTCTCCGGCTGCATCTAGTTCTGCTGTTTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS-3UTR TCA 90 bp | GCCCATCGGTGCCCCTGGAAAACACCTCCAACTCCTTCGCCTCCGTGGTACCCTCGCCTCCGGAGTACTTaGCGCTCCCACCGGAGCCCC | + |
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Preference number: 4 (lower is better) Translates to: AHRCPWKTPPTPSPPWYPRLRST*RSHRSP Trigger: GGGGCTCCGGTGGGAGCGTCAAGTACTCCGGAGGCG...AGGGTACCACGGAGGCGAAGGAGTTGGAGGTGTTTTCCAGGGGCACCGATGGGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS-3UTR GCA 90 bp | GCTCTAAGCCCATCGGTGCCCCTGGAAAACACCTCCAACTCCTTCGCCTCCGTGCGTAGCCGGAGCCGCTaGCGCCAGAGGAGCCTCCGC | + |
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Preference number: 4 (lower is better) Translates to: ALSPSVPLENTSNSFASVRSRSR*RQRSLR Trigger: GCGGAGGCTCCTCTGGCGGCAGCGGCTCCGGCTACG...CACGGAGGCGAAGGAGTTGGAGGTGTTTTCCAGGGGCACCGATGGGCTTAGAGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS-3UTR GCA 90 bp | GCTCTAAGCCCATCGGTGCCCCTGGAAAACACCTCCAACTCCTTCGCCTCCGTGCGCAGCCAGAACCGCTaGTACCGCCCCCTGAGCCGC | + |
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Preference number: 4 (lower is better) Translates to: ALSPSVPLENTSNSFASVRSQNR*YRPLSR Trigger: GCGGCTCAGGGGGCGGTAGCAGCGGTTCTGGCTGCG...CACGGAGGCGAAGGAGTTGGAGGTGTTTTCCAGGGGCACCGATGGGCTTAGAGC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS-3UTR CCA 90 bp | GCCCATCGGTGCCCCTGGAAAACACCTCCAACTCCTTCGCCTCCGTGGTACCCTCTTCACGCAGTCCACTaGGGGCTGAGGGGTGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: AHRCPWKTPPTPSPPWYPLHAVH*GLRGGL Trigger: CAGCCCACCCCTCAGCCCCCAGTGGACTGCGTGAAG...AGGGTACCACGGAGGCGAAGGAGTTGGAGGTGTTTTCCAGGGGCACCGATGGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS-3UTR CCA 90 bp | GCTCTAAGCCCATCGGTGCCCCTGGAAAACACCTCCAACTCCTTCGCCTCCGTGGGCGCCTGCTTCTGCTaGGTCTGGTGGCAGATCGGG | + |
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Preference number: 4 (lower is better) Translates to: ALSPSVPLENTSNSFASVGACFC*VWWQIG Trigger: CCCGATCTGCCACCAGACCCAGCAGAAGCAGGCGCC...CACGGAGGCGAAGGAGTTGGAGGTGTTTTCCAGGGGCACCGATGGGCTTAGAGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS-3UTR GCA 90 bp | CATGAGAGCTCTAAGCCCATCGGTGCCCCTGGAAAACACCTCCAACTCCTTCGCAGATCGGGACGCCCTTaGCACTCCCGGAGCCACCCA | + |
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Preference number: 4 (lower is better) Translates to: HESSKPIGAPGKHLQLLRRSGRP*HSRSHP Trigger: TGGGTGGCTCCGGGAGTGGCAAGGGCGTCCCGATCT...GCGAAGGAGTTGGAGGTGTTTTCCAGGGGCACCGATGGGCTTAGAGCTCTCATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS-3UTR CCA 90 bp | ATGAAGGATTTGCAAACCTCGGGTAGCATCATGAGAGCTCTAAGCCCATCGGTGTGGCACTGGACCGCCTaGCCCGAGAAGCCGCCGCCG | + |
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Preference number: 4 (lower is better) Translates to: MKDLQTSGSIMRALSPSVWHWTA*PEKPPP Trigger: CGGCGGCGGCTTCTCGGGCCAGGCGGTCCAGTGCCA...CACCGATGGGCTTAGAGCTCTCATGATGCTACCCGAGGTTTGCAAATCCTTCAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS-3UTR CCA 90 bp | ATGAGAGCTCTAAGCCCATCGGTGCCCCTGGAAAACACCTCCAACTCCTTCGCCTGCTTCTGCTGGGTCTaGTGGCAGATCGGGACGCCC | + |
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Preference number: 4 (lower is better) Translates to: MRALSPSVPLENTSNSFACFCWV*WQIGTP Trigger: GGGCGTCCCGATCTGCCACCAGACCCAGCAGAAGCA...GGCGAAGGAGTTGGAGGTGTTTTCCAGGGGCACCGATGGGCTTAGAGCTCTCAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS-3UTR CCA 90 bp | GCCCATCGGTGCCCCTGGAAAACACCTCCAACTCCTTCGCCTCCGTGGTACCCTACTCCTTCGCCTCCGTaGTACCCTGGGGGATCTATT | + |
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Preference number: 4 (lower is better) Translates to: AHRCPWKTPPTPSPPWYPTPSPP*YPGGSI Trigger: AATAGATCCCCCAGGGTACCACGGAGGCGAAGGAGT...AGGGTACCACGGAGGCGAAGGAGTTGGAGGTGTTTTCCAGGGGCACCGATGGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS-3UTR GCA 90 bp | ATGAGAGCTCTAAGCCCATCGGTGCCCCTGGAAAACACCTCCAACTCCTTCGCCGTAGGCGCCTGCTTCTaGTGGGTCTGGTGGCAGATC | + |
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Preference number: 4 (lower is better) Translates to: MRALSPSVPLENTSNSFAVGACF*WVWWQI Trigger: GATCTGCCACCAGACCCAGCAGAAGCAGGCGCCTAC...GGCGAAGGAGTTGGAGGTGTTTTCCAGGGGCACCGATGGGCTTAGAGCTCTCAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS-3UTR TCA 90 bp | GCACTGGGGTTGGGAGGTAGTTGTACAGAAACCAAAGAGGCTAAACAGCAGAACGGCGCGCACGAGGTCTaGGTGACCTGCTGCGAGGAG | + |
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Preference number: 4 (lower is better) Translates to: ALGLGGSCTETKEAKQQNGAHEV*VTCCEE Trigger: CTCCTCGCAGCAGGTCACTCAGACCTCGTGCGCGCC...GTTCTGCTGTTTAGCCTCTTTGGTTTCTGTACAACTACCTCCCAACCCCAGTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS-3UTR TCA 90 bp | ATCGGTGCCCCTGGAAAACACCTCCAACTCCTTCGCCTCCGTGGTACCCTGGGGTGCAAATTTATTGACTaGGGCACTGGGGTTGGGAGG | + |
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Preference number: 4 (lower is better) Translates to: IGAPGKHLQLLRLRGTLGCKFID*GTGVGR Trigger: CCTCCCAACCCCAGTGCCTCAGTCAATAAATTTGCA...CCCCAGGGTACCACGGAGGCGAAGGAGTTGGAGGTGTTTTCCAGGGGCACCGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS-3UTR GCA 90 bp | GCTCTAAGCCCATCGGTGCCCCTGGAAAACACCTCCAACTCCTTCGCCTCCGTGAACAGCAGAACTAGATaGAGCCGGAGAGCTCAATGG | + |
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Preference number: 4 (lower is better) Translates to: ALSPSVPLENTSNSFASVNSRTR*SRRAQW Trigger: CCATTGAGCTCTCCGGCTGCATCTAGTTCTGCTGTT...CACGGAGGCGAAGGAGTTGGAGGTGTTTTCCAGGGGCACCGATGGGCTTAGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS-3UTR TCA 90 bp | GCACTGGGGTTGGGAGGTAGTTGTACAGAAACCAAAGAGGCTAAACAGCAGAACCGCACGAGGTCTGAGTaGCCTGCTGCGAGGAGACGT | + |
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Preference number: 4 (lower is better) Translates to: ALGLGGSCTETKEAKQQNRTRSE*PAARRR Trigger: ACGTCTCCTCGCAGCAGGTCACTCAGACCTCGTGCG...GTTCTGCTGTTTAGCCTCTTTGGTTTCTGTACAACTACCTCCCAACCCCAGTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS-3UTR GCA 90 bp | GTACAGAAACCAAAGAGGCTAAACAGCAGAACTAGATGCAGCCGGAGAGCTCAAGGCCAGGTAGGCGCCTaGTTCTGCTGGGTCTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: VQKPKRLNSRTRCSRRAQGQVGA*FCWVWW Trigger: CCACCAGACCCAGCAGAAGCAGGCGCCTACCTGGCC...TTGAGCTCTCCGGCTGCATCTAGTTCTGCTGTTTAGCCTCTTTGGTTTCTGTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS-3UTR CCA 90 bp | GCACTGGGGTTGGGAGGTAGTTGTACAGAAACCAAAGAGGCTAAACAGCAGAACTTCTGCTGGGTCTGGTaGCAGATCGGGACGCCCTTG | + |
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Preference number: 4 (lower is better) Translates to: ALGLGGSCTETKEAKQQNFCWVW*QIGTPL Trigger: CAAGGGCGTCCCGATCTGCCACCAGACCCAGCAGAA...GTTCTGCTGTTTAGCCTCTTTGGTTTCTGTACAACTACCTCCCAACCCCAGTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS-3UTR CCA 90 bp | GACATGAAGGATTTGCAAACCTCGGGTAGCATCATGAGAGCTCTAAGCCCATCGGCCCATCGGTGCCCCTaGAAAACACCTCCAACTCCT | + |
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Preference number: 4 (lower is better) Translates to: DMKDLQTSGSIMRALSPSAHRCP*KTPPTP Trigger: AGGAGTTGGAGGTGTTTTCCAGGGGCACCGATGGGC...CGATGGGCTTAGAGCTCTCATGATGCTACCCGAGGTTTGCAAATCCTTCATGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS-3UTR CCA 90 bp | CGGAGAGCTCAATGGCTTCTTCCAGGTAGGTTAAGACATGAAGGATTTGCAAACGCCTCCGTGGTACCCTaGGGGATCTATTTGGACGGC | + |
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Preference number: 4 (lower is better) Translates to: RRAQWLLPGRLRHEGFANASVVP*GIYLDG Trigger: GCCGTCCAAATAGATCCCCCAGGGTACCACGGAGGC...GTTTGCAAATCCTTCATGTCTTAACCTACCTGGAAGAAGCCATTGAGCTCTCCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS-3UTR TCA 90 bp | ATGAGAGCTCTAAGCCCATCGGTGCCCCTGGAAAACACCTCCAACTCCTTCGCCAATTTGCAAATTTATTaGCTGAGGCACTGGGGTTGG | + |
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Preference number: 4 (lower is better) Translates to: MRALSPSVPLENTSNSFANLQIY*LRHWGW Trigger: CCAACCCCAGTGCCTCAGTCAATAAATTTGCAAATT...GGCGAAGGAGTTGGAGGTGTTTTCCAGGGGCACCGATGGGCTTAGAGCTCTCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS-3UTR CCA 90 bp | AGCAGAACTAGATGCAGCCGGAGAGCTCAATGGCTTCTTCCAGGTAGGTTAAGAAGCCGGAGAGCTCAATaGCTTCTTCCAGGTAGGTTA | + |
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Preference number: 4 (lower is better) Translates to: SRTRCSRRAQWLLPGRLRSRRAQ*LLPGRL Trigger: TAACCTACCTGGAAGAAGCCATTGAGCTCTCCGGCT...TCTTAACCTACCTGGAAGAAGCCATTGAGCTCTCCGGCTGCATCTAGTTCTGCT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS GCA 90 bp | CCCCTGAGCCGCCGCCGCCGAAGAAGCCGCAGCCACCACCGCCGCTaGCGCCGCCACCGCCACCGCCGCCAGAGGTCTTCACGCAGTCCA | + |
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Preference number: 5 (lower is better) Translates to: PLSRRRRRSRSHHRR*RRHRHRRQRSSRSP Trigger: TGGACTGCGTGAAGACCTCTGGCGGCGGTGGCGGTGGCGGCGGCAGCGGCGGTGGTGGCTGCGGCTTCTTCGGCGGCGGCGGCTCAGGGG 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS CCA 90 bp | GGGATCTATTTGGACGGCCAGGTAGGCGCCTGCTTCTGCTGGGTCTaGTGGCAGATCGGGACGCCCTTGCCACTCCCGGAGCCACCCACG | + |
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Preference number: 5 (lower is better) Translates to: GIYLDGQVGACFCWV*WQIGTPLPLPEPPT Trigger: CGTGGGTGGCTCCGGGAGTGGCAAGGGCGTCCCGATCTGCCACCAGACCCAGCAGAAGCAGGCGCCTACCTGGCCGTCCAAATAGATCCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS CCA 90 bp | CCCTGGGGGATCTATTTGGACGGCCAGGTAGGCGCCTGCTTCTGCTaGGTCTGGTGGCAGATCGGGACGCCCTTGCCACTCCCGGAGCCA | + |
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Preference number: 5 (lower is better) Translates to: PWGIYLDGQVGACFC*VWWQIGTPLPLPEP Trigger: TGGCTCCGGGAGTGGCAAGGGCGTCCCGATCTGCCACCAGACCCAGCAGAAGCAGGCGCCTACCTGGCCGTCCAAATAGATCCCCCAGGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS-3UTR CAA 90 bp | AGCCCATCGGTGCCCCTGGAAAACACCTCCAACTCCTTCGCCTCCGTGGTACCCCCGCCTCCGGAGTACTaGACGCTCCCACCGGAGCCC | + |
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Preference number: 5 (lower is better) Translates to: SPSVPLENTSNSFASVVPPPPEY*TLPPEP Trigger: GGGCTCCGGTGGGAGCGTCAAGTACTCCGGAGGCGG...GGGTACCACGGAGGCGAAGGAGTTGGAGGTGTTTTCCAGGGGCACCGATGGGCT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS GCA 90 bp | GTACCCTGGGGGATCTATTTGGACGGCCAGGTAGGCGCCTGCTTCTaGTGGGTCTGGTGGCAGATCGGGACGCCCTTGCCACTCCCGGAG | + |
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Preference number: 5 (lower is better) Translates to: VPWGIYLDGQVGACF*WVWWQIGTPLPLPE Trigger: CTCCGGGAGTGGCAAGGGCGTCCCGATCTGCCACCAGACCCAGCAGAAGCAGGCGCCTACCTGGCCGTCCAAATAGATCCCCCAGGGTAC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS GCA 90 bp | TCCGTGGTACCCTGGGGGATCTATTTGGACGGCCAGGTAGGCGCCTaGTTCTGCTGGGTCTGGTGGCAGATCGGGACGCCCTTGCCACTC | + |
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Preference number: 5 (lower is better) Translates to: SVVPWGIYLDGQVGA*FCWVWWQIGTPLPL Trigger: GAGTGGCAAGGGCGTCCCGATCTGCCACCAGACCCAGCAGAAGCAGGCGCCTACCTGGCCGTCCAAATAGATCCCCCAGGGTACCACGGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS-3UTR CAA 90 bp | ATGAAGGATTTGCAAACCTCGGGTAGCATCATGAGAGCTCTAAGCCCATCGGTGCAGATCGGGACGCCCTaGCCACTCCCGGAGCCACCC | + |
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Preference number: 5 (lower is better) Translates to: MKDLQTSGSIMRALSPSVQIGTP*PLPEPP Trigger: GGGTGGCTCCGGGAGTGGCAAGGGCGTCCCGATCTG...CACCGATGGGCTTAGAGCTCTCATGATGCTACCCGAGGTTTGCAAATCCTTCAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS-3UTR CAA 90 bp | AGAACTAGATGCAGCCGGAGAGCTCAATGGCTTCTTCCAGGTAGGTTAAGACATCCCTGGGGGATCTATTaGGACGGCCAGGTAGGCGCC | + |
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Preference number: 5 (lower is better) Translates to: RTRCSRRAQWLLPGRLRHPWGIY*DGQVGA Trigger: GGCGCCTACCTGGCCGTCCAAATAGATCCCCCAGGG...ATGTCTTAACCTACCTGGAAGAAGCCATTGAGCTCTCCGGCTGCATCTAGTTCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS-3UTR CAA 90 bp | AGCCCATCGGTGCCCCTGGAAAACACCTCCAACTCCTTCGCCTCCGTGGTACCCGAATTTGCAAATTTATaGACTGAGGCACTGGGGTTG | + |
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Preference number: 5 (lower is better) Translates to: SPSVPLENTSNSFASVVPEFANL*TEALGL Trigger: CAACCCCAGTGCCTCAGTCAATAAATTTGCAAATTC...GGGTACCACGGAGGCGAAGGAGTTGGAGGTGTTTTCCAGGGGCACCGATGGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS TCA 72 bp | CTCCGTAACTCGGCTGGGGCGCGCACGAGGTCTGAGTaGCCTGCTGCGAGGAGACGTAGCCGGAGCCGCTGC | + |
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Preference number: 6 (lower is better) Translates to: LRNSAGARTRSE*PAARRRSRSRC Trigger: GCAGCGGCTCCGGCTACGTCTCCTCGCAGCAGGTCACTCAGACCTCGTGCGCGCCCCAGCCGAGTTACGGAG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS CCA 72 bp | TTGGACGGCCAGGTAGGCGCCTGCTTCTGCTGGGTCTaGTGGCAGATCGGGACGCCCTTGCCACTCCCGGAG | + |
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Preference number: 6 (lower is better) Translates to: LDGQVGACFCWV*WQIGTPLPLPE Trigger: CTCCGGGAGTGGCAAGGGCGTCCCGATCTGCCACCAGACCCAGCAGAAGCAGGCGCCTACCTGGCCGTCCAA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS GCA 72 bp | CCCTGGGGGATCTATTTGGACGGCCAGGTAGGCGCCTaGTTCTGCTGGGTCTGGTGGCAGATCGGGACGCCC | + |
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Preference number: 6 (lower is better) Translates to: PWGIYLDGQVGA*FCWVWWQIGTP Trigger: GGGCGTCCCGATCTGCCACCAGACCCAGCAGAAGCAGGCGCCTACCTGGCCGTCCAAATAGATCCCCCAGGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS GCA 72 bp | GGGATCTATTTGGACGGCCAGGTAGGCGCCTGCTTCTaGTGGGTCTGGTGGCAGATCGGGACGCCCTTGCCA | + |
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Preference number: 6 (lower is better) Translates to: GIYLDGQVGACF*WVWWQIGTPLP Trigger: TGGCAAGGGCGTCCCGATCTGCCACCAGACCCAGCAGAAGCAGGCGCCTACCTGGCCGTCCAAATAGATCCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS CAA 90 bp | AACACCTCCAACTCCTTCGCCTCCGTGGTACCCTGGGGGATCTATTaGGACGGCCAGGTAGGCGCCTGCTTCTGCTGGGTCTGGTGGCAG | + |
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Preference number: 6 (lower is better) Translates to: NTSNSFASVVPWGIY*DGQVGACFCWVWWQ Trigger: CTGCCACCAGACCCAGCAGAAGCAGGCGCCTACCTGGCCGTCCAAATAGATCCCCCAGGGTACCACGGAGGCGAAGGAGTTGGAGGTGTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS CCA 72 bp | ATCTATTTGGACGGCCAGGTAGGCGCCTGCTTCTGCTaGGTCTGGTGGCAGATCGGGACGCCCTTGCCACTC | + |
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Preference number: 6 (lower is better) Translates to: IYLDGQVGACFC*VWWQIGTPLPL Trigger: GAGTGGCAAGGGCGTCCCGATCTGCCACCAGACCCAGCAGAAGCAGGCGCCTACCTGGCCGTCCAAATAGAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS CAA 72 bp | AACTCCTTCGCCTCCGTGGTACCCTGGGGGATCTATTaGGACGGCCAGGTAGGCGCCTGCTTCTGCTGGGTC | + |
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Preference number: 6 (lower is better) Translates to: NSFASVVPWGIY*DGQVGACFCWV Trigger: GACCCAGCAGAAGCAGGCGCCTACCTGGCCGTCCAAATAGATCCCCCAGGGTACCACGGAGGCGAAGGAGTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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| CDS CCA 72 bp | GAAAACACCTCCAACTCCTTCGCCTCCGTGGTACCCTaGGGGATCTATTTGGACGGCCAGGTAGGCGCCTGC | + |
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Preference number: 6 (lower is better) Translates to: ENTSNSFASVVP*GIYLDGQVGAC Trigger: GCAGGCGCCTACCTGGCCGTCCAAATAGATCCCCCAGGGTACCACGGAGGCGAAGGAGTTGGAGGTGTTTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368742.4 |
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