RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LNPK (Homo sapiens)

Ensembl gene IDs: ENSG00000144320

Ensembl transcript IDs: ENST00000272748.9, ENST00000392540.6, ENST00000409660.5, ENST00000431754.1, ENST00000445472.1, ENST00000466445.1, ENST00000475515.1, ENST00000479012.1, ENST00000483230.5, ENST00000544803.5

Found 284 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GACATTCATGAGGGATCCGCTCCATGCTCAAAACACCTCCAGCAATaGGGATCAAATTTCAACATGAGATTTGCAGGGGTCAAACAAACC +
Preference number: 1 (lower is better)
Translates to: DIHEGSAPCSKHLQQ*GSNFNMRFAGVKQT
Trigger: GGTTTGTTTGACCCCTGCAAATCTCATGTTGAAATTTGATCCCCATTGCTGGAGGTGTTTTGAGCATGGAGCGGATCCCTCATGAATGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR TCA 90 bp TTTCCCCTGACACACGCACATCCACACCCAAAGCTATACCTCTTCTaGTACAACTATGTTCTCCATAACAATAGTGACTGTGTGTCTAAT +
Preference number: 1 (lower is better)
Translates to: FPLTHAHPHPKLYLF*YNYVLHNNSDCVSN
Trigger: ATTAGACACACAGTCACTATTGTTATGGAGAACATAGTTGTATCAGAAGAGGTATAGCTTTGGGTGTGGATGTGCGTGTGTCAGGGGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR TCA 90 bp AGTGTAAAATTCATGGTTCAATACAAATCATCCTGCATTAACAGTTaGGATCTAAGTTCTGGCTTGGCTCAGGTGCCTGCTATCCCTATG +
Preference number: 1 (lower is better)
Translates to: SVKFMVQYKSSCINS*DLSSGLAQVPAIPM
Trigger: CATAGGGATAGCAGGCACCTGAGCCAAGCCAGAACTTAGATCTCAACTGTTAATGCAGGATGATTTGTATTGAACCATGAATTTTACACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR CCA 90 bp ATGTCAATACTGCCAAGCAGTGAAACAAGAACTGAGAGTTTTCACTaGATTTGGCAACAAAGTATTTATTCACACAATATGCATCAAGCA +
Preference number: 1 (lower is better)
Translates to: MSILPSSETRTESFH*IWQQSIYSHNMHQA
Trigger: TGCTTGATGCATATTGTGTGAATAAATACTTTGTTGCCAAATCCAGTGAAAACTCTCAGTTCTTGTTTCACTGCTTGGCAGTATTGACAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR GCA 90 bp GAAGGCAGTACAACAGAAATTAAGAGTAAATCCTCTGAAGTCATTTaGCTATATTCAAATCCCTCTTTTTCCACTTACCAGGTATACAAT +
Preference number: 1 (lower is better)
Translates to: EGSTTEIKSKSSEVI*LYSNPSFSTYQVYN
Trigger: ATTGTATACCTGGTAAGTGGAAAAAGAGGGATTTGAATATAGGCAAATGACTTCAGAGGATTTACTCTTAATTTCTGTTGTACTGCCTTC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR CCA 90 bp AACTGTAACATACAGCAGATCACCAATTCACAATCATCTCTACCTTaGTTCATCTTTACACAAGTACTTGAATTCCCTTTAATGTCTCTT +
Preference number: 1 (lower is better)
Translates to: NCNIQQITNSQSSLP*FIFTQVLEFPLMSL
Trigger: AAGAGACATTAAAGGGAATTCAAGTACTTGTGTAAAGATGAACCAAGGTAGAGATGATTGTGAATTGGTGATCTGCTGTATGTTACAGTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR TCA 90 bp CTAAGTTCTGGCTTGGCTCAGGTGCCTGCTATCCCTATGACCCTGTGTCTTAGCACTCCTGACCCCAGATaGTCTGCCCGCCTCAGCCTC +
Preference number: 2 (lower is better)
Translates to: LSSGLAQVPAIPMTLCLSTPDPR*SARLSL
Trigger: GAGGCTGAGGCGGGCAGATCATCTGGGGTCAGGAGT...GCTAAGACACAGGGTCATAGGGATAGCAGGCACCTGAGCCAAGCCAGAACTTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR CCA 90 bp CTAAGTTCTGGCTTGGCTCAGGTGCCTGCTATCCCTATGACCCTGTGTCTTAGCGTGCCAGCCTCTGCTTaGCTTCTGGTGAGAGCCTCA +
Preference number: 2 (lower is better)
Translates to: LSSGLAQVPAIPMTLCLSVPASA*LLVRAS
Trigger: TGAGGCTCTCACCAGAAGCCAAGCAGAGGCTGGCAC...GCTAAGACACAGGGTCATAGGGATAGCAGGCACCTGAGCCAAGCCAGAACTTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR TCA 90 bp CTAAGTTCTGGCTTGGCTCAGGTGCCTGCTATCCCTATGACCCTGTGTCTTAGCCCTTCTGGCATGGGATaGCAAAGCACAAAGGCCCTC +
Preference number: 2 (lower is better)
Translates to: LSSGLAQVPAIPMTLCLSPSGMG*QSTKAL
Trigger: GAGGGCCTTTGTGCTTTGTCATCCCATGCCAGAAGG...GCTAAGACACAGGGTCATAGGGATAGCAGGCACCTGAGCCAAGCCAGAACTTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR GCA 90 bp AGTGCCCCCAATGTCTATGTGAGTGGGAGCGTATCTCAGGCAGAGGAAAAGCTCCCTCTCTTACCCTTCTaGCTTCTGGCATGGGATGAC +
Preference number: 2 (lower is better)
Translates to: SAPNVYVSGSVSQAEEKLPLLPF*LLAWDD
Trigger: GTCATCCCATGCCAGAAGGCAGAAGGGTAAGAGAGG...GAGCTTTTCCTCTGCCTGAGATACGCTCCCACTCACATAGACATTGGGGGCACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR CCA 90 bp CTAAGTTCTGGCTTGGCTCAGGTGCCTGCTATCCCTATGACCCTGTGTCTTAGCTTCAGATGGGGAGTTTaGGAAGGCATCTCTCTGAGG +
Preference number: 2 (lower is better)
Translates to: LSSGLAQVPAIPMTLCLSFRWGV*EGISLR
Trigger: CCTCAGAGAGATGCCTTCCCAAACTCCCCATCTGAA...GCTAAGACACAGGGTCATAGGGATAGCAGGCACCTGAGCCAAGCCAGAACTTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR TCA 90 bp CAGCAATGGGGATCAAATTTCAACATGAGATTTGCAGGGGTCAAACAAACCACAACTCCTGACCCCAGATaGTCTGCCCGCCTCAGCCTC +
Preference number: 2 (lower is better)
Translates to: QQWGSNFNMRFAGVKQTTTPDPR*SARLSL
Trigger: GAGGCTGAGGCGGGCAGATCATCTGGGGTCAGGAGT...TGTGGTTTGTTTGACCCCTGCAAATCTCATGTTGAAATTTGATCCCCATTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR TCA 90 bp AGTGCCCCCAATGTCTATGTGAGTGGGAGCGTATCTCAGGCAGAGGAAAAGCTCTCAAAGCTGGAGATCTaGGATTCAGAGAGACAGATG +
Preference number: 2 (lower is better)
Translates to: SAPNVYVSGSVSQAEEKLSKLEI*DSERQM
Trigger: CATCTGTCTCTCTGAATCTCAGATCTCCAGCTTTGA...GAGCTTTTCCTCTGCCTGAGATACGCTCCCACTCACATAGACATTGGGGGCACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR TCA 90 bp AGTGCCCCCAATGTCTATGTGAGTGGGAGCGTATCTCAGGCAGAGGAAAAGCTCAGGCAAAATTTAAGCTaGAATCTGAGGCAGGAAAGG +
Preference number: 2 (lower is better)
Translates to: SAPNVYVSGSVSQAEEKLRQNLS*NLRQER
Trigger: CCTTTCCTGCCTCAGATTTCAGCTTAAATTTTGCCT...GAGCTTTTCCTCTGCCTGAGATACGCTCCCACTCACATAGACATTGGGGGCACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR TCA 90 bp CTAAGTTCTGGCTTGGCTCAGGTGCCTGCTATCCCTATGACCCTGTGTCTTAGCACAGCTTTGGTAATCTaGAATGATGGAGGCCAAGAT +
Preference number: 2 (lower is better)
Translates to: LSSGLAQVPAIPMTLCLSTALVI*NDGGQD
Trigger: ATCTTGGCCTCCATCATTTCAGATTACCAAAGCTGT...GCTAAGACACAGGGTCATAGGGATAGCAGGCACCTGAGCCAAGCCAGAACTTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR TCA 90 bp CTAAGTTCTGGCTTGGCTCAGGTGCCTGCTATCCCTATGACCCTGTGTCTTAGCTTTGGTAATCTGAAATaGTGGAGGCCAAGATTAGAA +
Preference number: 2 (lower is better)
Translates to: LSSGLAQVPAIPMTLCLSFGNLK*WRPRLE
Trigger: TTCTAATCTTGGCCTCCATCATTTCAGATTACCAAA...GCTAAGACACAGGGTCATAGGGATAGCAGGCACCTGAGCCAAGCCAGAACTTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR GCA 90 bp GGCATGGTCAGAGAACTGAAAGGAGTTCCATATGGCTACAGCACAATGATGGCGGAGAATTCGTACCAGTaGCAACGTAGTTACAGTTCT +
Preference number: 2 (lower is better)
Translates to: GMVRELKGVPYGYSTMMAENSYQ*QRSYSS
Trigger: AGAACTGTAACTACGTTGGCACTGGTACGAATTCTC...CGCCATCATTGTGCTGTAGCCATATGGAACTCCTTTCAGTTCTCTGACCATGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR GCA 90 bp CTAAGTTCTGGCTTGGCTCAGGTGCCTGCTATCCCTATGACCCTGTGTCTTAGCTCCTCTGAAGTCATTTaGCTATATTCAAATCCCTCT +
Preference number: 2 (lower is better)
Translates to: LSSGLAQVPAIPMTLCLSSSEVI*LYSNPS
Trigger: AGAGGGATTTGAATATAGGCAAATGACTTCAGAGGA...GCTAAGACACAGGGTCATAGGGATAGCAGGCACCTGAGCCAAGCCAGAACTTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR CCA 90 bp CTAAGTTCTGGCTTGGCTCAGGTGCCTGCTATCCCTATGACCCTGTGTCTTAGCAAAATTACAAATGGCTaGCCTACGATGTTCCTGAAT +
Preference number: 2 (lower is better)
Translates to: LSSGLAQVPAIPMTLCLSKITNG*PTMFLN
Trigger: ATTCAGGAACATCGTAGGCCAGCCATTTGTAATTTT...GCTAAGACACAGGGTCATAGGGATAGCAGGCACCTGAGCCAAGCCAGAACTTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR CCA 90 bp CAGCAATGGGGATCAAATTTCAACATGAGATTTGCAGGGGTCAAACAAACCACACAGGCTGGAGTACAATaGCGCAATCTCTGCTCACTG +
Preference number: 2 (lower is better)
Translates to: QQWGSNFNMRFAGVKQTTQAGVQ*RNLCSL
Trigger: CAGTGAGCAGAGATTGCGCCATTGTACTCCAGCCTG...TGTGGTTTGTTTGACCCCTGCAAATCTCATGTTGAAATTTGATCCCCATTGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR TCA 90 bp GGCATGGTCAGAGAACTGAAAGGAGTTCCATATGGCTACAGCACAATGATGGCGAAGAAACACTGCAGTTaGCTGTTTCATTGCATTCTC +
Preference number: 2 (lower is better)
Translates to: GMVRELKGVPYGYSTMMAKKHCS*LFHCIL
Trigger: GAGAATGCAATGAAACAGTCAACTGCAGTGTTTCTT...CGCCATCATTGTGCTGTAGCCATATGGAACTCCTTTCAGTTCTCTGACCATGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR TCA 90 bp GCCGTCAAAGATTCTCCACTTAGTTCAGGATCAGGAATAGAATCAGCTCCAGGAGTTGGTTTCAATCACTaGGGCTTCCTCATTCTCAGT +
Preference number: 2 (lower is better)
Translates to: AVKDSPLSSGSGIESAPGVGFNH*GFLILS
Trigger: ACTGAGAATGAGGAAGCCTCAGTGATTGAAACCAAC...TCCTGGAGCTGATTCTATTCCTGATCCTGAACTAAGTGGAGAATCTTTGACGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000431754.1
3UTR-3UTR CCA 90 bp CAGCAATGGGGATCAAATTTCAACATGAGATTTGCAGGGGTCAAACAAACCACAAGCCACCACCACACCTaGCCCCTCATTTTCTGTTTT +
Preference number: 2 (lower is better)
Translates to: QQWGSNFNMRFAGVKQTTSHHHT*PLIFCF
Trigger: AAAACAGAAAATGAGGGGCCAGGTGTGGTGGTGGCT...TGTGGTTTGTTTGACCCCTGCAAATCTCATGTTGAAATTTGATCCCCATTGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR CAA 90 bp CTTAGTTCAGGATCAGGAATAGAATCAGCTCCAGGAACTGTGGAGTaGGTTTCAATCACTGAGGCTTCCTCATTCTCAGTCTCTTGTTTC +
Preference number: 2 (lower is better)
Translates to: LSSGSGIESAPGTVE*VSITEASSFSVSCF
Trigger: GAAACAAGAGACTGAGAATGAGGAAGCCTCAGTGATTGAAACCAACTCCACAGTTCCTGGAGCTGATTCTATTCCTGATCCTGAACTAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000431754.1
3UTR CAA 90 bp GCCTTTGGATTTCCCAGGTTCCAGAACTGTGAGCCAAATAAATTTTaGTTCATCACGTTACCCAGTCTGTGGTATTCTGTTATAGCAGCC +
Preference number: 2 (lower is better)
Translates to: AFGFPRFQNCEPNKF*FITLPSLWYSVIAA
Trigger: GGCTGCTATAACAGAATACCACAGACTGGGTAACGTGATGAACAAAAATTTATTTGGCTCACAGTTCTGGAACCTGGGAAATCCAAAGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR TCA 90 bp TGGATTGTGAGAGACAGGCCAGTAGGCAGGCAAATATATAGCTCTAAAGTAAAGCCAAGACTACAGACCTaGAATTTAAGCCCAATACGG +
Preference number: 2 (lower is better)
Translates to: WIVRDRPVGRQIYSSKVKPRLQT*NLSPIR
Trigger: CCGTATTGGGCTTAAATTTCAGGTCTGTAGTCTTGG...CTTTACTTTAGAGCTATATATTTGCCTGCCTACTGGCCTGTCTCTCACAATCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR TCA 90 bp CAGCAATGGGGATCAAATTTCAACATGAGATTTGCAGGGGTCAAACAAACCACACCAAGACTACAGACCTaGAATTTAAGCCCAATACGG +
Preference number: 2 (lower is better)
Translates to: QQWGSNFNMRFAGVKQTTPRLQT*NLSPIR
Trigger: CCGTATTGGGCTTAAATTTCAGGTCTGTAGTCTTGG...TGTGGTTTGTTTGACCCCTGCAAATCTCATGTTGAAATTTGATCCCCATTGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR TCA 90 bp AGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATATGCAGAATGAAGAAAGCATGGTCAGAGAACTaGAAGGAGTTCCATATGGCT +
Preference number: 2 (lower is better)
Translates to: SPLVLGRNPRERICRMKKAWSEN*KEFHMA
Trigger: AGCCATATGGAACTCCTTTCAGTTCTCTGACCATGC...TTTCTTCATTCTGCATATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR GCA 90 bp AAAGATTCTCCACTTAGTTCAGGATCAGGAATAGAATCAGCTCCAGGAACTGTGGAACCTTCCACCACCTaGCTCTTCTCAAAACTAAAC +
Preference number: 2 (lower is better)
Translates to: KDSPLSSGSGIESAPGTVEPSTT*LFSKLN
Trigger: GTTTAGTTTTGAGAAGAGGCAGGTGGTGGAAGGTTC...CACAGTTCCTGGAGCTGATTCTATTCCTGATCCTGAACTAAGTGGAGAATCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000431754.1
3UTR-3UTR CCA 90 bp CAGCAATGGGGATCAAATTTCAACATGAGATTTGCAGGGGTCAAACAAACCACACAGGCTCAAAAACTCTaGTTACTATACCGGATGTCC +
Preference number: 2 (lower is better)
Translates to: QQWGSNFNMRFAGVKQTTQAQKL*LLYRMS
Trigger: GGACATCCGGTATAGTAACCAGAGTTTTTGAGCCTG...TGTGGTTTGTTTGACCCCTGCAAATCTCATGTTGAAATTTGATCCCCATTGCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR TCA 90 bp GAGAGACAGATGGTAAGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATAATTGTGCTAGACCCTTaGGATACAGACATGAATAAG +
Preference number: 2 (lower is better)
Translates to: ERQMVSPLVLGRNPRERIIVLDP*DTDMNK
Trigger: CTTATTCATGTCTGTATCTCAAGGGTCTAGCACAAT...TATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACTTACCATCTGTCTCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR CCA 90 bp TCTGAGGAGGCAAAATTTAAGCTGAAATCTGAGGCAGGAAAGGGCATGGTCAGAAAAATTACAAATGGCTaGCCTACGATGTTCCTGAAT +
Preference number: 2 (lower is better)
Translates to: SEEAKFKLKSEAGKGMVRKITNG*PTMFLN
Trigger: ATTCAGGAACATCGTAGGCCAGCCATTTGTAATTTT...TCTGACCATGCCCTTTCCTGCCTCAGATTTCAGCTTAAATTTTGCCTCCTCAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR CCA 90 bp GTTATAGCAGCCCAAACGGACTTAAATACATACTCTCTCTACAACTCAGCTTTCCAGGCTCAAAAACTCTaGTTACTATACCGGATGTCC +
Preference number: 2 (lower is better)
Translates to: VIAAQTDLNTYSLYNSAFQAQKL*LLYRMS
Trigger: GGACATCCGGTATAGTAACCAGAGTTTTTGAGCCTG...GAAAGCTGAGTTGTAGAGAGAGTATGTATTTAAGTCCGTTTGGGCTGCTATAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR CCA 90 bp GTTATAGCAGCCCAAACGGACTTAAATACATACTCTCTCTACAACTCAGCTTTCGAAAGGAGTTCCATATaGCTACAGCACAATGATGGC +
Preference number: 2 (lower is better)
Translates to: VIAAQTDLNTYSLYNSAFERSSI*LQHNDG
Trigger: GCCATCATTGTGCTGTAGCCATATGGAACTCCTTTC...GAAAGCTGAGTTGTAGAGAGAGTATGTATTTAAGTCCGTTTGGGCTGCTATAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR TCA 90 bp TCCAGAACTGTGAGCCAAATAAATTTTTGTTCATCACGTTACCCAGTCTGTGGTAGGCAAAATTTAAGCTaGAATCTGAGGCAGGAAAGG +
Preference number: 2 (lower is better)
Translates to: SRTVSQINFCSSRYPVCGRQNLS*NLRQER
Trigger: CCTTTCCTGCCTCAGATTTCAGCTTAAATTTTGCCT...ACCACAGACTGGGTAACGTGATGAACAAAAATTTATTTGGCTCACAGTTCTGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR GCA 90 bp TGGATTGTGAGAGACAGGCCAGTAGGCAGGCAAATATATAGCTCTAAAGTAAAGGAGAATTCGTACCAGTaGCTATGTGGTAACAACTTT +
Preference number: 2 (lower is better)
Translates to: WIVRDRPVGRQIYSSKVKENSYQ*LCGNNF
Trigger: AAAGTTGTTACCACATAGGCACTGGTACGAATTCTC...CTTTACTTTAGAGCTATATATTTGCCTGCCTACTGGCCTGTCTCTCACAATCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR GCA 90 bp CAGCAATGGGGATCAAATTTCAACATGAGATTTGCAGGGGTCAAACAAACCACAGAGAATTCGTACCAGTaGCTATGTGGTAACAACTTT +
Preference number: 2 (lower is better)
Translates to: QQWGSNFNMRFAGVKQTTENSYQ*LCGNNF
Trigger: AAAGTTGTTACCACATAGGCACTGGTACGAATTCTC...TGTGGTTTGTTTGACCCCTGCAAATCTCATGTTGAAATTTGATCCCCATTGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR GCA 90 bp GTTATAGCAGCCCAAACGGACTTAAATACATACTCTCTCTACAACTCAGCTTTCGAGAATTCGTACCAGTaGCAACGTAGTTACAGTTCT +
Preference number: 2 (lower is better)
Translates to: VIAAQTDLNTYSLYNSAFENSYQ*QRSYSS
Trigger: AGAACTGTAACTACGTTGGCACTGGTACGAATTCTC...GAAAGCTGAGTTGTAGAGAGAGTATGTATTTAAGTCCGTTTGGGCTGCTATAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR GCA 90 bp GTTATAGCAGCCCAAACGGACTTAAATACATACTCTCTCTACAACTCAGCTTTCCAGCAGTTAGCATGTTaGCTGGCACAGAATAAGAAT +
Preference number: 2 (lower is better)
Translates to: VIAAQTDLNTYSLYNSAFQQLAC*LAQNKN
Trigger: ATTCTTATTCTGTGCCAGGCAACATGCTAACTGCTG...GAAAGCTGAGTTGTAGAGAGAGTATGTATTTAAGTCCGTTTGGGCTGCTATAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR GCA 90 bp CAGCAATGGGGATCAAATTTCAACATGAGATTTGCAGGGGTCAAACAAACCACAAGCAAAGTTGCTTCCTaGTATGGTTTGAATGCTACA +
Preference number: 2 (lower is better)
Translates to: QQWGSNFNMRFAGVKQTTSKVAS*YGLNAT
Trigger: TGTAGCATTCAAACCATAGCAGGAAGCAACTTTGCT...TGTGGTTTGTTTGACCCCTGCAAATCTCATGTTGAAATTTGATCCCCATTGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR GCA 90 bp CAGCAATGGGGATCAAATTTCAACATGAGATTTGCAGGGGTCAAACAAACCACAAGAATAGATAGCAAGTaGACAAGGTTGGAGACAAAG +
Preference number: 2 (lower is better)
Translates to: QQWGSNFNMRFAGVKQTTRIDSK*TRLETK
Trigger: CTTTGTCTCCAACCTTGTGCACTTGCTATCTATTCT...TGTGGTTTGTTTGACCCCTGCAAATCTCATGTTGAAATTTGATCCCCATTGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR TCA 90 bp AGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATATGCAGAATGAAGAAAAAGAAACACTGCAGTTaGCTGTTTCATTGCATTCTC +
Preference number: 2 (lower is better)
Translates to: SPLVLGRNPRERICRMKKKKHCS*LFHCIL
Trigger: GAGAATGCAATGAAACAGTCAACTGCAGTGTTTCTT...TTTCTTCATTCTGCATATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR CCA 90 bp TGGATTGTGAGAGACAGGCCAGTAGGCAGGCAAATATATAGCTCTAAAGTAAAGGCTGTCTCAATAGTGTaGGTCTTTGTACATTCAAAA +
Preference number: 2 (lower is better)
Translates to: WIVRDRPVGRQIYSSKVKAVSIV*VFVHSK
Trigger: TTTTGAATGTACAAAGACCCACACTATTGAGACAGC...CTTTACTTTAGAGCTATATATTTGCCTGCCTACTGGCCTGTCTCTCACAATCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR CCA 90 bp CAGCAATGGGGATCAAATTTCAACATGAGATTTGCAGGGGTCAAACAAACCACAGCTGTCTCAATAGTGTaGGTCTTTGTACATTCAAAA +
Preference number: 2 (lower is better)
Translates to: QQWGSNFNMRFAGVKQTTAVSIV*VFVHSK
Trigger: TTTTGAATGTACAAAGACCCACACTATTGAGACAGC...TGTGGTTTGTTTGACCCCTGCAAATCTCATGTTGAAATTTGATCCCCATTGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR CCA 90 bp CAGCAATGGGGATCAAATTTCAACATGAGATTTGCAGGGGTCAAACAAACCACAGTTAAAAATTACAAATaGCTGGCCTACGATGTTCCT +
Preference number: 2 (lower is better)
Translates to: QQWGSNFNMRFAGVKQTTVKNYK*LAYDVP
Trigger: AGGAACATCGTAGGCCAGCCATTTGTAATTTTTAAC...TGTGGTTTGTTTGACCCCTGCAAATCTCATGTTGAAATTTGATCCCCATTGCTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR CCA 90 bp TCCAGAACTGTGAGCCAAATAAATTTTTGTTCATCACGTTACCCAGTCTGTGGTGAAACAGATCAAAGCTaGAGATCTGAGATTCAGAGA +
Preference number: 2 (lower is better)
Translates to: SRTVSQINFCSSRYPVCGETDQS*RSEIQR
Trigger: TCTCTGAATCTCAGATCTCCAGCTTTGATCTGTTTC...ACCACAGACTGGGTAACGTGATGAACAAAAATTTATTTGGCTCACAGTTCTGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR CCA 90 bp TGGATTGTGAGAGACAGGCCAGTAGGCAGGCAAATATATAGCTCTAAAGTAAAGACTGAGAGTTTTCACTaGATTTGGCAACAAAGTATT +
Preference number: 2 (lower is better)
Translates to: WIVRDRPVGRQIYSSKVKTESFH*IWQQSI
Trigger: AATACTTTGTTGCCAAATCCAGTGAAAACTCTCAGT...CTTTACTTTAGAGCTATATATTTGCCTGCCTACTGGCCTGTCTCTCACAATCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR CCA 90 bp TCCAGAACTGTGAGCCAAATAAATTTTTGTTCATCACGTTACCCAGTCTGTGGTACTGAGAGTTTTCACTaGATTTGGCAACAAAGTATT +
Preference number: 2 (lower is better)
Translates to: SRTVSQINFCSSRYPVCGTESFH*IWQQSI
Trigger: AATACTTTGTTGCCAAATCCAGTGAAAACTCTCAGT...ACCACAGACTGGGTAACGTGATGAACAAAAATTTATTTGGCTCACAGTTCTGGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR CAA 90 bp AGTGCCCCCAATGTCTATGTGAGTGGGAGCGTATCTCAGGCAGAGGAAAAGCTCAACACTTACAGGACGTaGAGAGCAAGAGGCCAGAGA +
Preference number: 3 (lower is better)
Translates to: SAPNVYVSGSVSQAEEKLNTYRT*RARGQR
Trigger: TCTCTGGCCTCTTGCTCTCAACGTCCTGTAAGTGTT...GAGCTTTTCCTCTGCCTGAGATACGCTCCCACTCACATAGACATTGGGGGCACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR CAA 90 bp CTAAGTTCTGGCTTGGCTCAGGTGCCTGCTATCCCTATGACCCTGTGTCTTAGCATCTCTTGCTCACTCTaGCCCTCTCTTACCCTTCTG +
Preference number: 3 (lower is better)
Translates to: LSSGLAQVPAIPMTLCLSISCSL*PSLTLL
Trigger: CAGAAGGGTAAGAGAGGGCAAGAGTGAGCAAGAGAT...GCTAAGACACAGGGTCATAGGGATAGCAGGCACCTGAGCCAAGCCAGAACTTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR GCA 72 bp GGACAACGCCAAGACATTCATGAGGGATCCGCTCCATaGTCAAAACACCTCCAGCAATGGGGATCAAATTTC +
Preference number: 3 (lower is better)
Translates to: GQRQDIHEGSAP*SKHLQQWGSNF
Trigger: GAAATTTGATCCCCATTGCTGGAGGTGTTTTGAGCATGGAGCGGATCCCTCATGAATGTCTTGGCGTTGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR CCA 72 bp AAAGGGCATGGTCAGAGAACTGAAAGGAGTTCCATATaGCTACAGCACAATGATGGCGGGAAGACGGAGAGA +
Preference number: 3 (lower is better)
Translates to: KGHGQRTERSSI*LQHNDGGKTER
Trigger: TCTCTCCGTCTTCCCGCCATCATTGTGCTGTAGCCATATGGAACTCCTTTCAGTTCTCTGACCATGCCCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR CAA 90 bp CTAAGTTCTGGCTTGGCTCAGGTGCCTGCTATCCCTATGACCCTGTGTCTTAGCGAGCCAAATAAATTTTaGTTCATCACGTTACCCAGT +
Preference number: 3 (lower is better)
Translates to: LSSGLAQVPAIPMTLCLSEPNKF*FITLPS
Trigger: ACTGGGTAACGTGATGAACAAAAATTTATTTGGCTC...GCTAAGACACAGGGTCATAGGGATAGCAGGCACCTGAGCCAAGCCAGAACTTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR GCA 72 bp TTCCAGGGGAGGAAAAATAGAGCAAGAACTCATTACTaGAAGGACAACGCCAAGACATTCATGAGGGATCCG +
Preference number: 3 (lower is better)
Translates to: FQGRKNRARTHY*KDNAKTFMRDP
Trigger: CGGATCCCTCATGAATGTCTTGGCGTTGTCCTTGCAGTAATGAGTTCTTGCTCTATTTTTCCTCCCCTGGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR CAA 90 bp GGCATGGTCAGAGAACTGAAAGGAGTTCCATATGGCTACAGCACAATGATGGCGACTATAAATATCCAGTaGAAGGCACGTGGAAGCATT +
Preference number: 3 (lower is better)
Translates to: GMVRELKGVPYGYSTMMATINIQ*KARGSI
Trigger: AATGCTTCCACGTGCCTTCAACTGGATATTTATAGT...CGCCATCATTGTGCTGTAGCCATATGGAACTCCTTTCAGTTCTCTGACCATGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR CAA 90 bp GTTATAGCAGCCCAAACGGACTTAAATACATACTCTCTCTACAACTCAGCTTTCCTTCAGATGGGGAGTTaGGGAAGGCATCTCTCTGAG +
Preference number: 3 (lower is better)
Translates to: VIAAQTDLNTYSLYNSAFLQMGS*GRHLSE
Trigger: CTCAGAGAGATGCCTTCCCAAACTCCCCATCTGAAG...GAAAGCTGAGTTGTAGAGAGAGTATGTATTTAAGTCCGTTTGGGCTGCTATAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR CAA 90 bp TGGATTGTGAGAGACAGGCCAGTAGGCAGGCAAATATATAGCTCTAAAGTAAAGAACACTTACAGGACGTaGAGAGCAAGAGGCCAGAGA +
Preference number: 3 (lower is better)
Translates to: WIVRDRPVGRQIYSSKVKNTYRT*RARGQR
Trigger: TCTCTGGCCTCTTGCTCTCAACGTCCTGTAAGTGTT...CTTTACTTTAGAGCTATATATTTGCCTGCCTACTGGCCTGTCTCTCACAATCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR CAA 90 bp AGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATATGCAGAATGAAGAAAGAGTTTATAGGTGACTaGCCCAAGACTACAGACCTG +
Preference number: 3 (lower is better)
Translates to: SPLVLGRNPRERICRMKKEFIGD*PKTTDL
Trigger: CAGGTCTGTAGTCTTGGGCAAGTCACCTATAAACTC...TTTCTTCATTCTGCATATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR CAA 90 bp TCTGCCGTCAAAGATTCTCCACTTAGTTCAGGATCAGGAATAGAATCAGCTCCATCTGTAGCTGGTATTTaGTCATCTGTCTGCTCTGTA +
Preference number: 3 (lower is better)
Translates to: SAVKDSPLSSGSGIESAPSVAGI*SSVCSV
Trigger: TACAGAGCAGACAGATGACAAAATACCAGCTACAGA...TGGAGCTGATTCTATTCCTGATCCTGAACTAAGTGGAGAATCTTTGACGGCAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000431754.1
3UTR TCA 72 bp TTCATGGTTCAATACAAATCATCCTGCATTAACAGTTaGGATCTAAGTTCTGGCTTGGCTCAGGTGCCTGCT +
Preference number: 3 (lower is better)
Translates to: FMVQYKSSCINS*DLSSGLAQVPA
Trigger: AGCAGGCACCTGAGCCAAGCCAGAACTTAGATCTCAACTGTTAATGCAGGATGATTTGTATTGAACCATGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR CAA 90 bp CAGCAATGGGGATCAAATTTCAACATGAGATTTGCAGGGGTCAAACAAACCACAGCTTCCTGCTATGGTTaGAATGCTACAAAAAGCATG +
Preference number: 3 (lower is better)
Translates to: QQWGSNFNMRFAGVKQTTASCYG*NATKSM
Trigger: CATGCTTTTTGTAGCATTCAAACCATAGCAGGAAGC...TGTGGTTTGTTTGACCCCTGCAAATCTCATGTTGAAATTTGATCCCCATTGCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR TCA 72 bp ACACACGCACATCCACACCCAAAGCTATACCTCTTCTaGTACAACTATGTTCTCCATAACAATAGTGACTGT +
Preference number: 3 (lower is better)
Translates to: THAHPHPKLYLF*YNYVLHNNSDC
Trigger: ACAGTCACTATTGTTATGGAGAACATAGTTGTATCAGAAGAGGTATAGCTTTGGGTGTGGATGTGCGTGTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR CAA 90 bp GAGAGACAGATGGTAAGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATAAGAAGGCAATCATGTTaGCTTACTTTTAGAATGGAC +
Preference number: 3 (lower is better)
Translates to: ERQMVSPLVLGRNPRERIRRQSC*LTFRMD
Trigger: GTCCATTCTAAAAGTAAGCAAACATGATTGCCTTCT...TATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACTTACCATCTGTCTCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR CAA 90 bp TCCAGAACTGTGAGCCAAATAAATTTTTGTTCATCACGTTACCCAGTCTGTGGTACTATAAATATCCAGTaGAAGGCACGTGGAAGCATT +
Preference number: 3 (lower is better)
Translates to: SRTVSQINFCSSRYPVCGTINIQ*KARGSI
Trigger: AATGCTTCCACGTGCCTTCAACTGGATATTTATAGT...ACCACAGACTGGGTAACGTGATGAACAAAAATTTATTTGGCTCACAGTTCTGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR TCA 72 bp AGAAACCAGTTAAGAGACAGCTTTGGTAATCTGAAATaGTGGAGGCCAAGATTAGAAGGCAGTACAACAGAA +
Preference number: 3 (lower is better)
Translates to: RNQLRDSFGNLK*WRPRLEGSTTE
Trigger: TTCTGTTGTACTGCCTTCTAATCTTGGCCTCCATCATTTCAGATTACCAAAGCTGTCTCTTAACTGGTTTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR-3UTR CAA 90 bp TCCAGAACTGTGAGCCAAATAAATTTTTGTTCATCACGTTACCCAGTCTGTGGTAGAAGGCAATCATGTTaGCTTACTTTTAGAATGGAC +
Preference number: 3 (lower is better)
Translates to: SRTVSQINFCSSRYPVCGRRQSC*LTFRMD
Trigger: GTCCATTCTAAAAGTAAGCAAACATGATTGCCTTCT...ACCACAGACTGGGTAACGTGATGAACAAAAATTTATTTGGCTCACAGTTCTGGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR TCA 72 bp TCCTGCTATGGTTTGAATGCTACAAAAAGCATGTGTTaGAAACTTATGCTAACTGTTGCATTGGAAGGTGGA +
Preference number: 3 (lower is better)
Translates to: SCYGLNATKSMC*KLMLTVALEGG
Trigger: TCCACCTTCCAATGCAACAGTTAGCATAAGTTTTCAACACATGCTTTTTGTAGCATTCAAACCATAGCAGGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR GCA 72 bp TACAAAAAGCATGTGTTGAAAACTTATGCTAACTGTTaGATTGGAAGGTGGAGCCTAATGGAGATGTTTAGG +
Preference number: 3 (lower is better)
Translates to: YKKHVLKTYANC*IGRWSLMEMFR
Trigger: CCTAAACATCTCCATTAGGCTCCACCTTCCAATGCAACAGTTAGCATAAGTTTTCAACACATGCTTTTTGTA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR GCA 72 bp ACTGGATTTGGCAACAAAGTATTTATTCACACAATATaGATCAAGCATTGTGCTAGACCCTTGAGATACAGA +
Preference number: 3 (lower is better)
Translates to: TGFGNKVFIHTI*IKHCARPLRYR
Trigger: TCTGTATCTCAAGGGTCTAGCACAATGCTTGATGCATATTGTGTGAATAAATACTTTGTTGCCAAATCCAGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR TCA 72 bp TTTGCTCTAAGCAGAATCTACAGATTTATTGTATTGTaGGCTATTCCTCCTAAGATTTTTCAGGTAGCCAAG +
Preference number: 3 (lower is better)
Translates to: FALSRIYRFIVL*AIPPKIFQVAK
Trigger: CTTGGCTACCTGAAAAATCTTAGGAGGAATAGCTCACAATACAATAAATCTGTAGATTCTGCTTAGAGCAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR TCA 72 bp GCCTACGATGTTCCTGAATCAGAAAAACCTAACTTCTaGTTAAAACCTCTAAATGTCACTATTTCTGTTAAC +
Preference number: 3 (lower is better)
Translates to: AYDVPESEKPNF*LKPLNVTISVN
Trigger: GTTAACAGAAATAGTGACATTTAGAGGTTTTAATCAGAAGTTAGGTTTTTCTGATTCAGGAACATCGTAGGC
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR GCA 72 bp ACAACAGAAATTAAGAGTAAATCCTCTGAAGTCATTTaGCTATATTCAAATCCCTCTTTTTCCACTTACCAG +
Preference number: 3 (lower is better)
Translates to: TTEIKSKSSEVI*LYSNPSFSTYQ
Trigger: CTGGTAAGTGGAAAAAGAGGGATTTGAATATAGGCAAATGACTTCAGAGGATTTACTCTTAATTTCTGTTGT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp TCTGAGGAGGCAAAATTTAAGCTGAAATCTGAGGCAGGAAAGGGCATGGTCAGAACTCCTGACCCCAGATaGTCTGCCCGCCTCAGCCTC +
Preference number: 4 (lower is better)
Translates to: SEEAKFKLKSEAGKGMVRTPDPR*SARLSL
Trigger: GAGGCTGAGGCGGGCAGATCATCTGGGGTCAGGAGT...TCTGACCATGCCCTTTCCTGCCTCAGATTTCAGCTTAAATTTTGCCTCCTCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp AGTGCCCCCAATGTCTATGTGAGTGGGAGCGTATCTCAGGCAGAGGAAAAGCTCGGCAGAACTGTCCTTTaGTGGTCCAGGAGATACTGG +
Preference number: 4 (lower is better)
Translates to: SAPNVYVSGSVSQAEEKLGRTVL*WSRRYW
Trigger: CCAGTATCTCCTGGACCACCAAAGGACAGTTCTGCC...GAGCTTTTCCTCTGCCTGAGATACGCTCCCACTCACATAGACATTGGGGGCACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp TCTGAGGAGGCAAAATTTAAGCTGAAATCTGAGGCAGGAAAGGGCATGGTCAGACTGGTCTCGAACTCCTaGCCCCAGATGATCTGCCCG +
Preference number: 4 (lower is better)
Translates to: SEEAKFKLKSEAGKGMVRLVSNS*PQMICP
Trigger: CGGGCAGATCATCTGGGGTCAGGAGTTCGAGACCAG...TCTGACCATGCCCTTTCCTGCCTCAGATTTCAGCTTAAATTTTGCCTCCTCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp AGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATATGCAGAATGAAGAAAGGCAGCAGCCGCCACTaGCAGAGAGACAAGCCGGGC +
Preference number: 4 (lower is better)
Translates to: SPLVLGRNPRERICRMKKGSSRH*QRDKPG
Trigger: GCCCGGCTTGTCTCTCTGTCAGTGGCGGCTGCTGCC...TTTCTTCATTCTGCATATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000544803.5
CDS-3UTR GCA 90 bp CTAAGTTCTGGCTTGGCTCAGGTGCCTGCTATCCCTATGACCCTGTGTCTTAGCTTCAAGCAATTCTCCTaGCTCAGGCTCCTGAGTAGC +
Preference number: 4 (lower is better)
Translates to: LSSGLAQVPAIPMTLCLSFKQFS*LRLLSS
Trigger: GCTACTCAGGAGCCTGAGGCAGGAGAATTGCTTGAA...GCTAAGACACAGGGTCATAGGGATAGCAGGCACCTGAGCCAAGCCAGAACTTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp AGTGCCCCCAATGTCTATGTGAGTGGGAGCGTATCTCAGGCAGAGGAAAAGCTCAGCCACCACCACACCTaGCCCCTCATTTTCTGTTTT +
Preference number: 4 (lower is better)
Translates to: SAPNVYVSGSVSQAEEKLSHHHT*PLIFCF
Trigger: AAAACAGAAAATGAGGGGCCAGGTGTGGTGGTGGCT...GAGCTTTTCCTCTGCCTGAGATACGCTCCCACTCACATAGACATTGGGGGCACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp GCTATTCCTCCTAAGATTTTTCAGGTAGCCAAGTCACCCACCAAGATACTGTTTACTCCTGACCCCAGATaGTCTGCCCGCCTCAGCCTC +
Preference number: 4 (lower is better)
Translates to: AIPPKIFQVAKSPTKILFTPDPR*SARLSL
Trigger: GAGGCTGAGGCGGGCAGATCATCTGGGGTCAGGAGT...AAACAGTATCTTGGTGGGTGACTTGGCTACCTGAAAAATCTTAGGAGGAATAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp CTAAGTTCTGGCTTGGCTCAGGTGCCTGCTATCCCTATGACCCTGTGTCTTAGCCTGGTTAGGGCTTGCTaGTGTTGGAGAAAGGTTTCT +
Preference number: 4 (lower is better)
Translates to: LSSGLAQVPAIPMTLCLSLVRAC*CWRKVS
Trigger: AGAAACCTTTCTCCAACACCAGCAAGCCCTAACCAG...GCTAAGACACAGGGTCATAGGGATAGCAGGCACCTGAGCCAAGCCAGAACTTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp AGTGCCCCCAATGTCTATGTGAGTGGGAGCGTATCTCAGGCAGAGGAAAAGCTCAGAACTGTCCTTTGGTaGTCCAGGAGATACTGGAAC +
Preference number: 4 (lower is better)
Translates to: SAPNVYVSGSVSQAEEKLRTVLW*SRRYWN
Trigger: GTTCCAGTATCTCCTGGACCACCAAAGGACAGTTCT...GAGCTTTTCCTCTGCCTGAGATACGCTCCCACTCACATAGACATTGGGGGCACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp AGTGCCCCCAATGTCTATGTGAGTGGGAGCGTATCTCAGGCAGAGGAAAAGCTCCCAGTTGAAGGCACGTaGAAGCATTTACTACTCTGC +
Preference number: 4 (lower is better)
Translates to: SAPNVYVSGSVSQAEEKLPVEGT*KHLLLC
Trigger: GCAGAGTAGTAAATGCTTCCACGTGCCTTCAACTGG...GAGCTTTTCCTCTGCCTGAGATACGCTCCCACTCACATAGACATTGGGGGCACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp AGTGCCCCCAATGTCTATGTGAGTGGGAGCGTATCTCAGGCAGAGGAAAAGCTCGTTGGTTTCAATCACTaGGGCTTCCTCATTCTCAGT +
Preference number: 4 (lower is better)
Translates to: SAPNVYVSGSVSQAEEKLVGFNH*GFLILS
Trigger: ACTGAGAATGAGGAAGCCTCAGTGATTGAAACCAAC...GAGCTTTTCCTCTGCCTGAGATACGCTCCCACTCACATAGACATTGGGGGCACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp AGTGCCCCCAATGTCTATGTGAGTGGGAGCGTATCTCAGGCAGAGGAAAAGCTCCCAAGACTACAGACCTaGAATTTAAGCCCAATACGG +
Preference number: 4 (lower is better)
Translates to: SAPNVYVSGSVSQAEEKLPRLQT*NLSPIR
Trigger: CCGTATTGGGCTTAAATTTCAGGTCTGTAGTCTTGG...GAGCTTTTCCTCTGCCTGAGATACGCTCCCACTCACATAGACATTGGGGGCACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp CAGCAATGGGGATCAAATTTCAACATGAGATTTGCAGGGGTCAAACAAACCACACTGGTCTCGAACTCCTaGCCCCAGATGATCTGCCCG +
Preference number: 4 (lower is better)
Translates to: QQWGSNFNMRFAGVKQTTLVSNS*PQMICP
Trigger: CGGGCAGATCATCTGGGGTCAGGAGTTCGAGACCAG...TGTGGTTTGTTTGACCCCTGCAAATCTCATGTTGAAATTTGATCCCCATTGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp CCCAAGACTACAGACCTGAAATTTAAGCCCAATACGGCAGGCTCAAAAACTCTGAAAGGAATTCACAGCTaGAAGAAGCGGGCGCAGCCC +
Preference number: 4 (lower is better)
Translates to: PKTTDLKFKPNTAGSKTLKGIHS*KKRAQP
Trigger: GGGCTGCGCCCGCTTCTTGCAGCTGTGAATTCCTTT...CAGAGTTTTTGAGCCTGCCGTATTGGGCTTAAATTTCAGGTCTGTAGTCTTGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp CACTTCCTGATGGCAAGGGACCAACTGAACTTGAACCTTCCACCACCTGCCTCTGAACCTTCCACCACCTaGCTCTTCTCAAAACTAAAC +
Preference number: 4 (lower is better)
Translates to: HFLMARDQLNLNLPPPASEPSTT*LFSKLN
Trigger: GTTTAGTTTTGAGAAGAGGCAGGTGGTGGAAGGTTC...AGAGGCAGGTGGTGGAAGGTTCAAGTTCAGTTGGTCCCTTGCCATCAGGAAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000431754.1
CDS-3UTR GCA 90 bp TCTGAGGAGGCAAAATTTAAGCTGAAATCTGAGGCAGGAAAGGGCATGGTCAGACTTGGCTCAGGTGCCTaGTATCCCTATGACCCTGTG +
Preference number: 4 (lower is better)
Translates to: SEEAKFKLKSEAGKGMVRLGSGA*YPYDPV
Trigger: CACAGGGTCATAGGGATAGCAGGCACCTGAGCCAAG...TCTGACCATGCCCTTTCCTGCCTCAGATTTCAGCTTAAATTTTGCCTCCTCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp CCCAAGACTACAGACCTGAAATTTAAGCCCAATACGGCAGGCTCAAAAACTCTGAGTAACAGTCCTTTCTaGGGGTCCACCAGGGGCAGA +
Preference number: 4 (lower is better)
Translates to: PKTTDLKFKPNTAGSKTLSNSPF*GSTRGR
Trigger: TCTGCCCCTGGTGGACCCCCAGAAAGGACTGTTACT...CAGAGTTTTTGAGCCTGCCGTATTGGGCTTAAATTTCAGGTCTGTAGTCTTGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp CACTTCCTGATGGCAAGGGACCAACTGAACTTGAACCTTCCACCACCTGCCTCTCAGGAACTGTGGAGTTaGTTTCAATCACTGAGGCTT +
Preference number: 4 (lower is better)
Translates to: HFLMARDQLNLNLPPPASQELWS*FQSLRL
Trigger: AAGCCTCAGTGATTGAAACCAACTCCACAGTTCCTG...AGAGGCAGGTGGTGGAAGGTTCAAGTTCAGTTGGTCCCTTGCCATCAGGAAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000431754.1
CDS-3UTR CCA 90 bp CTAAGTTCTGGCTTGGCTCAGGTGCCTGCTATCCCTATGACCCTGTGTCTTAGCGAAAGGAGTTCCATATaGCTACAGCACAATGATGGC +
Preference number: 4 (lower is better)
Translates to: LSSGLAQVPAIPMTLCLSERSSI*LQHNDG
Trigger: GCCATCATTGTGCTGTAGCCATATGGAACTCCTTTC...GCTAAGACACAGGGTCATAGGGATAGCAGGCACCTGAGCCAAGCCAGAACTTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp AGTGCCCCCAATGTCTATGTGAGTGGGAGCGTATCTCAGGCAGAGGAAAAGCTCACGTTACCCAGTCTGTaGTATTCTGTTATAGCAGCC +
Preference number: 4 (lower is better)
Translates to: SAPNVYVSGSVSQAEEKLTLPSL*YSVIAA
Trigger: GGCTGCTATAACAGAATACCACAGACTGGGTAACGT...GAGCTTTTCCTCTGCCTGAGATACGCTCCCACTCACATAGACATTGGGGGCACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp GGCATGGTCAGAGAACTGAAAGGAGTTCCATATGGCTACAGCACAATGATGGCGTTGAGATCTAAGTTCTaGCTTGGCTCAGGTGCCTGC +
Preference number: 4 (lower is better)
Translates to: GMVRELKGVPYGYSTMMALRSKF*LGSGAC
Trigger: GCAGGCACCTGAGCCAAGCCAGAACTTAGATCTCAA...CGCCATCATTGTGCTGTAGCCATATGGAACTCCTTTCAGTTCTCTGACCATGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp CAGCAATGGGGATCAAATTTCAACATGAGATTTGCAGGGGTCAAACAAACCACAGGTGGACCTGGAGGATaGAGACCCATTCCAGGCACT +
Preference number: 4 (lower is better)
Translates to: QQWGSNFNMRFAGVKQTTGGPGG*RPIPGT
Trigger: AGTGCCTGGAATGGGTCTTCATCCTCCAGGTCCACC...TGTGGTTTGTTTGACCCCTGCAAATCTCATGTTGAAATTTGATCCCCATTGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000272748.9
CDS-3UTR TCA 90 bp AAAGATTCTCCACTTAGTTCAGGATCAGGAATAGAATCAGCTCCAGGAACTGTGGGTGGACCTGGAGGATaGAGACCCATTCCAGGCACT +
Preference number: 4 (lower is better)
Translates to: KDSPLSSGSGIESAPGTVGGPGG*RPIPGT
Trigger: AGTGCCTGGAATGGGTCTTCATCCTCCAGGTCCACC...CACAGTTCCTGGAGCTGATTCTATTCCTGATCCTGAACTAAGTGGAGAATCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000431754.1
CDS-3UTR TCA 90 bp GAGAGACAGATGGTAAGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATACCTTCTGGCATGGGATaGCAAAGCACAAAGGCCCTC +
Preference number: 4 (lower is better)
Translates to: ERQMVSPLVLGRNPRERIPSGMG*QSTKAL
Trigger: GAGGGCCTTTGTGCTTTGTCATCCCATGCCAGAAGG...TATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACTTACCATCTGTCTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp TTAAGCCCAATACGGCAGGCTCAAAAACTCTGGTTACTATACCGGATGTCCCAGGTAATCCCAGCACTTTaGGAGGTCGAGGTAGACAGA +
Preference number: 4 (lower is better)
Translates to: LSPIRQAQKLWLLYRMSQVIPAL*EVEVDR
Trigger: TCTGTCTACCTCGACCTCTCAAAGTGCTGGGATTAC...CTGGGACATCCGGTATAGTAACCAGAGTTTTTGAGCCTGCCGTATTGGGCTTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000544803.5
CDS-3UTR TCA 90 bp GAGAGACAGATGGTAAGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATAGGTGGACCTGGAGGATaGAGACCTGTAATCCCAGCA +
Preference number: 4 (lower is better)
Translates to: ERQMVSPLVLGRNPRERIGGPGG*RPVIPA
Trigger: TGCTGGGATTACAGGTCTTCATCCTCCAGGTCCACC...TATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACTTACCATCTGTCTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000544803.5
CDS-3UTR GCA 90 bp AGTGCCCCCAATGTCTATGTGAGTGGGAGCGTATCTCAGGCAGAGGAAAAGCTCCTGCTGACATATAAGTaGATACCTGTTTTGTGGACC +
Preference number: 4 (lower is better)
Translates to: SAPNVYVSGSVSQAEEKLLLTYK*IPVLWT
Trigger: GGTCCACAAAACAGGTATGCACTTATATGTCAGCAG...GAGCTTTTCCTCTGCCTGAGATACGCTCCCACTCACATAGACATTGGGGGCACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp TCTGAGGAGGCAAAATTTAAGCTGAAATCTGAGGCAGGAAAGGGCATGGTCAGACCTCTCTTACCCTTCTaGCTTCTGGCATGGGATGAC +
Preference number: 4 (lower is better)
Translates to: SEEAKFKLKSEAGKGMVRPLLPF*LLAWDD
Trigger: GTCATCCCATGCCAGAAGGCAGAAGGGTAAGAGAGG...TCTGACCATGCCCTTTCCTGCCTCAGATTTCAGCTTAAATTTTGCCTCCTCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp GAGAGACAGATGGTAAGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATACTTGGCTCAGGTGCCTaGTATCCCTATGACCCTGTG +
Preference number: 4 (lower is better)
Translates to: ERQMVSPLVLGRNPRERILGSGA*YPYDPV
Trigger: CACAGGGTCATAGGGATAGCAGGCACCTGAGCCAAG...TATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACTTACCATCTGTCTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp GGCATGGTCAGAGAACTGAAAGGAGTTCCATATGGCTACAGCACAATGATGGCGCTGGTTAGGGCTTGCTaGTGTTGGAGAAAGGTTTCT +
Preference number: 4 (lower is better)
Translates to: GMVRELKGVPYGYSTMMALVRAC*CWRKVS
Trigger: AGAAACCTTTCTCCAACACCAGCAAGCCCTAACCAG...CGCCATCATTGTGCTGTAGCCATATGGAACTCCTTTCAGTTCTCTGACCATGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp GGCATGGTCAGAGAACTGAAAGGAGTTCCATATGGCTACAGCACAATGATGGCGCCAGTTGAAGGCACGTaGAAGCATTTACTACTCTGC +
Preference number: 4 (lower is better)
Translates to: GMVRELKGVPYGYSTMMAPVEGT*KHLLLC
Trigger: GCAGAGTAGTAAATGCTTCCACGTGCCTTCAACTGG...CGCCATCATTGTGCTGTAGCCATATGGAACTCCTTTCAGTTCTCTGACCATGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp TTAAGCCCAATACGGCAGGCTCAAAAACTCTGGTTACTATACCGGATGTCCCAGTTCAGATGGGGAGTTTaGGAAGGCATCTCTCTGAGG +
Preference number: 4 (lower is better)
Translates to: LSPIRQAQKLWLLYRMSQFRWGV*EGISLR
Trigger: CCTCAGAGAGATGCCTTCCCAAACTCCCCATCTGAA...CTGGGACATCCGGTATAGTAACCAGAGTTTTTGAGCCTGCCGTATTGGGCTTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp TTAAGCCCAATACGGCAGGCTCAAAAACTCTGGTTACTATACCGGATGTCCCAGTACCCTTCTGCCTTCTaGCATGGGATGACAAAGCAC +
Preference number: 4 (lower is better)
Translates to: LSPIRQAQKLWLLYRMSQYPSAF*HGMTKH
Trigger: GTGCTTTGTCATCCCATGCCAGAAGGCAGAAGGGTA...CTGGGACATCCGGTATAGTAACCAGAGTTTTTGAGCCTGCCGTATTGGGCTTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp AGTGCCCCCAATGTCTATGTGAGTGGGAGCGTATCTCAGGCAGAGGAAAAGCTCAAGAAACACTGCAGTTaGCTGTTTCATTGCATTCTC +
Preference number: 4 (lower is better)
Translates to: SAPNVYVSGSVSQAEEKLKKHCS*LFHCIL
Trigger: GAGAATGCAATGAAACAGTCAACTGCAGTGTTTCTT...GAGCTTTTCCTCTGCCTGAGATACGCTCCCACTCACATAGACATTGGGGGCACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp GCTATTCCTCCTAAGATTTTTCAGGTAGCCAAGTCACCCACCAAGATACTGTTTCCTTCTGGCATGGGATaGCAAAGCACAAAGGCCCTC +
Preference number: 4 (lower is better)
Translates to: AIPPKIFQVAKSPTKILFPSGMG*QSTKAL
Trigger: GAGGGCCTTTGTGCTTTGTCATCCCATGCCAGAAGG...AAACAGTATCTTGGTGGGTGACTTGGCTACCTGAAAAATCTTAGGAGGAATAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp TGGATTGTGAGAGACAGGCCAGTAGGCAGGCAAATATATAGCTCTAAAGTAAAGAAAGGAATTCACAGCTaGAAGAAGCGGGCGCAGCCC +
Preference number: 4 (lower is better)
Translates to: WIVRDRPVGRQIYSSKVKKGIHS*KKRAQP
Trigger: GGGCTGCGCCCGCTTCTTGCAGCTGTGAATTCCTTT...CTTTACTTTAGAGCTATATATTTGCCTGCCTACTGGCCTGTCTCTCACAATCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp AGTGCCCCCAATGTCTATGTGAGTGGGAGCGTATCTCAGGCAGAGGAAAAGCTCGAGAATTCGTACCAGTaGCTATGTGGTAACAACTTT +
Preference number: 4 (lower is better)
Translates to: SAPNVYVSGSVSQAEEKLENSYQ*LCGNNF
Trigger: AAAGTTGTTACCACATAGGCACTGGTACGAATTCTC...GAGCTTTTCCTCTGCCTGAGATACGCTCCCACTCACATAGACATTGGGGGCACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp AGTGCCCCCAATGTCTATGTGAGTGGGAGCGTATCTCAGGCAGAGGAAAAGCTCAGCAAAGTTGCTTCCTaGTATGGTTTGAATGCTACA +
Preference number: 4 (lower is better)
Translates to: SAPNVYVSGSVSQAEEKLSKVAS*YGLNAT
Trigger: TGTAGCATTCAAACCATAGCAGGAAGCAACTTTGCT...GAGCTTTTCCTCTGCCTGAGATACGCTCCCACTCACATAGACATTGGGGGCACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp GAGAGACAGATGGTAAGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATAGGCAGAACTGTCCTTTaGTGGTCCAGGAGATACTGG +
Preference number: 4 (lower is better)
Translates to: ERQMVSPLVLGRNPRERIGRTVL*WSRRYW
Trigger: CCAGTATCTCCTGGACCACCAAAGGACAGTTCTGCC...TATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACTTACCATCTGTCTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp CAGCAATGGGGATCAAATTTCAACATGAGATTTGCAGGGGTCAAACAAACCACAAGTAACAGTCCTTTCTaGGGGTCCACCAGGGGCAGA +
Preference number: 4 (lower is better)
Translates to: QQWGSNFNMRFAGVKQTTSNSPF*GSTRGR
Trigger: TCTGCCCCTGGTGGACCCCCAGAAAGGACTGTTACT...TGTGGTTTGTTTGACCCCTGCAAATCTCATGTTGAAATTTGATCCCCATTGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp GGCATGGTCAGAGAACTGAAAGGAGTTCCATATGGCTACAGCACAATGATGGCGCAGGAACTGTGGAGTTaGTTTCAATCACTGAGGCTT +
Preference number: 4 (lower is better)
Translates to: GMVRELKGVPYGYSTMMAQELWS*FQSLRL
Trigger: AAGCCTCAGTGATTGAAACCAACTCCACAGTTCCTG...CGCCATCATTGTGCTGTAGCCATATGGAACTCCTTTCAGTTCTCTGACCATGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp TCCAGAACTGTGAGCCAAATAAATTTTTGTTCATCACGTTACCCAGTCTGTGGTGTGCCAGCCTCTGCTTaGCTTCTGGTGAGAGCCTCA +
Preference number: 4 (lower is better)
Translates to: SRTVSQINFCSSRYPVCGVPASA*LLVRAS
Trigger: TGAGGCTCTCACCAGAAGCCAAGCAGAGGCTGGCAC...ACCACAGACTGGGTAACGTGATGAACAAAAATTTATTTGGCTCACAGTTCTGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp GTTATAGCAGCCCAAACGGACTTAAATACATACTCTCTCTACAACTCAGCTTTCGTGCCAGCCTCTGCTTaGCTTCTGGTGAGAGCCTCA +
Preference number: 4 (lower is better)
Translates to: VIAAQTDLNTYSLYNSAFVPASA*LLVRAS
Trigger: TGAGGCTCTCACCAGAAGCCAAGCAGAGGCTGGCAC...GAAAGCTGAGTTGTAGAGAGAGTATGTATTTAAGTCCGTTTGGGCTGCTATAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp TCTGATGAAAGCACACTTCCTGATGGCAAGGGACCAACTGAACTTGAACCTTCCGTTGGTTTCAATCACTaGGGCTTCCTCATTCTCAGT +
Preference number: 4 (lower is better)
Translates to: SDESTLPDGKGPTELEPSVGFNH*GFLILS
Trigger: ACTGAGAATGAGGAAGCCTCAGTGATTGAAACCAAC...GGAAGGTTCAAGTTCAGTTGGTCCCTTGCCATCAGGAAGTGTGCTTTCATCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000431754.1
CDS-3UTR GCA 90 bp GCTATTCCTCCTAAGATTTTTCAGGTAGCCAAGTCACCCACCAAGATACTGTTTGCCCTGGTTAGGGCTTaGTGGTGTTGGAGAAAGGTT +
Preference number: 4 (lower is better)
Translates to: AIPPKIFQVAKSPTKILFALVRA*WCWRKV
Trigger: AACCTTTCTCCAACACCAGCAAGCCCTAACCAGGGC...AAACAGTATCTTGGTGGGTGACTTGGCTACCTGAAAAATCTTAGGAGGAATAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp GGCATGGTCAGAGAACTGAAAGGAGTTCCATATGGCTACAGCACAATGATGGCGCAGCAGTTAGCATGTTaGCTGGCACAGAATAAGAAT +
Preference number: 4 (lower is better)
Translates to: GMVRELKGVPYGYSTMMAQQLAC*LAQNKN
Trigger: ATTCTTATTCTGTGCCAGGCAACATGCTAACTGCTG...CGCCATCATTGTGCTGTAGCCATATGGAACTCCTTTCAGTTCTCTGACCATGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp TGGATTGTGAGAGACAGGCCAGTAGGCAGGCAAATATATAGCTCTAAAGTAAAGGAGGGATCCGCTCCATaGTCAAAACACCTCCAGCAA +
Preference number: 4 (lower is better)
Translates to: WIVRDRPVGRQIYSSKVKEGSAP*SKHLQQ
Trigger: TTGCTGGAGGTGTTTTGAGCATGGAGCGGATCCCTC...CTTTACTTTAGAGCTATATATTTGCCTGCCTACTGGCCTGTCTCTCACAATCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp GTTATAGCAGCCCAAACGGACTTAAATACATACTCTCTCTACAACTCAGCTTTCTGGTCCAGGAGATACTaGAACTTGTGGAGGAGGGCC +
Preference number: 4 (lower is better)
Translates to: VIAAQTDLNTYSLYNSAFWSRRY*NLWRRA
Trigger: GGCCCTCCTCCACAAGTTCCAGTATCTCCTGGACCA...GAAAGCTGAGTTGTAGAGAGAGTATGTATTTAAGTCCGTTTGGGCTGCTATAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp CCCAAGACTACAGACCTGAAATTTAAGCCCAATACGGCAGGCTCAAAAACTCTGCAGCTCCAGGAACTGTaGAGTTGGTTTCAATCACTG +
Preference number: 4 (lower is better)
Translates to: PKTTDLKFKPNTAGSKTLQLQEL*SWFQSL
Trigger: CAGTGATTGAAACCAACTCCACAGTTCCTGGAGCTG...CAGAGTTTTTGAGCCTGCCGTATTGGGCTTAAATTTCAGGTCTGTAGTCTTGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp GAGAGACAGATGGTAAGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATAAGCCACCACCACACCTaGCCCCTCATTTTCTGTTTT +
Preference number: 4 (lower is better)
Translates to: ERQMVSPLVLGRNPRERISHHHT*PLIFCF
Trigger: AAAACAGAAAATGAGGGGCCAGGTGTGGTGGTGGCT...TATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACTTACCATCTGTCTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp AGTGCCCCCAATGTCTATGTGAGTGGGAGCGTATCTCAGGCAGAGGAAAAGCTCAACTTGGGTTCCAAGTaGAACGATTCCAATTCAATT +
Preference number: 4 (lower is better)
Translates to: SAPNVYVSGSVSQAEEKLNLGSK*NDSNSI
Trigger: AATTGAATTGGAATCGTTCCACTTGGAACCCAAGTT...GAGCTTTTCCTCTGCCTGAGATACGCTCCCACTCACATAGACATTGGGGGCACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp TCCAGAACTGTGAGCCAAATAAATTTTTGTTCATCACGTTACCCAGTCTGTGGTGCCTCAGACCACTCATaGCAGAAAGCAAAGGGGAGC +
Preference number: 4 (lower is better)
Translates to: SRTVSQINFCSSRYPVCGASDHS*QKAKGS
Trigger: GCTCCCCTTTGCTTTCTGCCATGAGTGGTCTGAGGC...ACCACAGACTGGGTAACGTGATGAACAAAAATTTATTTGGCTCACAGTTCTGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp AGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATATGCAGAATGAAGAAAGCCTCAGACCACTCATaGCAGAAAGCAAAGGGGAGC +
Preference number: 4 (lower is better)
Translates to: SPLVLGRNPRERICRMKKASDHS*QKAKGS
Trigger: GCTCCCCTTTGCTTTCTGCCATGAGTGGTCTGAGGC...TTTCTTCATTCTGCATATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp GAGAGACAGATGGTAAGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATAGCATGGTCAGAGAACTaGAAGGAGTTCCATATGGCT +
Preference number: 4 (lower is better)
Translates to: ERQMVSPLVLGRNPRERIAWSEN*KEFHMA
Trigger: AGCCATATGGAACTCCTTTCAGTTCTCTGACCATGC...TATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACTTACCATCTGTCTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp GGCATGGTCAGAGAACTGAAAGGAGTTCCATATGGCTACAGCACAATGATGGCGCTTCCTGCTATGGTTTaGATGCTACAAAAAGCATGT +
Preference number: 4 (lower is better)
Translates to: GMVRELKGVPYGYSTMMALPAMV*MLQKAC
Trigger: ACATGCTTTTTGTAGCATTCAAACCATAGCAGGAAG...CGCCATCATTGTGCTGTAGCCATATGGAACTCCTTTCAGTTCTCTGACCATGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp TGGATTGTGAGAGACAGGCCAGTAGGCAGGCAAATATATAGCTCTAAAGTAAAGAGAATATCTTTCCCCTaGCACACGCACATCCACACC +
Preference number: 4 (lower is better)
Translates to: WIVRDRPVGRQIYSSKVKRISFP*HTHIHT
Trigger: GGTGTGGATGTGCGTGTGTCAGGGGAAAGATATTCT...CTTTACTTTAGAGCTATATATTTGCCTGCCTACTGGCCTGTCTCTCACAATCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp TCTGAGGAGGCAAAATTTAAGCTGAAATCTGAGGCAGGAAAGGGCATGGTCAGAGAACCTTCCACCACCTaGCTCTTCTCAAAACTAAAC +
Preference number: 4 (lower is better)
Translates to: SEEAKFKLKSEAGKGMVREPSTT*LFSKLN
Trigger: GTTTAGTTTTGAGAAGAGGCAGGTGGTGGAAGGTTC...TCTGACCATGCCCTTTCCTGCCTCAGATTTCAGCTTAAATTTTGCCTCCTCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp CCCAAGACTACAGACCTGAAATTTAAGCCCAATACGGCAGGCTCAAAAACTCTGCAGATGCTAGCATCATaGCTTTGGATTTCCCAGGTT +
Preference number: 4 (lower is better)
Translates to: PKTTDLKFKPNTAGSKTLQMLAS*LWISQV
Trigger: AACCTGGGAAATCCAAAGGCATGATGCTAGCATCTG...CAGAGTTTTTGAGCCTGCCGTATTGGGCTTAAATTTCAGGTCTGTAGTCTTGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp GTTATAGCAGCCCAAACGGACTTAAATACATACTCTCTCTACAACTCAGCTTTCCCTCTCTTACCCTTCTaGCTTCTGGCATGGGATGAC +
Preference number: 4 (lower is better)
Translates to: VIAAQTDLNTYSLYNSAFPLLPF*LLAWDD
Trigger: GTCATCCCATGCCAGAAGGCAGAAGGGTAAGAGAGG...GAAAGCTGAGTTGTAGAGAGAGTATGTATTTAAGTCCGTTTGGGCTGCTATAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp GAGAGACAGATGGTAAGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATAGCAACTTCCATCTCTTaGTCACTCTTGCCCTCTCTT +
Preference number: 4 (lower is better)
Translates to: ERQMVSPLVLGRNPRERIATSIS*SLLPSL
Trigger: AAGAGAGGGCAAGAGTGAGCAAGAGATGGAAGTTGC...TATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACTTACCATCTGTCTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp TGGATTGTGAGAGACAGGCCAGTAGGCAGGCAAATATATAGCTCTAAAGTAAAGTTCAAGCAATTCTCCTaGCTCAGGCTCCTGAGTAGC +
Preference number: 4 (lower is better)
Translates to: WIVRDRPVGRQIYSSKVKFKQFS*LRLLSS
Trigger: GCTACTCAGGAGCCTGAGGCAGGAGAATTGCTTGAA...CTTTACTTTAGAGCTATATATTTGCCTGCCTACTGGCCTGTCTCTCACAATCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp AGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATATGCAGAATGAAGAAAAGATACTGGAACTTGTaGAGGAGGGCCCTGGTTAGG +
Preference number: 4 (lower is better)
Translates to: SPLVLGRNPRERICRMKKRYWNL*RRALVR
Trigger: CCTAACCAGGGCCCTCCTCCACAAGTTCCAGTATCT...TTTCTTCATTCTGCATATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp TCCAGAACTGTGAGCCAAATAAATTTTTGTTCATCACGTTACCCAGTCTGTGGTAGATACTGGAACTTGTaGAGGAGGGCCCTGGTTAGG +
Preference number: 4 (lower is better)
Translates to: SRTVSQINFCSSRYPVCGRYWNL*RRALVR
Trigger: CCTAACCAGGGCCCTCCTCCACAAGTTCCAGTATCT...ACCACAGACTGGGTAACGTGATGAACAAAAATTTATTTGGCTCACAGTTCTGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp CTAAGTTCTGGCTTGGCTCAGGTGCCTGCTATCCCTATGACCCTGTGTCTTAGCGATTCTTCATTAAACTaGTTGTCTGATGAAAGCACA +
Preference number: 4 (lower is better)
Translates to: LSSGLAQVPAIPMTLCLSDSSLN*LSDEST
Trigger: TGTGCTTTCATCAGACAACCAGTTTAATGAAGAATC...GCTAAGACACAGGGTCATAGGGATAGCAGGCACCTGAGCCAAGCCAGAACTTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp CTTAGTTCAGGATCAGGAATAGAATCAGCTCCAGGAACTGTGGAGTTGGTTTCACAGCTCCAGGAACTGTaGAGTTGGTTTCAATCACTG +
Preference number: 4 (lower is better)
Translates to: LSSGSGIESAPGTVELVSQLQEL*SWFQSL
Trigger: CAGTGATTGAAACCAACTCCACAGTTCCTGGAGCTG...TGAAACCAACTCCACAGTTCCTGGAGCTGATTCTATTCCTGATCCTGAACTAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000431754.1
CDS-3UTR CCA 90 bp GCTATTCCTCCTAAGATTTTTCAGGTAGCCAAGTCACCCACCAAGATACTGTTTTTCAGATGGGGAGTTTaGGAAGGCATCTCTCTGAGG +
Preference number: 4 (lower is better)
Translates to: AIPPKIFQVAKSPTKILFFRWGV*EGISLR
Trigger: CCTCAGAGAGATGCCTTCCCAAACTCCCCATCTGAA...AAACAGTATCTTGGTGGGTGACTTGGCTACCTGAAAAATCTTAGGAGGAATAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp CTAAGTTCTGGCTTGGCTCAGGTGCCTGCTATCCCTATGACCCTGTGTCTTAGCACTGAGAGTTTTCACTaGATTTGGCAACAAAGTATT +
Preference number: 4 (lower is better)
Translates to: LSSGLAQVPAIPMTLCLSTESFH*IWQQSI
Trigger: AATACTTTGTTGCCAAATCCAGTGAAAACTCTCAGT...GCTAAGACACAGGGTCATAGGGATAGCAGGCACCTGAGCCAAGCCAGAACTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp TCTGAGGAGGCAAAATTTAAGCTGAAATCTGAGGCAGGAAAGGGCATGGTCAGAACGTTACCCAGTCTGTaGTATTCTGTTATAGCAGCC +
Preference number: 4 (lower is better)
Translates to: SEEAKFKLKSEAGKGMVRTLPSL*YSVIAA
Trigger: GGCTGCTATAACAGAATACCACAGACTGGGTAACGT...TCTGACCATGCCCTTTCCTGCCTCAGATTTCAGCTTAAATTTTGCCTCCTCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp TTAAGCCCAATACGGCAGGCTCAAAAACTCTGGTTACTATACCGGATGTCCCAGTGTTGCATTGGAAGGTaGAGCCTAATGGAGATGTTT +
Preference number: 4 (lower is better)
Translates to: LSPIRQAQKLWLLYRMSQCCIGR*SLMEMF
Trigger: AAACATCTCCATTAGGCTCCACCTTCCAATGCAACA...CTGGGACATCCGGTATAGTAACCAGAGTTTTTGAGCCTGCCGTATTGGGCTTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp TCCAGAACTGTGAGCCAAATAAATTTTTGTTCATCACGTTACCCAGTCTGTGGTCAGGCTGGAGTACAATaGCGCAATCTCTGCTCACTG +
Preference number: 4 (lower is better)
Translates to: SRTVSQINFCSSRYPVCGQAGVQ*RNLCSL
Trigger: CAGTGAGCAGAGATTGCGCCATTGTACTCCAGCCTG...ACCACAGACTGGGTAACGTGATGAACAAAAATTTATTTGGCTCACAGTTCTGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp TGGATTGTGAGAGACAGGCCAGTAGGCAGGCAAATATATAGCTCTAAAGTAAAGTTGAGATCTAAGTTCTaGCTTGGCTCAGGTGCCTGC +
Preference number: 4 (lower is better)
Translates to: WIVRDRPVGRQIYSSKVKLRSKF*LGSGAC
Trigger: GCAGGCACCTGAGCCAAGCCAGAACTTAGATCTCAA...CTTTACTTTAGAGCTATATATTTGCCTGCCTACTGGCCTGTCTCTCACAATCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp GAGAGACAGATGGTAAGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATACTCCTTTGCTTTCTTTaGGTCCGGATCAAACCTTTC +
Preference number: 4 (lower is better)
Translates to: ERQMVSPLVLGRNPRERILLCFL*VRIKPF
Trigger: GAAAGGTTTGATCCGGACTCAAAGAAAGCAAAGGAG...TATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACTTACCATCTGTCTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp GCTATTCCTCCTAAGATTTTTCAGGTAGCCAAGTCACCCACCAAGATACTGTTTGCATGGTCAGAGAACTaGAAGGAGTTCCATATGGCT +
Preference number: 4 (lower is better)
Translates to: AIPPKIFQVAKSPTKILFAWSEN*KEFHMA
Trigger: AGCCATATGGAACTCCTTTCAGTTCTCTGACCATGC...AAACAGTATCTTGGTGGGTGACTTGGCTACCTGAAAAATCTTAGGAGGAATAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp GAGAGACAGATGGTAAGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATATCAAAGCTGGAGATCTaGGATTCAGAGAGACAGATG +
Preference number: 4 (lower is better)
Translates to: ERQMVSPLVLGRNPRERISKLEI*DSERQM
Trigger: CATCTGTCTCTCTGAATCTCAGATCTCCAGCTTTGA...TATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACTTACCATCTGTCTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp AGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATATGCAGAATGAAGAAAAGAATATCTTTCCCCTaGCACACGCACATCCACACC +
Preference number: 4 (lower is better)
Translates to: SPLVLGRNPRERICRMKKRISFP*HTHIHT
Trigger: GGTGTGGATGTGCGTGTGTCAGGGGAAAGATATTCT...TTTCTTCATTCTGCATATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp TCTGAGGAGGCAAAATTTAAGCTGAAATCTGAGGCAGGAAAGGGCATGGTCAGATCCTGCATTAACAGTTaGGATCTAAGTTCTGGCTTG +
Preference number: 4 (lower is better)
Translates to: SEEAKFKLKSEAGKGMVRSCINS*DLSSGL
Trigger: CAAGCCAGAACTTAGATCTCAACTGTTAATGCAGGA...TCTGACCATGCCCTTTCCTGCCTCAGATTTCAGCTTAAATTTTGCCTCCTCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp GAGAGACAGATGGTAAGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATAAAGGTTTCTTTGAGCTaGAGTTCGCTGACGAATCTC +
Preference number: 4 (lower is better)
Translates to: ERQMVSPLVLGRNPRERIKVSLS*SSLTNL
Trigger: GAGATTCGTCAGCGAACTGCAGCTCAAAGAAACCTT...TATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACTTACCATCTGTCTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp GAGAGACAGATGGTAAGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATACAGATGCTAGCATCATaGCTTTGGATTTCCCAGGTT +
Preference number: 4 (lower is better)
Translates to: ERQMVSPLVLGRNPRERIQMLAS*LWISQV
Trigger: AACCTGGGAAATCCAAAGGCATGATGCTAGCATCTG...TATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACTTACCATCTGTCTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp GCTATTCCTCCTAAGATTTTTCAGGTAGCCAAGTCACCCACCAAGATACTGTTTAGAACTGTCCTTTGGTaGTCCAGGAGATACTGGAAC +
Preference number: 4 (lower is better)
Translates to: AIPPKIFQVAKSPTKILFRTVLW*SRRYWN
Trigger: GTTCCAGTATCTCCTGGACCACCAAAGGACAGTTCT...AAACAGTATCTTGGTGGGTGACTTGGCTACCTGAAAAATCTTAGGAGGAATAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp GAGAGACAGATGGTAAGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATACAGGCTCAAAAACTCTaGTTACTATACCGGATGTCC +
Preference number: 4 (lower is better)
Translates to: ERQMVSPLVLGRNPRERIQAQKL*LLYRMS
Trigger: GGACATCCGGTATAGTAACCAGAGTTTTTGAGCCTG...TATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACTTACCATCTGTCTCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp AGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATATGCAGAATGAAGAAATACCCTTCTGCCTTCTaGCATGGGATGACAAAGCAC +
Preference number: 4 (lower is better)
Translates to: SPLVLGRNPRERICRMKKYPSAF*HGMTKH
Trigger: GTGCTTTGTCATCCCATGCCAGAAGGCAGAAGGGTA...TTTCTTCATTCTGCATATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp TGGATTGTGAGAGACAGGCCAGTAGGCAGGCAAATATATAGCTCTAAAGTAAAGGTTGGTTTCAATCACTaGGGCTTCCTCATTCTCAGT +
Preference number: 4 (lower is better)
Translates to: WIVRDRPVGRQIYSSKVKVGFNH*GFLILS
Trigger: ACTGAGAATGAGGAAGCCTCAGTGATTGAAACCAAC...CTTTACTTTAGAGCTATATATTTGCCTGCCTACTGGCCTGTCTCTCACAATCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp CAGCAATGGGGATCAAATTTCAACATGAGATTTGCAGGGGTCAAACAAACCACATCAAAGCTGGAGATCTaGGATTCAGAGAGACAGATG +
Preference number: 4 (lower is better)
Translates to: QQWGSNFNMRFAGVKQTTSKLEI*DSERQM
Trigger: CATCTGTCTCTCTGAATCTCAGATCTCCAGCTTTGA...TGTGGTTTGTTTGACCCCTGCAAATCTCATGTTGAAATTTGATCCCCATTGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp CCCAAGACTACAGACCTGAAATTTAAGCCCAATACGGCAGGCTCAAAAACTCTGCATTATAAAAGAGCTTaGGGTTGCAACTTCCATCTC +
Preference number: 4 (lower is better)
Translates to: PKTTDLKFKPNTAGSKTLHYKRA*GCNFHL
Trigger: GAGATGGAAGTTGCAACCTCAAGCTCTTTTATAATG...CAGAGTTTTTGAGCCTGCCGTATTGGGCTTAAATTTCAGGTCTGTAGTCTTGGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp GAGAGACAGATGGTAAGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATAACAGCTTTGGTAATCTaGAATGATGGAGGCCAAGAT +
Preference number: 4 (lower is better)
Translates to: ERQMVSPLVLGRNPRERITALVI*NDGGQD
Trigger: ATCTTGGCCTCCATCATTTCAGATTACCAAAGCTGT...TATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACTTACCATCTGTCTCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp AGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATATGCAGAATGAAGAAAGCAACTTCCATCTCTTaGTCACTCTTGCCCTCTCTT +
Preference number: 4 (lower is better)
Translates to: SPLVLGRNPRERICRMKKATSIS*SLLPSL
Trigger: AAGAGAGGGCAAGAGTGAGCAAGAGATGGAAGTTGC...TTTCTTCATTCTGCATATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp AGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATATGCAGAATGAAGAAACAGCTCCAGGAACTGTaGAGTTGGTTTCAATCACTG +
Preference number: 4 (lower is better)
Translates to: SPLVLGRNPRERICRMKKQLQEL*SWFQSL
Trigger: CAGTGATTGAAACCAACTCCACAGTTCCTGGAGCTG...TTTCTTCATTCTGCATATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp TCTGAGGAGGCAAAATTTAAGCTGAAATCTGAGGCAGGAAAGGGCATGGTCAGAAAACACCTCCAGCAATaGGGATCAAATTTCAACATG +
Preference number: 4 (lower is better)
Translates to: SEEAKFKLKSEAGKGMVRKHLQQ*GSNFNM
Trigger: CATGTTGAAATTTGATCCCCATTGCTGGAGGTGTTT...TCTGACCATGCCCTTTCCTGCCTCAGATTTCAGCTTAAATTTTGCCTCCTCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp TCCAGAACTGTGAGCCAAATAAATTTTTGTTCATCACGTTACCCAGTCTGTGGTCTCCTTTGCTTTCTTTaGGTCCGGATCAAACCTTTC +
Preference number: 4 (lower is better)
Translates to: SRTVSQINFCSSRYPVCGLLCFL*VRIKPF
Trigger: GAAAGGTTTGATCCGGACTCAAAGAAAGCAAAGGAG...ACCACAGACTGGGTAACGTGATGAACAAAAATTTATTTGGCTCACAGTTCTGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp TCCAGAACTGTGAGCCAAATAAATTTTTGTTCATCACGTTACCCAGTCTGTGGTCTCCTCTGGTTCCTCTaGGTCAGATGCTTTTTCAAT +
Preference number: 4 (lower is better)
Translates to: SRTVSQINFCSSRYPVCGLLWFL*VRCFFN
Trigger: ATTGAAAAAGCATCTGACTCAGAGGAACCAGAGGAG...ACCACAGACTGGGTAACGTGATGAACAAAAATTTATTTGGCTCACAGTTCTGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp TGGATTGTGAGAGACAGGCCAGTAGGCAGGCAAATATATAGCTCTAAAGTAAAGTCCTGCATTAACAGTTaGGATCTAAGTTCTGGCTTG +
Preference number: 4 (lower is better)
Translates to: WIVRDRPVGRQIYSSKVKSCINS*DLSSGL
Trigger: CAAGCCAGAACTTAGATCTCAACTGTTAATGCAGGA...CTTTACTTTAGAGCTATATATTTGCCTGCCTACTGGCCTGTCTCTCACAATCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp TCCAGAACTGTGAGCCAAATAAATTTTTGTTCATCACGTTACCCAGTCTGTGGTAAGGTTTCTTTGAGCTaGAGTTCGCTGACGAATCTC +
Preference number: 4 (lower is better)
Translates to: SRTVSQINFCSSRYPVCGKVSLS*SSLTNL
Trigger: GAGATTCGTCAGCGAACTGCAGCTCAAAGAAACCTT...ACCACAGACTGGGTAACGTGATGAACAAAAATTTATTTGGCTCACAGTTCTGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp TGGATTGTGAGAGACAGGCCAGTAGGCAGGCAAATATATAGCTCTAAAGTAAAGCTGCTGACATATAAGTaGATACCTGTTTTGTGGACC +
Preference number: 4 (lower is better)
Translates to: WIVRDRPVGRQIYSSKVKLLTYK*IPVLWT
Trigger: GGTCCACAAAACAGGTATGCACTTATATGTCAGCAG...CTTTACTTTAGAGCTATATATTTGCCTGCCTACTGGCCTGTCTCTCACAATCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp TCCAGAACTGTGAGCCAAATAAATTTTTGTTCATCACGTTACCCAGTCTGTGGTGAACCTTCCACCACCTaGCTCTTCTCAAAACTAAAC +
Preference number: 4 (lower is better)
Translates to: SRTVSQINFCSSRYPVCGEPSTT*LFSKLN
Trigger: GTTTAGTTTTGAGAAGAGGCAGGTGGTGGAAGGTTC...ACCACAGACTGGGTAACGTGATGAACAAAAATTTATTTGGCTCACAGTTCTGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp TGGATTGTGAGAGACAGGCCAGTAGGCAGGCAAATATATAGCTCTAAAGTAAAGGAGAATTCGTACCAGTaGCAACGTAGTTACAGTTCT +
Preference number: 4 (lower is better)
Translates to: WIVRDRPVGRQIYSSKVKENSYQ*QRSYSS
Trigger: AGAACTGTAACTACGTTGGCACTGGTACGAATTCTC...CTTTACTTTAGAGCTATATATTTGCCTGCCTACTGGCCTGTCTCTCACAATCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp TTAAGCCCAATACGGCAGGCTCAAAAACTCTGGTTACTATACCGGATGTCCCAGGATTCTTCATTAAACTaGTTGTCTGATGAAAGCACA +
Preference number: 4 (lower is better)
Translates to: LSPIRQAQKLWLLYRMSQDSSLN*LSDEST
Trigger: TGTGCTTTCATCAGACAACCAGTTTAATGAAGAATC...CTGGGACATCCGGTATAGTAACCAGAGTTTTTGAGCCTGCCGTATTGGGCTTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp GTTATAGCAGCCCAAACGGACTTAAATACATACTCTCTCTACAACTCAGCTTTCCAGGAACTGTGGAGTTaGTTTCAATCACTGAGGCTT +
Preference number: 4 (lower is better)
Translates to: VIAAQTDLNTYSLYNSAFQELWS*FQSLRL
Trigger: AAGCCTCAGTGATTGAAACCAACTCCACAGTTCCTG...GAAAGCTGAGTTGTAGAGAGAGTATGTATTTAAGTCCGTTTGGGCTGCTATAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp AGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATATGCAGAATGAAGAAACAGGCTCAAAAACTCTaGTTACTATACCGGATGTCC +
Preference number: 4 (lower is better)
Translates to: SPLVLGRNPRERICRMKKQAQKL*LLYRMS
Trigger: GGACATCCGGTATAGTAACCAGAGTTTTTGAGCCTG...TTTCTTCATTCTGCATATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp CCCAAGACTACAGACCTGAAATTTAAGCCCAATACGGCAGGCTCAAAAACTCTGTCATTCTTGAATATATaGATTGTGAGAGACAGGCCA +
Preference number: 4 (lower is better)
Translates to: PKTTDLKFKPNTAGSKTLSFLNI*IVRDRP
Trigger: TGGCCTGTCTCTCACAATCCATATATTCAAGAATGA...CAGAGTTTTTGAGCCTGCCGTATTGGGCTTAAATTTCAGGTCTGTAGTCTTGGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp TTAAGCCCAATACGGCAGGCTCAAAAACTCTGGTTACTATACCGGATGTCCCAGCAATCATCTCTACCTTaGTTCATCTTTACACAAGTA +
Preference number: 4 (lower is better)
Translates to: LSPIRQAQKLWLLYRMSQQSSLP*FIFTQV
Trigger: TACTTGTGTAAAGATGAACCAAGGTAGAGATGATTG...CTGGGACATCCGGTATAGTAACCAGAGTTTTTGAGCCTGCCGTATTGGGCTTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp CAGCAATGGGGATCAAATTTCAACATGAGATTTGCAGGGGTCAAACAAACCACAATTGTGCTAGACCCTTaGGATACAGACATGAATAAG +
Preference number: 4 (lower is better)
Translates to: QQWGSNFNMRFAGVKQTTIVLDP*DTDMNK
Trigger: CTTATTCATGTCTGTATCTCAAGGGTCTAGCACAAT...TGTGGTTTGTTTGACCCCTGCAAATCTCATGTTGAAATTTGATCCCCATTGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp TGGATTGTGAGAGACAGGCCAGTAGGCAGGCAAATATATAGCTCTAAAGTAAAGCTTCCTGCTATGGTTTaGATGCTACAAAAAGCATGT +
Preference number: 4 (lower is better)
Translates to: WIVRDRPVGRQIYSSKVKLPAMV*MLQKAC
Trigger: ACATGCTTTTTGTAGCATTCAAACCATAGCAGGAAG...CTTTACTTTAGAGCTATATATTTGCCTGCCTACTGGCCTGTCTCTCACAATCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp GAGAGACAGATGGTAAGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATATTTGGTAATCTGAAATaGTGGAGGCCAAGATTAGAA +
Preference number: 4 (lower is better)
Translates to: ERQMVSPLVLGRNPRERIFGNLK*WRPRLE
Trigger: TTCTAATCTTGGCCTCCATCATTTCAGATTACCAAA...TATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACTTACCATCTGTCTCTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp TCCAGAACTGTGAGCCAAATAAATTTTTGTTCATCACGTTACCCAGTCTGTGGTACAGCTTTGGTAATCTaGAATGATGGAGGCCAAGAT +
Preference number: 4 (lower is better)
Translates to: SRTVSQINFCSSRYPVCGTALVI*NDGGQD
Trigger: ATCTTGGCCTCCATCATTTCAGATTACCAAAGCTGT...ACCACAGACTGGGTAACGTGATGAACAAAAATTTATTTGGCTCACAGTTCTGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp GAGAGACAGATGGTAAGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATAAAGCTATACCTCTTCTaGTACAACTATGTTCTCCAT +
Preference number: 4 (lower is better)
Translates to: ERQMVSPLVLGRNPRERIKLYLF*YNYVLH
Trigger: ATGGAGAACATAGTTGTATCAGAAGAGGTATAGCTT...TATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACTTACCATCTGTCTCTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp CAGCAATGGGGATCAAATTTCAACATGAGATTTGCAGGGGTCAAACAAACCACAGATCAAATTTCAACATaGGATTTGCAGGGGTCAAAC +
Preference number: 4 (lower is better)
Translates to: QQWGSNFNMRFAGVKQTTDQIST*DLQGSN
Trigger: GTTTGACCCCTGCAAATCTCATGTTGAAATTTGATC...TGTGGTTTGTTTGACCCCTGCAAATCTCATGTTGAAATTTGATCCCCATTGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp CAGCAATGGGGATCAAATTTCAACATGAGATTTGCAGGGGTCAAACAAACCACAAAGCATTTACTACTCTaGCGTCAAAGATTCTCCACT +
Preference number: 4 (lower is better)
Translates to: QQWGSNFNMRFAGVKQTTKHLLL*RQRFST
Trigger: AGTGGAGAATCTTTGACGGCAGAGTAGTAAATGCTT...TGTGGTTTGTTTGACCCCTGCAAATCTCATGTTGAAATTTGATCCCCATTGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp GCTATTCCTCCTAAGATTTTTCAGGTAGCCAAGTCACCCACCAAGATACTGTTTGAGAATTCGTACCAGTaGCTATGTGGTAACAACTTT +
Preference number: 4 (lower is better)
Translates to: AIPPKIFQVAKSPTKILFENSYQ*LCGNNF
Trigger: AAAGTTGTTACCACATAGGCACTGGTACGAATTCTC...AAACAGTATCTTGGTGGGTGACTTGGCTACCTGAAAAATCTTAGGAGGAATAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp TGGATTGTGAGAGACAGGCCAGTAGGCAGGCAAATATATAGCTCTAAAGTAAAGAGAATAGATAGCAAGTaGACAAGGTTGGAGACAAAG +
Preference number: 4 (lower is better)
Translates to: WIVRDRPVGRQIYSSKVKRIDSK*TRLETK
Trigger: CTTTGTCTCCAACCTTGTGCACTTGCTATCTATTCT...CTTTACTTTAGAGCTATATATTTGCCTGCCTACTGGCCTGTCTCTCACAATCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp TGGATTGTGAGAGACAGGCCAGTAGGCAGGCAAATATATAGCTCTAAAGTAAAGTGCATACCTGTTTTGTaGACCATCACCAACCAAATA +
Preference number: 4 (lower is better)
Translates to: WIVRDRPVGRQIYSSKVKCIPVL*TITNQI
Trigger: TATTTGGTTGGTGATGGTCCACAAAACAGGTATGCA...CTTTACTTTAGAGCTATATATTTGCCTGCCTACTGGCCTGTCTCTCACAATCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp CAGCAATGGGGATCAAATTTCAACATGAGATTTGCAGGGGTCAAACAAACCACATGCATACCTGTTTTGTaGACCATCACCAACCAAATA +
Preference number: 4 (lower is better)
Translates to: QQWGSNFNMRFAGVKQTTCIPVL*TITNQI
Trigger: TATTTGGTTGGTGATGGTCCACAAAACAGGTATGCA...TGTGGTTTGTTTGACCCCTGCAAATCTCATGTTGAAATTTGATCCCCATTGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp TGGATTGTGAGAGACAGGCCAGTAGGCAGGCAAATATATAGCTCTAAAGTAAAGGAAACAGATCAAAGCTaGAGATCTGAGATTCAGAGA +
Preference number: 4 (lower is better)
Translates to: WIVRDRPVGRQIYSSKVKETDQS*RSEIQR
Trigger: TCTCTGAATCTCAGATCTCCAGCTTTGATCTGTTTC...CTTTACTTTAGAGCTATATATTTGCCTGCCTACTGGCCTGTCTCTCACAATCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp GTTATAGCAGCCCAAACGGACTTAAATACATACTCTCTCTACAACTCAGCTTTCTGTTGCATTGGAAGGTaGAGCCTAATGGAGATGTTT +
Preference number: 4 (lower is better)
Translates to: VIAAQTDLNTYSLYNSAFCCIGR*SLMEMF
Trigger: AAACATCTCCATTAGGCTCCACCTTCCAATGCAACA...GAAAGCTGAGTTGTAGAGAGAGTATGTATTTAAGTCCGTTTGGGCTGCTATAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp TCTGAGGAGGCAAAATTTAAGCTGAAATCTGAGGCAGGAAAGGGCATGGTCAGACAATCATCTCTACCTTaGTTCATCTTTACACAAGTA +
Preference number: 4 (lower is better)
Translates to: SEEAKFKLKSEAGKGMVRQSSLP*FIFTQV
Trigger: TACTTGTGTAAAGATGAACCAAGGTAGAGATGATTG...TCTGACCATGCCCTTTCCTGCCTCAGATTTCAGCTTAAATTTTGCCTCCTCAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp GTTATAGCAGCCCAAACGGACTTAAATACATACTCTCTCTACAACTCAGCTTTCAAGAAACACTGCAGTTaGCTGTTTCATTGCATTCTC +
Preference number: 4 (lower is better)
Translates to: VIAAQTDLNTYSLYNSAFKKHCS*LFHCIL
Trigger: GAGAATGCAATGAAACAGTCAACTGCAGTGTTTCTT...GAAAGCTGAGTTGTAGAGAGAGTATGTATTTAAGTCCGTTTGGGCTGCTATAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp GTTATAGCAGCCCAAACGGACTTAAATACATACTCTCTCTACAACTCAGCTTTCATTGTGCTAGACCCTTaGGATACAGACATGAATAAG +
Preference number: 4 (lower is better)
Translates to: VIAAQTDLNTYSLYNSAFIVLDP*DTDMNK
Trigger: CTTATTCATGTCTGTATCTCAAGGGTCTAGCACAAT...GAAAGCTGAGTTGTAGAGAGAGTATGTATTTAAGTCCGTTTGGGCTGCTATAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp TCCAGAACTGTGAGCCAAATAAATTTTTGTTCATCACGTTACCCAGTCTGTGGTCATTATAAAAGAGCTTaGGGTTGCAACTTCCATCTC +
Preference number: 4 (lower is better)
Translates to: SRTVSQINFCSSRYPVCGHYKRA*GCNFHL
Trigger: GAGATGGAAGTTGCAACCTCAAGCTCTTTTATAATG...ACCACAGACTGGGTAACGTGATGAACAAAAATTTATTTGGCTCACAGTTCTGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp GCTATTCCTCCTAAGATTTTTCAGGTAGCCAAGTCACCCACCAAGATACTGTTTTTTGGTAATCTGAAATaGTGGAGGCCAAGATTAGAA +
Preference number: 4 (lower is better)
Translates to: AIPPKIFQVAKSPTKILFFGNLK*WRPRLE
Trigger: TTCTAATCTTGGCCTCCATCATTTCAGATTACCAAA...AAACAGTATCTTGGTGGGTGACTTGGCTACCTGAAAAATCTTAGGAGGAATAGC
40% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR TCA 90 bp CAGCAATGGGGATCAAATTTCAACATGAGATTTGCAGGGGTCAAACAAACCACAAAGCTATACCTCTTCTaGTACAACTATGTTCTCCAT +
Preference number: 4 (lower is better)
Translates to: QQWGSNFNMRFAGVKQTTKLYLF*YNYVLH
Trigger: ATGGAGAACATAGTTGTATCAGAAGAGGTATAGCTT...TGTGGTTTGTTTGACCCCTGCAAATCTCATGTTGAAATTTGATCCCCATTGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp GCTATTCCTCCTAAGATTTTTCAGGTAGCCAAGTCACCCACCAAGATACTGTTTTCCTCTGAAGTCATTTaGCTATATTCAAATCCCTCT +
Preference number: 4 (lower is better)
Translates to: AIPPKIFQVAKSPTKILFSSEVI*LYSNPS
Trigger: AGAGGGATTTGAATATAGGCAAATGACTTCAGAGGA...AAACAGTATCTTGGTGGGTGACTTGGCTACCTGAAAAATCTTAGGAGGAATAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp GTTATAGCAGCCCAAACGGACTTAAATACATACTCTCTCTACAACTCAGCTTTCAGAATAGATAGCAAGTaGACAAGGTTGGAGACAAAG +
Preference number: 4 (lower is better)
Translates to: VIAAQTDLNTYSLYNSAFRIDSK*TRLETK
Trigger: CTTTGTCTCCAACCTTGTGCACTTGCTATCTATTCT...GAAAGCTGAGTTGTAGAGAGAGTATGTATTTAAGTCCGTTTGGGCTGCTATAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp TCCAGAACTGTGAGCCAAATAAATTTTTGTTCATCACGTTACCCAGTCTGTGGTTTTCAACATGAGATTTaGAGGGGTCAAACAAACCAC +
Preference number: 4 (lower is better)
Translates to: SRTVSQINFCSSRYPVCGFQHEI*RGQTNH
Trigger: GTGGTTTGTTTGACCCCTGCAAATCTCATGTTGAAA...ACCACAGACTGGGTAACGTGATGAACAAAAATTTATTTGGCTCACAGTTCTGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp GTTATAGCAGCCCAAACGGACTTAAATACATACTCTCTCTACAACTCAGCTTTCTTTCAACATGAGATTTaGAGGGGTCAAACAAACCAC +
Preference number: 4 (lower is better)
Translates to: VIAAQTDLNTYSLYNSAFFQHEI*RGQTNH
Trigger: GTGGTTTGTTTGACCCCTGCAAATCTCATGTTGAAA...GAAAGCTGAGTTGTAGAGAGAGTATGTATTTAAGTCCGTTTGGGCTGCTATAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp TGGATTGTGAGAGACAGGCCAGTAGGCAGGCAAATATATAGCTCTAAAGTAAAGAAAATTACAAATGGCTaGCCTACGATGTTCCTGAAT +
Preference number: 4 (lower is better)
Translates to: WIVRDRPVGRQIYSSKVKKITNG*PTMFLN
Trigger: ATTCAGGAACATCGTAGGCCAGCCATTTGTAATTTT...CTTTACTTTAGAGCTATATATTTGCCTGCCTACTGGCCTGTCTCTCACAATCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp TGGATTGTGAGAGACAGGCCAGTAGGCAGGCAAATATATAGCTCTAAAGTAAAGTCATTCTTGAATATATaGATTGTGAGAGACAGGCCA +
Preference number: 4 (lower is better)
Translates to: WIVRDRPVGRQIYSSKVKSFLNI*IVRDRP
Trigger: TGGCCTGTCTCTCACAATCCATATATTCAAGAATGA...CTTTACTTTAGAGCTATATATTTGCCTGCCTACTGGCCTGTCTCTCACAATCCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp TGGATTGTGAGAGACAGGCCAGTAGGCAGGCAAATATATAGCTCTAAAGTAAAGAGTTGCTTCCTGCTATaGTTTGAATGCTACAAAAAG +
Preference number: 4 (lower is better)
Translates to: WIVRDRPVGRQIYSSKVKSCFLL*FECYKK
Trigger: CTTTTTGTAGCATTCAAACCATAGCAGGAAGCAACT...CTTTACTTTAGAGCTATATATTTGCCTGCCTACTGGCCTGTCTCTCACAATCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp TGGATTGTGAGAGACAGGCCAGTAGGCAGGCAAATATATAGCTCTAAAGTAAAGAACTTGGGTTCCAAGTaGAACGATTCCAATTCAATT +
Preference number: 4 (lower is better)
Translates to: WIVRDRPVGRQIYSSKVKNLGSK*NDSNSI
Trigger: AATTGAATTGGAATCGTTCCACTTGGAACCCAAGTT...CTTTACTTTAGAGCTATATATTTGCCTGCCTACTGGCCTGTCTCTCACAATCCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp AGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATATGCAGAATGAAGAAAAAACACCTCCAGCAATaGGGATCAAATTTCAACATG +
Preference number: 4 (lower is better)
Translates to: SPLVLGRNPRERICRMKKKHLQQ*GSNFNM
Trigger: CATGTTGAAATTTGATCCCCATTGCTGGAGGTGTTT...TTTCTTCATTCTGCATATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACT
40% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR CAA 72 bp TTTCCCAGGTTCCAGAACTGTGAGCCAAATAAATTTTaGTTCATCACGTTACCCAGTCTGTGGTATTCTGTT +
Preference number: 4 (lower is better)
Translates to: FPRFQNCEPNKF*FITLPSLWYSV
Trigger: AACAGAATACCACAGACTGGGTAACGTGATGAACAAAAATTTATTTGGCTCACAGTTCTGGAACCTGGGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR CAA 72 bp AGAACATCGTGTTCTAAAGATTCTTCATTAAACTGGTaGTCTGATGAAAGCACACTTCCTGATGGCAAGGGA +
Preference number: 4 (lower is better)
Translates to: RTSCSKDSSLNW*SDESTLPDGKG
Trigger: TCCCTTGCCATCAGGAAGTGTGCTTTCATCAGACAACCAGTTTAATGAAGAATCTTTAGAACACGATGTTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000431754.1
CDS-3UTR GCA 90 bp GTTATAGCAGCCCAAACGGACTTAAATACATACTCTCTCTACAACTCAGCTTTCTCCTCTGAAGTCATTTaGCTATATTCAAATCCCTCT +
Preference number: 4 (lower is better)
Translates to: VIAAQTDLNTYSLYNSAFSSEVI*LYSNPS
Trigger: AGAGGGATTTGAATATAGGCAAATGACTTCAGAGGA...GAAAGCTGAGTTGTAGAGAGAGTATGTATTTAAGTCCGTTTGGGCTGCTATAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp TGGATTGTGAGAGACAGGCCAGTAGGCAGGCAAATATATAGCTCTAAAGTAAAGGAGATGAGAAAAGACTaGATATGCAAAACACAGAAA +
Preference number: 4 (lower is better)
Translates to: WIVRDRPVGRQIYSSKVKEMRKD*ICKTQK
Trigger: TTTCTGTGTTTTGCATATGCAGTCTTTTCTCATCTC...CTTTACTTTAGAGCTATATATTTGCCTGCCTACTGGCCTGTCTCTCACAATCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp GTTATAGCAGCCCAAACGGACTTAAATACATACTCTCTCTACAACTCAGCTTTCGCTGTCTCAATAGTGTaGGTCTTTGTACATTCAAAA +
Preference number: 4 (lower is better)
Translates to: VIAAQTDLNTYSLYNSAFAVSIV*VFVHSK
Trigger: TTTTGAATGTACAAAGACCCACACTATTGAGACAGC...GAAAGCTGAGTTGTAGAGAGAGTATGTATTTAAGTCCGTTTGGGCTGCTATAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp TCCAGAACTGTGAGCCAAATAAATTTTTGTTCATCACGTTACCCAGTCTGTGGTGCTGTCTCAATAGTGTaGGTCTTTGTACATTCAAAA +
Preference number: 4 (lower is better)
Translates to: SRTVSQINFCSSRYPVCGAVSIV*VFVHSK
Trigger: TTTTGAATGTACAAAGACCCACACTATTGAGACAGC...ACCACAGACTGGGTAACGTGATGAACAAAAATTTATTTGGCTCACAGTTCTGGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp GTTATAGCAGCCCAAACGGACTTAAATACATACTCTCTCTACAACTCAGCTTTCAAAATTACAAATGGCTaGCCTACGATGTTCCTGAAT +
Preference number: 4 (lower is better)
Translates to: VIAAQTDLNTYSLYNSAFKITNG*PTMFLN
Trigger: ATTCAGGAACATCGTAGGCCAGCCATTTGTAATTTT...GAAAGCTGAGTTGTAGAGAGAGTATGTATTTAAGTCCGTTTGGGCTGCTATAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp AGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATATGCAGAATGAAGAAAGTTAAAAATTACAAATaGCTGGCCTACGATGTTCCT +
Preference number: 4 (lower is better)
Translates to: SPLVLGRNPRERICRMKKVKNYK*LAYDVP
Trigger: AGGAACATCGTAGGCCAGCCATTTGTAATTTTTAAC...TTTCTTCATTCTGCATATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
3UTR CAA 72 bp TTCCTGCTATGGTTTGAATGCTACAAAAAGCATGTGTaGAAAACTTATGCTAACTGTTGCATTGGAAGGTGG +
Preference number: 4 (lower is better)
Translates to: FLLWFECYKKHV*KTYANCCIGRW
Trigger: CCACCTTCCAATGCAACAGTTAGCATAAGTTTTCAACACATGCTTTTTGTAGCATTCAAACCATAGCAGGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR GCA 90 bp TCCAGAACTGTGAGCCAAATAAATTTTTGTTCATCACGTTACCCAGTCTGTGGTGAGATGAGAAAAGACTaGATATGCAAAACACAGAAA +
Preference number: 4 (lower is better)
Translates to: SRTVSQINFCSSRYPVCGEMRKD*ICKTQK
Trigger: TTTCTGTGTTTTGCATATGCAGTCTTTTCTCATCTC...ACCACAGACTGGGTAACGTGATGAACAAAAATTTATTTGGCTCACAGTTCTGGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp GTTATAGCAGCCCAAACGGACTTAAATACATACTCTCTCTACAACTCAGCTTTCACTGAGAGTTTTCACTaGATTTGGCAACAAAGTATT +
Preference number: 4 (lower is better)
Translates to: VIAAQTDLNTYSLYNSAFTESFH*IWQQSI
Trigger: AATACTTTGTTGCCAAATCCAGTGAAAACTCTCAGT...GAAAGCTGAGTTGTAGAGAGAGTATGTATTTAAGTCCGTTTGGGCTGCTATAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CCA 90 bp GGTATTTTGTCATCTGTCTGCTCTGTATTATCATCAAGAACATCGTGTTCTAAACGAAAAGCTGTTTTGTaGACCATCACCAACCAAATA +
Preference number: 4 (lower is better)
Translates to: GILSSVCSVLSSRTSCSKRKAVL*TITNQI
Trigger: TATTTGGTTGGTGATGGTCCACAAAACAGCTTTTCG...TTTAGAACACGATGTTCTTGATGATAATACAGAGCAGACAGATGACAAAATACC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000431754.1
CDS-3UTR CCA 90 bp GGTATTTTGTCATCTGTCTGCTCTGTATTATCATCAAGAACATCGTGTTCTAAAGATTCTTCATTAAACTaGTTGTCTGATGAAAGCACA +
Preference number: 4 (lower is better)
Translates to: GILSSVCSVLSSRTSCSKDSSLN*LSDEST
Trigger: TGTGCTTTCATCAGACAACCAGTTTAATGAAGAATC...TTTAGAACACGATGTTCTTGATGATAATACAGAGCAGACAGATGACAAAATACC
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000431754.1
CDS CCA 90 bp GGGTCCACCAGGGGCAGAACTGTCCTTTGGTGGTCCAGGAGATACTaGAACTTGTGGAGGAGGGCCCTGGTTAGGGCTTGCTGGTGTTGG +
Preference number: 5 (lower is better)
Translates to: GSTRGRTVLWWSRRY*NLWRRALVRACWCW
Trigger: CCAACACCAGCAAGCCCTAACCAGGGCCCTCCTCCACAAGTTCCAGTATCTCCTGGACCACCAAAGGACAGTTCTGCCCCTGGTGGACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000272748.9
ENST00000409660.5
ENST00000544803.5
CDS CCA 90 bp AACAGTCCTTTCTGGGGGTCCACCAGGGGCAGAACTGTCCTTTGGTaGTCCAGGAGATACTGGAACTTGTGGAGGAGGGCCCTGGTTAGG +
Preference number: 5 (lower is better)
Translates to: NSPFWGSTRGRTVLW*SRRYWNLWRRALVR
Trigger: CCTAACCAGGGCCCTCCTCCACAAGTTCCAGTATCTCCTGGACCACCAAAGGACAGTTCTGCCCCTGGTGGACCCCCAGAAAGGACTGTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000272748.9
ENST00000409660.5
ENST00000544803.5
CDS TCA 90 bp CTTTTAAAGCCTGTTCTGCCAAGTCTCGCTGGAGAAGGAAACCCCTaGAACTGGTCCTGGTGGTCTCAGACCGCCGCGCGAGCGAAGAGT +
Preference number: 5 (lower is better)
Translates to: LLKPVLPSLAGEGNP*NWSWWSQTAARAKS
Trigger: ACTCTTCGCTCGCGCGGCGGTCTGAGACCACCAGGACCAGTTTCAGGGGTTTCCTTCTCCAGCGAGACTTGGCAGAACAGGCTTTAAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000445472.1
ENST00000466445.1
CDS CCA 90 bp AGGGGCAGAACTGTCCTTTGGTGGTCCAGGAGATACTGGAACTTGTaGAGGAGGGCCCTGGTTAGGGCTTGCTGGTGTTGGAGAAAGGTT +
Preference number: 5 (lower is better)
Translates to: RGRTVLWWSRRYWNL*RRALVRACWCWRKV
Trigger: AACCTTTCTCCAACACCAGCAAGCCCTAACCAGGGCCCTCCTCCACAAGTTCCAGTATCTCCTGGACCACCAAAGGACAGTTCTGCCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000272748.9
ENST00000409660.5
ENST00000544803.5
CDS-3UTR CAA 90 bp CTAAGTTCTGGCTTGGCTCAGGTGCCTGCTATCCCTATGACCCTGTGTCTTAGCAACACTTACAGGACGTaGAGAGCAAGAGGCCAGAGA +
Preference number: 5 (lower is better)
Translates to: LSSGLAQVPAIPMTLCLSNTYRT*RARGQR
Trigger: TCTCTGGCCTCTTGCTCTCAACGTCCTGTAAGTGTT...GCTAAGACACAGGGTCATAGGGATAGCAGGCACCTGAGCCAAGCCAGAACTTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp TCTGATGAAAGCACACTTCCTGATGGCAAGGGACCAACTGAACTTGAACCTTCCAGGGACCAACTGAACTaGAACCTTCCACCACCTGCC +
Preference number: 5 (lower is better)
Translates to: SDESTLPDGKGPTELEPSRDQLN*NLPPPA
Trigger: GGCAGGTGGTGGAAGGTTCAAGTTCAGTTGGTCCCT...GGAAGGTTCAAGTTCAGTTGGTCCCTTGCCATCAGGAAGTGTGCTTTCATCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000431754.1
CDS-3UTR CAA 90 bp GCTATTCCTCCTAAGATTTTTCAGGTAGCCAAGTCACCCACCAAGATACTGTTTGGTGCCAGCCTCTGCTaGGCTTCTGGTGAGAGCCTC +
Preference number: 5 (lower is better)
Translates to: AIPPKIFQVAKSPTKILFGASLC*ASGESL
Trigger: GAGGCTCTCACCAGAAGCCAAGCAGAGGCTGGCACC...AAACAGTATCTTGGTGGGTGACTTGGCTACCTGAAAAATCTTAGGAGGAATAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp CCCAAGACTACAGACCTGAAATTTAAGCCCAATACGGCAGGCTCAAAAACTCTGGGGCAGAACTGTCCTTaGGTGGTCCAGGAGATACTG +
Preference number: 5 (lower is better)
Translates to: PKTTDLKFKPNTAGSKTLGQNCP*VVQEIL
Trigger: CAGTATCTCCTGGACCACCAAAGGACAGTTCTGCCC...CAGAGTTTTTGAGCCTGCCGTATTGGGCTTAAATTTCAGGTCTGTAGTCTTGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp AGTGCCCCCAATGTCTATGTGAGTGGGAGCGTATCTCAGGCAGAGGAAAAGCTCAAGTGCATACCTGTTTaGTGGACCATCACCAACCAA +
Preference number: 5 (lower is better)
Translates to: SAPNVYVSGSVSQAEEKLKCIPV*WTITNQ
Trigger: TTGGTTGGTGATGGTCCACAAAACAGGTATGCACTT...GAGCTTTTCCTCTGCCTGAGATACGCTCCCACTCACATAGACATTGGGGGCACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp CTAAGTTCTGGCTTGGCTCAGGTGCCTGCTATCCCTATGACCCTGTGTCTTAGCAAGTGCATACCTGTTTaGTGGACCATCACCAACCAA +
Preference number: 5 (lower is better)
Translates to: LSSGLAQVPAIPMTLCLSKCIPV*WTITNQ
Trigger: TTGGTTGGTGATGGTCCACAAAACAGGTATGCACTT...GCTAAGACACAGGGTCATAGGGATAGCAGGCACCTGAGCCAAGCCAGAACTTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp TCTGAGGAGGCAAAATTTAAGCTGAAATCTGAGGCAGGAAAGGGCATGGTCAGAAGGGACCAACTGAACTaGAACCTTCCACCACCTGCC +
Preference number: 5 (lower is better)
Translates to: SEEAKFKLKSEAGKGMVRRDQLN*NLPPPA
Trigger: GGCAGGTGGTGGAAGGTTCAAGTTCAGTTGGTCCCT...TCTGACCATGCCCTTTCCTGCCTCAGATTTCAGCTTAAATTTTGCCTCCTCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp TTAAGCCCAATACGGCAGGCTCAAAAACTCTGGTTACTATACCGGATGTCCCAGCTTCAGATGGGGAGTTaGGGAAGGCATCTCTCTGAG +
Preference number: 5 (lower is better)
Translates to: LSPIRQAQKLWLLYRMSQLQMGS*GRHLSE
Trigger: CTCAGAGAGATGCCTTCCCAAACTCCCCATCTGAAG...CTGGGACATCCGGTATAGTAACCAGAGTTTTTGAGCCTGCCGTATTGGGCTTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp AGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATATGCAGAATGAAGAAAGGTGCCAGCCTCTGCTaGGCTTCTGGTGAGAGCCTC +
Preference number: 5 (lower is better)
Translates to: SPLVLGRNPRERICRMKKGASLC*ASGESL
Trigger: GAGGCTCTCACCAGAAGCCAAGCAGAGGCTGGCACC...TTTCTTCATTCTGCATATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp TTAAGCCCAATACGGCAGGCTCAAAAACTCTGGTTACTATACCGGATGTCCCAGGATCTAAGTTCTGGCTaGGCTCAGGTGCCTGCTATC +
Preference number: 5 (lower is better)
Translates to: LSPIRQAQKLWLLYRMSQDLSSG*AQVPAI
Trigger: GATAGCAGGCACCTGAGCCAAGCCAGAACTTAGATC...CTGGGACATCCGGTATAGTAACCAGAGTTTTTGAGCCTGCCGTATTGGGCTTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp CTAAGTTCTGGCTTGGCTCAGGTGCCTGCTATCCCTATGACCCTGTGTCTTAGCCTAGAACTTCTACAGTaGAAGGTTTTGTCCTCCATC +
Preference number: 5 (lower is better)
Translates to: LSSGLAQVPAIPMTLCLSLELLQ*KVLSSI
Trigger: GATGGAGGACAAAACCTTCAACTGTAGAAGTTCTAG...GCTAAGACACAGGGTCATAGGGATAGCAGGCACCTGAGCCAAGCCAGAACTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp TTAAGCCCAATACGGCAGGCTCAAAAACTCTGGTTACTATACCGGATGTCCCAGTGGAGAAAGGTTTCTTaGAGCTGCAGTTCGCTGACG +
Preference number: 5 (lower is better)
Translates to: LSPIRQAQKLWLLYRMSQWRKVS*SCSSLT
Trigger: CGTCAGCGAACTGCAGCTCAAAGAAACCTTTCTCCA...CTGGGACATCCGGTATAGTAACCAGAGTTTTTGAGCCTGCCGTATTGGGCTTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp TTAAGCCCAATACGGCAGGCTCAAAAACTCTGGTTACTATACCGGATGTCCCAGAACACTTACAGGACGTaGAGAGCAAGAGGCCAGAGA +
Preference number: 5 (lower is better)
Translates to: LSPIRQAQKLWLLYRMSQNTYRT*RARGQR
Trigger: TCTCTGGCCTCTTGCTCTCAACGTCCTGTAAGTGTT...CTGGGACATCCGGTATAGTAACCAGAGTTTTTGAGCCTGCCGTATTGGGCTTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp GGCATGGTCAGAGAACTGAAAGGAGTTCCATATGGCTACAGCACAATGATGGCGCAGATGGTAAGTCCTTaGGTGTTGGGAAGAAACCCT +
Preference number: 5 (lower is better)
Translates to: GMVRELKGVPYGYSTMMAQMVSP*VLGRNP
Trigger: AGGGTTTCTTCCCAACACCAAAGGACTTACCATCTG...CGCCATCATTGTGCTGTAGCCATATGGAACTCCTTTCAGTTCTCTGACCATGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp AGTGCCCCCAATGTCTATGTGAGTGGGAGCGTATCTCAGGCAGAGGAAAAGCTCGCAAAATTTCCAAACTaGGGTTCCAAGTGGAACGAT +
Preference number: 5 (lower is better)
Translates to: SAPNVYVSGSVSQAEEKLAKFPN*GSKWND
Trigger: ATCGTTCCACTTGGAACCCAAGTTTGGAAATTTTGC...GAGCTTTTCCTCTGCCTGAGATACGCTCCCACTCACATAGACATTGGGGGCACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp TCTGAGGAGGCAAAATTTAAGCTGAAATCTGAGGCAGGAAAGGGCATGGTCAGATGGAGAAAGGTTTCTTaGAGCTGCAGTTCGCTGACG +
Preference number: 5 (lower is better)
Translates to: SEEAKFKLKSEAGKGMVRWRKVS*SCSSLT
Trigger: CGTCAGCGAACTGCAGCTCAAAGAAACCTTTCTCCA...TCTGACCATGCCCTTTCCTGCCTCAGATTTCAGCTTAAATTTTGCCTCCTCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp TCTGAGGAGGCAAAATTTAAGCTGAAATCTGAGGCAGGAAAGGGCATGGTCAGAATCTCTTGCTCACTCTaGCCCTCTCTTACCCTTCTG +
Preference number: 5 (lower is better)
Translates to: SEEAKFKLKSEAGKGMVRISCSL*PSLTLL
Trigger: CAGAAGGGTAAGAGAGGGCAAGAGTGAGCAAGAGAT...TCTGACCATGCCCTTTCCTGCCTCAGATTTCAGCTTAAATTTTGCCTCCTCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp GGCATGGTCAGAGAACTGAAAGGAGTTCCATATGGCTACAGCACAATGATGGCGAGCAAGTGCACAAGGTaGGAGACAAAGAAACCAGTT +
Preference number: 5 (lower is better)
Translates to: GMVRELKGVPYGYSTMMASKCTR*ETKKPV
Trigger: AACTGGTTTCTTTGTCTCCAACCTTGTGCACTTGCT...CGCCATCATTGTGCTGTAGCCATATGGAACTCCTTTCAGTTCTCTGACCATGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp TGGATTGTGAGAGACAGGCCAGTAGGCAGGCAAATATATAGCTCTAAAGTAAAGGCGGCTCACACTCCTTaGCTTTCTTTGAGTCCGGAT +
Preference number: 5 (lower is better)
Translates to: WIVRDRPVGRQIYSSKVKAAHTP*LSLSPD
Trigger: ATCCGGACTCAAAGAAAGCAAAGGAGTGTGAGCCGC...CTTTACTTTAGAGCTATATATTTGCCTGCCTACTGGCCTGTCTCTCACAATCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp AGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATATGCAGAATGAAGAAAGGGCAGAACTGTCCTTaGGTGGTCCAGGAGATACTG +
Preference number: 5 (lower is better)
Translates to: SPLVLGRNPRERICRMKKGQNCP*VVQEIL
Trigger: CAGTATCTCCTGGACCACCAAAGGACAGTTCTGCCC...TTTCTTCATTCTGCATATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp GTTATAGCAGCCCAAACGGACTTAAATACATACTCTCTCTACAACTCAGCTTTCAGGGACCAACTGAACTaGAACCTTCCACCACCTGCC +
Preference number: 5 (lower is better)
Translates to: VIAAQTDLNTYSLYNSAFRDQLN*NLPPPA
Trigger: GGCAGGTGGTGGAAGGTTCAAGTTCAGTTGGTCCCT...GAAAGCTGAGTTGTAGAGAGAGTATGTATTTAAGTCCGTTTGGGCTGCTATAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp GGCATGGTCAGAGAACTGAAAGGAGTTCCATATGGCTACAGCACAATGATGGCGGCTTCCTGCTATGGTTaGAATGCTACAAAAAGCATG +
Preference number: 5 (lower is better)
Translates to: GMVRELKGVPYGYSTMMAASCYG*NATKSM
Trigger: CATGCTTTTTGTAGCATTCAAACCATAGCAGGAAGC...CGCCATCATTGTGCTGTAGCCATATGGAACTCCTTTCAGTTCTCTGACCATGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp AGTGCCCCCAATGTCTATGTGAGTGGGAGCGTATCTCAGGCAGAGGAAAAGCTCAAATGCCTTTATTCTTaGGCCCTTCAACTAACTGAT +
Preference number: 5 (lower is better)
Translates to: SAPNVYVSGSVSQAEEKLKCLYS*ALQLTD
Trigger: ATCAGTTAGTTGAAGGGCCAAAGAATAAAGGCATTT...GAGCTTTTCCTCTGCCTGAGATACGCTCCCACTCACATAGACATTGGGGGCACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp AGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATATGCAGAATGAAGAAACTTCAGATGGGGAGTTaGGGAAGGCATCTCTCTGAG +
Preference number: 5 (lower is better)
Translates to: SPLVLGRNPRERICRMKKLQMGS*GRHLSE
Trigger: CTCAGAGAGATGCCTTCCCAAACTCCCCATCTGAAG...TTTCTTCATTCTGCATATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp GCTATTCCTCCTAAGATTTTTCAGGTAGCCAAGTCACCCACCAAGATACTGTTTATCTCTTGCTCACTCTaGCCCTCTCTTACCCTTCTG +
Preference number: 5 (lower is better)
Translates to: AIPPKIFQVAKSPTKILFISCSL*PSLTLL
Trigger: CAGAAGGGTAAGAGAGGGCAAGAGTGAGCAAGAGAT...AAACAGTATCTTGGTGGGTGACTTGGCTACCTGAAAAATCTTAGGAGGAATAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp GTTATAGCAGCCCAAACGGACTTAAATACATACTCTCTCTACAACTCAGCTTTCGATCTAAGTTCTGGCTaGGCTCAGGTGCCTGCTATC +
Preference number: 5 (lower is better)
Translates to: VIAAQTDLNTYSLYNSAFDLSSG*AQVPAI
Trigger: GATAGCAGGCACCTGAGCCAAGCCAGAACTTAGATC...GAAAGCTGAGTTGTAGAGAGAGTATGTATTTAAGTCCGTTTGGGCTGCTATAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp GCCGTCAAAGATTCTCCACTTAGTTCAGGATCAGGAATAGAATCAGCTCCAGGACATCGAAAAGCTGTTTaGTGGACCATCACCAACCAA +
Preference number: 5 (lower is better)
Translates to: AVKDSPLSSGSGIESAPGHRKAV*WTITNQ
Trigger: TTGGTTGGTGATGGTCCACAAAACAGCTTTTCGATG...TCCTGGAGCTGATTCTATTCCTGATCCTGAACTAAGTGGAGAATCTTTGACGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000431754.1
CDS-3UTR CAA 90 bp CCCAAGACTACAGACCTGAAATTTAAGCCCAATACGGCAGGCTCAAAAACTCTGACTCCTTTGCTTTCTTaGAGTCCGGATCAAACCTTT +
Preference number: 5 (lower is better)
Translates to: PKTTDLKFKPNTAGSKTLTPLLS*SPDQTF
Trigger: AAAGGTTTGATCCGGACTCAAAGAAAGCAAAGGAGT...CAGAGTTTTTGAGCCTGCCGTATTGGGCTTAAATTTCAGGTCTGTAGTCTTGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp AGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATATGCAGAATGAAGAAATCGCTGACGAATCTCTaGTCCAGGTCTTGCAGTTAC +
Preference number: 5 (lower is better)
Translates to: SPLVLGRNPRERICRMKKSLTNL*SRSCSY
Trigger: GTAACTGCAAGACCTGGACAAGAGATTCGTCAGCGA...TTTCTTCATTCTGCATATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp TCCAGAACTGTGAGCCAAATAAATTTTTGTTCATCACGTTACCCAGTCTGTGGTTCGCTGACGAATCTCTaGTCCAGGTCTTGCAGTTAC +
Preference number: 5 (lower is better)
Translates to: SRTVSQINFCSSRYPVCGSLTNL*SRSCSY
Trigger: GTAACTGCAAGACCTGGACAAGAGATTCGTCAGCGA...ACCACAGACTGGGTAACGTGATGAACAAAAATTTATTTGGCTCACAGTTCTGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp TGGATTGTGAGAGACAGGCCAGTAGGCAGGCAAATATATAGCTCTAAAGTAAAGCAGATGGTAAGTCCTTaGGTGTTGGGAAGAAACCCT +
Preference number: 5 (lower is better)
Translates to: WIVRDRPVGRQIYSSKVKQMVSP*VLGRNP
Trigger: AGGGTTTCTTCCCAACACCAAAGGACTTACCATCTG...CTTTACTTTAGAGCTATATATTTGCCTGCCTACTGGCCTGTCTCTCACAATCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp TCTGAGGAGGCAAAATTTAAGCTGAAATCTGAGGCAGGAAAGGGCATGGTCAGAGCAAAATTTCCAAACTaGGGTTCCAAGTGGAACGAT +
Preference number: 5 (lower is better)
Translates to: SEEAKFKLKSEAGKGMVRAKFPN*GSKWND
Trigger: ATCGTTCCACTTGGAACCCAAGTTTGGAAATTTTGC...TCTGACCATGCCCTTTCCTGCCTCAGATTTCAGCTTAAATTTTGCCTCCTCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp TCCAGAACTGTGAGCCAAATAAATTTTTGTTCATCACGTTACCCAGTCTGTGGTTGTAATCCCAGCACTTaGAGAGGTCGAGGTAGACAG +
Preference number: 5 (lower is better)
Translates to: SRTVSQINFCSSRYPVCGCNPST*RGRGRQ
Trigger: CTGTCTACCTCGACCTCTCAAAGTGCTGGGATTACA...ACCACAGACTGGGTAACGTGATGAACAAAAATTTATTTGGCTCACAGTTCTGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000544803.5
CDS-3UTR CAA 90 bp TCTGAGGAGGCAAAATTTAAGCTGAAATCTGAGGCAGGAAAGGGCATGGTCAGAACTATAAATATCCAGTaGAAGGCACGTGGAAGCATT +
Preference number: 5 (lower is better)
Translates to: SEEAKFKLKSEAGKGMVRTINIQ*KARGSI
Trigger: AATGCTTCCACGTGCCTTCAACTGGATATTTATAGT...TCTGACCATGCCCTTTCCTGCCTCAGATTTCAGCTTAAATTTTGCCTCCTCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp GTTATAGCAGCCCAAACGGACTTAAATACATACTCTCTCTACAACTCAGCTTTCGAGTTTATAGGTGACTaGCCCAAGACTACAGACCTG +
Preference number: 5 (lower is better)
Translates to: VIAAQTDLNTYSLYNSAFEFIGD*PKTTDL
Trigger: CAGGTCTGTAGTCTTGGGCAAGTCACCTATAAACTC...GAAAGCTGAGTTGTAGAGAGAGTATGTATTTAAGTCCGTTTGGGCTGCTATAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp TTAAGCCCAATACGGCAGGCTCAAAAACTCTGGTTACTATACCGGATGTCCCAGGAGCCAAATAAATTTTaGTTCATCACGTTACCCAGT +
Preference number: 5 (lower is better)
Translates to: LSPIRQAQKLWLLYRMSQEPNKF*FITLPS
Trigger: ACTGGGTAACGTGATGAACAAAAATTTATTTGGCTC...CTGGGACATCCGGTATAGTAACCAGAGTTTTTGAGCCTGCCGTATTGGGCTTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp GCTATTCCTCCTAAGATTTTTCAGGTAGCCAAGTCACCCACCAAGATACTGTTTAGCAAGTGCACAAGGTaGGAGACAAAGAAACCAGTT +
Preference number: 5 (lower is better)
Translates to: AIPPKIFQVAKSPTKILFSKCTR*ETKKPV
Trigger: AACTGGTTTCTTTGTCTCCAACCTTGTGCACTTGCT...AAACAGTATCTTGGTGGGTGACTTGGCTACCTGAAAAATCTTAGGAGGAATAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp GCTATTCCTCCTAAGATTTTTCAGGTAGCCAAGTCACCCACCAAGATACTGTTTCTAGAACTTCTACAGTaGAAGGTTTTGTCCTCCATC +
Preference number: 5 (lower is better)
Translates to: AIPPKIFQVAKSPTKILFLELLQ*KVLSSI
Trigger: GATGGAGGACAAAACCTTCAACTGTAGAAGTTCTAG...AAACAGTATCTTGGTGGGTGACTTGGCTACCTGAAAAATCTTAGGAGGAATAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp GCCGTCAAAGATTCTCCACTTAGTTCAGGATCAGGAATAGAATCAGCTCCAGGATCTTCATTAAACTGGTaGTCTGATGAAAGCACACTT +
Preference number: 5 (lower is better)
Translates to: AVKDSPLSSGSGIESAPGSSLNW*SDESTL
Trigger: AAGTGTGCTTTCATCAGACAACCAGTTTAATGAAGA...TCCTGGAGCTGATTCTATTCCTGATCCTGAACTAAGTGGAGAATCTTTGACGGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000431754.1
CDS-3UTR CAA 90 bp CCCAAGACTACAGACCTGAAATTTAAGCCCAATACGGCAGGCTCAAAAACTCTGTCTTCATTAAACTGGTaGTCTGATGAAAGCACACTT +
Preference number: 5 (lower is better)
Translates to: PKTTDLKFKPNTAGSKTLSSLNW*SDESTL
Trigger: AAGTGTGCTTTCATCAGACAACCAGTTTAATGAAGA...CAGAGTTTTTGAGCCTGCCGTATTGGGCTTAAATTTCAGGTCTGTAGTCTTGGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp GCTATTCCTCCTAAGATTTTTCAGGTAGCCAAGTCACCCACCAAGATACTGTTTTCTGTAGCTGGTATTTaGTCATCTGTCTGCTCTGTA +
Preference number: 5 (lower is better)
Translates to: AIPPKIFQVAKSPTKILFSVAGI*SSVCSV
Trigger: TACAGAGCAGACAGATGACAAAATACCAGCTACAGA...AAACAGTATCTTGGTGGGTGACTTGGCTACCTGAAAAATCTTAGGAGGAATAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp AAAGATTCTCCACTTAGTTCAGGATCAGGAATAGAATCAGCTCCAGGAACTGTGTCTGTAGCTGGTATTTaGTCATCTGTCTGCTCTGTA +
Preference number: 5 (lower is better)
Translates to: KDSPLSSGSGIESAPGTVSVAGI*SSVCSV
Trigger: TACAGAGCAGACAGATGACAAAATACCAGCTACAGA...CACAGTTCCTGGAGCTGATTCTATTCCTGATCCTGAACTAAGTGGAGAATCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000431754.1
CDS-3UTR CAA 90 bp CTTAGTTCAGGATCAGGAATAGAATCAGCTCCAGGAACTGTGGAGTTGGTTTCATGCTTTTTCAATCACTaGGTTTGTCTGTTCTGTAGC +
Preference number: 5 (lower is better)
Translates to: LSSGSGIESAPGTVELVSCFFNH*VCLFCS
Trigger: GCTACAGAACAGACAAACCAAGTGATTGAAAAAGCA...TGAAACCAACTCCACAGTTCCTGGAGCTGATTCTATTCCTGATCCTGAACTAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000431754.1
CDS-3UTR CAA 90 bp TCTGAGGAGGCAAAATTTAAGCTGAAATCTGAGGCAGGAAAGGGCATGGTCAGAAGAAGGCAATCATGTTaGCTTACTTTTAGAATGGAC +
Preference number: 5 (lower is better)
Translates to: SEEAKFKLKSEAGKGMVRRRQSC*LTFRMD
Trigger: GTCCATTCTAAAAGTAAGCAAACATGATTGCCTTCT...TCTGACCATGCCCTTTCCTGCCTCAGATTTCAGCTTAAATTTTGCCTCCTCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp CAGCAATGGGGATCAAATTTCAACATGAGATTTGCAGGGGTCAAACAAACCACAATGCTGACACCAACATaGAGAGGCAGTGTAAAATTC +
Preference number: 5 (lower is better)
Translates to: QQWGSNFNMRFAGVKQTTMLTPT*RGSVKF
Trigger: GAATTTTACACTGCCTCTCAATGTTGGTGTCAGCAT...TGTGGTTTGTTTGACCCCTGCAAATCTCATGTTGAAATTTGATCCCCATTGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp TGGATTGTGAGAGACAGGCCAGTAGGCAGGCAAATATATAGCTCTAAAGTAAAGATGCTGACACCAACATaGAGAGGCAGTGTAAAATTC +
Preference number: 5 (lower is better)
Translates to: WIVRDRPVGRQIYSSKVKMLTPT*RGSVKF
Trigger: GAATTTTACACTGCCTCTCAATGTTGGTGTCAGCAT...CTTTACTTTAGAGCTATATATTTGCCTGCCTACTGGCCTGTCTCTCACAATCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp TCTGAGGAGGCAAAATTTAAGCTGAAATCTGAGGCAGGAAAGGGCATGGTCAGAAAATGCCTTTATTCTTaGGCCCTTCAACTAACTGAT +
Preference number: 5 (lower is better)
Translates to: SEEAKFKLKSEAGKGMVRKCLYS*ALQLTD
Trigger: ATCAGTTAGTTGAAGGGCCAAAGAATAAAGGCATTT...TCTGACCATGCCCTTTCCTGCCTCAGATTTCAGCTTAAATTTTGCCTCCTCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp TCTGAGGAGGCAAAATTTAAGCTGAAATCTGAGGCAGGAAAGGGCATGGTCAGAACAATCATCTCTACCTaGGTTCATCTTTACACAAGT +
Preference number: 5 (lower is better)
Translates to: SEEAKFKLKSEAGKGMVRTIIST*VHLYTS
Trigger: ACTTGTGTAAAGATGAACCAAGGTAGAGATGATTGT...TCTGACCATGCCCTTTCCTGCCTCAGATTTCAGCTTAAATTTTGCCTCCTCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp AGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATATGCAGAATGAAGAAAACTCCTTTGCTTTCTTaGAGTCCGGATCAAACCTTT +
Preference number: 5 (lower is better)
Translates to: SPLVLGRNPRERICRMKKTPLLS*SPDQTF
Trigger: AAAGGTTTGATCCGGACTCAAAGAAAGCAAAGGAGT...TTTCTTCATTCTGCATATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp GTTATAGCAGCCCAAACGGACTTAAATACATACTCTCTCTACAACTCAGCTTTCTCTGTAGCTGGTATTTaGTCATCTGTCTGCTCTGTA +
Preference number: 5 (lower is better)
Translates to: VIAAQTDLNTYSLYNSAFSVAGI*SSVCSV
Trigger: TACAGAGCAGACAGATGACAAAATACCAGCTACAGA...GAAAGCTGAGTTGTAGAGAGAGTATGTATTTAAGTCCGTTTGGGCTGCTATAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp GCTATTCCTCCTAAGATTTTTCAGGTAGCCAAGTCACCCACCAAGATACTGTTTACTATAAATATCCAGTaGAAGGCACGTGGAAGCATT +
Preference number: 5 (lower is better)
Translates to: AIPPKIFQVAKSPTKILFTINIQ*KARGSI
Trigger: AATGCTTCCACGTGCCTTCAACTGGATATTTATAGT...AAACAGTATCTTGGTGGGTGACTTGGCTACCTGAAAAATCTTAGGAGGAATAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp AGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATATGCAGAATGAAGAAAGCTTCCTGCTATGGTTaGAATGCTACAAAAAGCATG +
Preference number: 5 (lower is better)
Translates to: SPLVLGRNPRERICRMKKASCYG*NATKSM
Trigger: CATGCTTTTTGTAGCATTCAAACCATAGCAGGAAGC...TTTCTTCATTCTGCATATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp GAGAGACAGATGGTAAGTCCTTTGGTGTTGGGAAGAAACCCTAGGGAAAGAATAACAATCATCTCTACCTaGGTTCATCTTTACACAAGT +
Preference number: 5 (lower is better)
Translates to: ERQMVSPLVLGRNPRERITIIST*VHLYTS
Trigger: ACTTGTGTAAAGATGAACCAAGGTAGAGATGATTGT...TATTCTTTCCCTAGGGTTTCTTCCCAACACCAAAGGACTTACCATCTGTCTCTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp GTTATAGCAGCCCAAACGGACTTAAATACATACTCTCTCTACAACTCAGCTTTCTGCTTTTTCAATCACTaGGTTTGTCTGTTCTGTAGC +
Preference number: 5 (lower is better)
Translates to: VIAAQTDLNTYSLYNSAFCFFNH*VCLFCS
Trigger: GCTACAGAACAGACAAACCAAGTGATTGAAAAAGCA...GAAAGCTGAGTTGTAGAGAGAGTATGTATTTAAGTCCGTTTGGGCTGCTATAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp GCTATTCCTCCTAAGATTTTTCAGGTAGCCAAGTCACCCACCAAGATACTGTTTGAGCCAAATAAATTTTaGTTCATCACGTTACCCAGT +
Preference number: 5 (lower is better)
Translates to: AIPPKIFQVAKSPTKILFEPNKF*FITLPS
Trigger: ACTGGGTAACGTGATGAACAAAAATTTATTTGGCTC...AAACAGTATCTTGGTGGGTGACTTGGCTACCTGAAAAATCTTAGGAGGAATAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp TCCAGAACTGTGAGCCAAATAAATTTTTGTTCATCACGTTACCCAGTCTGTGGTTCTTCATTAAACTGGTaGTCTGATGAAAGCACACTT +
Preference number: 5 (lower is better)
Translates to: SRTVSQINFCSSRYPVCGSSLNW*SDESTL
Trigger: AAGTGTGCTTTCATCAGACAACCAGTTTAATGAAGA...ACCACAGACTGGGTAACGTGATGAACAAAAATTTATTTGGCTCACAGTTCTGGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS-3UTR CAA 90 bp GTTATAGCAGCCCAAACGGACTTAAATACATACTCTCTCTACAACTCAGCTTTCAGAAGGCAATCATGTTaGCTTACTTTTAGAATGGAC +
Preference number: 5 (lower is better)
Translates to: VIAAQTDLNTYSLYNSAFRRQSC*LTFRMD
Trigger: GTCCATTCTAAAAGTAAGCAAACATGATTGCCTTCT...GAAAGCTGAGTTGTAGAGAGAGTATGTATTTAAGTCCGTTTGGGCTGCTATAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000272748.9
ENST00000544803.5
CDS CCA 72 bp ACTGTCCTTTGGTGGTCCAGGAGATACTGGAACTTGTaGAGGAGGGCCCTGGTTAGGGCTTGCTGGTGTTGG +
Preference number: 6 (lower is better)
Translates to: TVLWWSRRYWNL*RRALVRACWCW
Trigger: CCAACACCAGCAAGCCCTAACCAGGGCCCTCCTCCACAAGTTCCAGTATCTCCTGGACCACCAAAGGACAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000272748.9
ENST00000409660.5
ENST00000544803.5
CDS CAA 72 bp TCCTTTCTGGGGGTCCACCAGGGGCAGAACTGTCCTTaGGTGGTCCAGGAGATACTGGAACTTGTGGAGGAG +
Preference number: 6 (lower is better)
Translates to: SFLGVHQGQNCP*VVQEILELVEE
Trigger: CTCCTCCACAAGTTCCAGTATCTCCTGGACCACCAAAGGACAGTTCTGCCCCTGGTGGACCCCCAGAAAGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000272748.9
ENST00000409660.5
ENST00000544803.5
CDS CCA 72 bp TGGAACTTGTGGAGGAGGGCCCTGGTTAGGGCTTGCTaGTGTTGGAGAAAGGTTTCTTTGAGCTGCAGTTCG +
Preference number: 6 (lower is better)
Translates to: WNLWRRALVRAC*CWRKVSLSCSS
Trigger: CGAACTGCAGCTCAAAGAAACCTTTCTCCAACACCAGCAAGCCCTAACCAGGGCCCTCCTCCACAAGTTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000272748.9
ENST00000409660.5
ENST00000544803.5
CDS CCA 72 bp GGTCCAGGAGATACTGGAACTTGTGGAGGAGGGCCCTaGTTAGGGCTTGCTGGTGTTGGAGAAAGGTTTCTT +
Preference number: 6 (lower is better)
Translates to: GPGDTGTCGGGP*LGLAGVGERFL
Trigger: AAGAAACCTTTCTCCAACACCAGCAAGCCCTAACCAGGGCCCTCCTCCACAAGTTCCAGTATCTCCTGGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000272748.9
ENST00000409660.5
ENST00000544803.5
CDS CAA 90 bp AGGAGGGCCCTGGTTAGGGCTTGCTGGTGTTGGAGAAAGGTTTCTTaGAGCTGCAGTTCGCTGACGAATCTCTTGTCCAGGTCTTGCAGT +
Preference number: 6 (lower is better)
Translates to: RRALVRACWCWRKVS*SCSSLTNLLSRSCS
Trigger: ACTGCAAGACCTGGACAAGAGATTCGTCAGCGAACTGCAGCTCAAAGAAACCTTTCTCCAACACCAGCAAGCCCTAACCAGGGCCCTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000272748.9
ENST00000409660.5
ENST00000544803.5
CDS CCA 72 bp TCCTTTGCTTTTAAAGCCTGTTCTGCCAAGTCTCGCTaGAGAAGGAAACCCCTGAAACTGGTCCTGGTGGTC +
Preference number: 6 (lower is better)
Translates to: SFAFKACSAKSR*RRKPLKLVLVV
Trigger: GACCACCAGGACCAGTTTCAGGGGTTTCCTTCTCCAGCGAGACTTGGCAGAACAGGCTTTAAAAGCAAAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000445472.1
ENST00000466445.1
CDS CAA 72 bp CTGGTTAGGGCTTGCTGGTGTTGGAGAAAGGTTTCTTaGAGCTGCAGTTCGCTGACGAATCTCTTGTCCAGG +
Preference number: 6 (lower is better)
Translates to: LVRACWCWRKVS*SCSSLTNLLSR
Trigger: CCTGGACAAGAGATTCGTCAGCGAACTGCAGCTCAAAGAAACCTTTCTCCAACACCAGCAAGCCCTAACCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000272748.9
ENST00000409660.5
ENST00000544803.5
CDS GCA 72 bp GGCAAGGGACCAACTGAACTTGAACCTTCCACCACCTaGCTCTTCTCAAAACTAAACTCAGGAAGTCTTGGA +
Preference number: 6 (lower is better)
Translates to: GKGPTELEPSTT*LFSKLNSGSLG
Trigger: TCCAAGACTTCCTGAGTTTAGTTTTGAGAAGAGGCAGGTGGTGGAAGGTTCAAGTTCAGTTGGTCCCTTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000272748.9
ENST00000409660.5
ENST00000431754.1
ENST00000475515.1
ENST00000479012.1
ENST00000544803.5
CDS CAA 72 bp TTTGTAGAAACTGGGCACAATGATAAATATCATCAATaGTCCAAAGGAATTCACAGCTGCAAGAAGCGGGCG +
Preference number: 6 (lower is better)
Translates to: FVETGHNDKYHQ*SKGIHSCKKRA
Trigger: CGCCCGCTTCTTGCAGCTGTGAATTCCTTTGGACAATTGATGATATTTATCATTGTGCCCAGTTTCTACAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000272748.9
ENST00000392540.6
ENST00000409660.5
ENST00000483230.5
ENST00000544803.5
CDS CAA 72 bp GCAATAACTGACATCAGTAAGACTATAAATATCCAGTaGAAGGCACGTGGAAGCATTTACTACTCTGCCGTC +
Preference number: 6 (lower is better)
Translates to: AITDISKTINIQ*KARGSIYYSAV
Trigger: GACGGCAGAGTAGTAAATGCTTCCACGTGCCTTCAACTGGATATTTATAGTCTTACTGATGTCAGTTATTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000272748.9
ENST00000409660.5
ENST00000544803.5