Pregenerated sensors for LOH12CR2 (Homo sapiens)

Ensembl gene IDs: ENSG00000205791

Ensembl transcript IDs: ENST00000381800.3, ENST00000628428.1

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TCCTCTTCCGCAGTTCTGGCTTCGAGGAGGTCAAGCCCTTTAAGGTaGCATCGCCCTAAGTCGCAGGAGCGGGTCTCTCCGCCCCTCCCT	+
Preference number: 5 (lower is better) Translates to: SSSAVLASRRSSPLR*HRPKSQERVSPPLP Trigger: AGGGAGGGGCGGAGAGACCCGCTCCTGCGACTTAGGGCGATGCCACCTTAAAGGGCTTGACCTCCTCGAAGCCAGAACTGCGGAAGAGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000381800.3 ENST00000628428.1
CDS CCA 90 bp	AAAGAGGAAATCTGGGAGGGGATGCAAGGACTCTCCAAAAGGGAATaGTCTCACTGCTTAGTGGGCCCTTCCCAGTCCCATCAGCCTGGT	+
Preference number: 5 (lower is better) Translates to: KEEIWEGMQGLSKRE*SHCLVGPSQSHQPG Trigger: ACCAGGCTGATGGGACTGGGAAGGGCCCACTAAGCAGTGAGACCATTCCCTTTTGGAGAGTCCTTGCATCCCCTCCCAGATTTCCTCTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000381800.3 ENST00000628428.1
CDS CCA 90 bp	CCCAGCTCTTCAGAATTCAAAATGAGCTTTGCATCCAAGCTGTTGTaGGTTCGAATCCTGGGTCTATCTAGCGTTTCTTTCTCCATCCTC	+
Preference number: 5 (lower is better) Translates to: PSSSEFKMSFASKLL*VRILGLSSVSFSIL Trigger: GAGGATGGAGAAAGAAACGCTAGATAGACCCAGGATTCGAACCCACAACAGCTTGGATGCAAAGCTCATTTTGAATTCTGAAGAGCTGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000381800.3 ENST00000628428.1
CDS CCA 72 bp	GCAGTTCTGGCTTCGAGGAGGTCAAGCCCTTTAAGGTaGCATCGCCCTAAGTCGCAGGAGCGGGTCTCTCCG	+
Preference number: 6 (lower is better) Translates to: AVLASRRSSPLR*HRPKSQERVSP Trigger: CGGAGAGACCCGCTCCTGCGACTTAGGGCGATGCCACCTTAAAGGGCTTGACCTCCTCGAAGCCAGAACTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000381800.3 ENST00000628428.1
CDS GCA 72 bp	GGGATGCAAGGACTCTCCAAAAGGGAATGGTCTCACTaGTTAGTGGGCCCTTCCCAGTCCCATCAGCCTGGT	+
Preference number: 6 (lower is better) Translates to: GMQGLSKREWSH*LVGPSQSHQPG Trigger: ACCAGGCTGATGGGACTGGGAAGGGCCCACTAAGCAGTGAGACCATTCCCTTTTGGAGAGTCCTTGCATCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000381800.3 ENST00000628428.1
CDS CCA 72 bp	ATCTGGGAGGGGATGCAAGGACTCTCCAAAAGGGAATaGTCTCACTGCTTAGTGGGCCCTTCCCAGTCCCAT	+
Preference number: 6 (lower is better) Translates to: IWEGMQGLSKRE*SHCLVGPSQSH Trigger: ATGGGACTGGGAAGGGCCCACTAAGCAGTGAGACCATTCCCTTTTGGAGAGTCCTTGCATCCCCTCCCAGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000381800.3 ENST00000628428.1
CDS CAA 90 bp	ACTCCCAGCTCTTCAGAATTCAAAATGAGCTTTGCATCCAAGCTGTaGTGGGTTCGAATCCTGGGTCTATCTAGCGTTTCTTTCTCCATC	+
Preference number: 6 (lower is better) Translates to: TPSSSEFKMSFASKL*WVRILGLSSVSFSI Trigger: GATGGAGAAAGAAACGCTAGATAGACCCAGGATTCGAACCCACAACAGCTTGGATGCAAAGCTCATTTTGAATTCTGAAGAGCTGGGAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000381800.3 ENST00000628428.1
CDS CAA 72 bp	TCTTCAGAATTCAAAATGAGCTTTGCATCCAAGCTGTaGTGGGTTCGAATCCTGGGTCTATCTAGCGTTTCT	+
Preference number: 6 (lower is better) Translates to: SSEFKMSFASKL*WVRILGLSSVS Trigger: AGAAACGCTAGATAGACCCAGGATTCGAACCCACAACAGCTTGGATGCAAAGCTCATTTTGAATTCTGAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000381800.3 ENST00000628428.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu