Pregenerated sensors for LNCNEF (Homo sapiens)
Ensembl gene IDs: ENSG00000237396Ensembl transcript IDs: ENST00000422494.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCACCTTCTCTAGTTGCCAGAGCCCGCTTCTCCACCCTAAATAACTaGGACTGCGGCAGAGGCATTTGGGTTGGTTTAAGACGGCAGTAT | + |
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Preference number: 5 (lower is better) Translates to: PPSLVARARFSTLNN*DCGRGIWVGLRRQY Trigger: ATACTGCCGTCTTAAACCAACCCAAATGCCTCTGCCGCAGTCGCAGTTATTTAGGGTGGAGAAGCGGGCTCTGGCAACTAGAGAAGGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422494.1 |
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| CDS GCA 90 bp | CCAGGCCATCCAGGTCTCCTAGGCCTTCATCTTGCTGGAACAATCTaGGTTCCCCTAGCAAAAGTCCTCCCTAGAGCTCTCTTTGTCACA | + |
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Preference number: 5 (lower is better) Translates to: PGHPGLLGLHLAGTI*VPLAKVLPRALFVT Trigger: TGTGACAAAGAGAGCTCTAGGGAGGACTTTTGCTAGGGGAACGCAGATTGTTCCAGCAAGATGAAGGCCTAGGAGACCTGGATGGCCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000422494.1 |
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| CDS GCA 90 bp | TCTCTAGTTGCCAGAGCCCGCTTCTCCACCCTAAATAACTGCGACTaGGGCAGAGGCATTTGGGTTGGTTTAAGACGGCAGTATATCCCT | + |
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Preference number: 5 (lower is better) Translates to: SLVARARFSTLNNCD*GRGIWVGLRRQYIP Trigger: AGGGATATACTGCCGTCTTAAACCAACCCAAATGCCTCTGCCGCAGTCGCAGTTATTTAGGGTGGAGAAGCGGGCTCTGGCAACTAGAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422494.1 |
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| CDS CCA 90 bp | GTTGTGCCGAAGGTTGGGTTTCAGTTATGGATTGTCCATCTTTTATaGGACTTCTCAGTGGATGGATTGAGCAGTTGCGGATTCCACTCC | + |
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Preference number: 5 (lower is better) Translates to: VVPKVGFQLWIVHLL*DFSVDGLSSCGFHS Trigger: GGAGTGGAATCCGCAACTGCTCAATCCATCCACTGAGAAGTCCCATAAAAGATGGACAATCCATAACTGAAACCCAACCTTCGGCACAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000422494.1 |
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| CDS CCA 90 bp | TTCTGCATATTGTTTAGGGGAAGGAGACAGACTCTGTCCTCTGGGTaGGGTGCCTTTAAGATGGATCTGGCACACAGATCTCTTGCTTTA | + |
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Preference number: 5 (lower is better) Translates to: FCILFRGRRQTLSSG*GAFKMDLAHRSLAL Trigger: TAAAGCAAGAGATCTGTGTGCCAGATCCATCTTAAAGGCACCCCACCCAGAGGACAGAGTCTGTCTCCTTCCCCTAAACAATATGCAGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000422494.1 |
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| CDS CCA 90 bp | GTTTCAGTTATGGATTGTCCATCTTTTATGGGACTTCTCAGTGGATaGATTGAGCAGTTGCGGATTCCACTCCCATCTGTGGAGGTCTTA | + |
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Preference number: 5 (lower is better) Translates to: VSVMDCPSFMGLLSG*IEQLRIPLPSVEVL Trigger: TAAGACCTCCACAGATGGGAGTGGAATCCGCAACTGCTCAATCCATCCACTGAGAAGTCCCATAAAAGATGGACAATCCATAACTGAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000422494.1 |
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| CDS TCA 90 bp | AGTTATGGATTGTCCATCTTTTATGGGACTTCTCAGTGGATGGATTaGGCAGTTGCGGATTCCACTCCCATCTGTGGAGGTCTTAATTCT | + |
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Preference number: 5 (lower is better) Translates to: SYGLSIFYGTSQWMD*AVADSTPICGGLNS Trigger: AGAATTAAGACCTCCACAGATGGGAGTGGAATCCGCAACTGCTCAATCCATCCACTGAGAAGTCCCATAAAAGATGGACAATCCATAACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000422494.1 |
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| CDS CCA 90 bp | ATCTCTTGCTTTATGCATGTAGAATTTGATCGTTGTGCCGAAGGTTaGGTTTCAGTTATGGATTGTCCATCTTTTATGGGACTTCTCAGT | + |
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Preference number: 5 (lower is better) Translates to: ISCFMHVEFDRCAEG*VSVMDCPSFMGLLS Trigger: ACTGAGAAGTCCCATAAAAGATGGACAATCCATAACTGAAACCCAACCTTCGGCACAACGATCAAATTCTACATGCATAAAGCAAGAGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000422494.1 |
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| CDS GCA 72 bp | GCCAGAGCCCGCTTCTCCACCCTAAATAACTGCGACTaGGGCAGAGGCATTTGGGTTGGTTTAAGACGGCAG | + |
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Preference number: 6 (lower is better) Translates to: ARARFSTLNNCD*GRGIWVGLRRQ Trigger: CTGCCGTCTTAAACCAACCCAAATGCCTCTGCCGCAGTCGCAGTTATTTAGGGTGGAGAAGCGGGCTCTGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422494.1 |
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| CDS CCA 72 bp | CCCAGGCCATCCAGGTCTCCTAGGCCTTCATCTTGCTaGAACAATCTGCGTTCCCCTAGCAAAAGTCCTCCC | + |
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Preference number: 6 (lower is better) Translates to: PRPSRSPRPSSC*NNLRSPSKSPP Trigger: GGGAGGACTTTTGCTAGGGGAACGCAGATTGTTCCAGCAAGATGAAGGCCTAGGAGACCTGGATGGCCTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000422494.1 |
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| CDS GCA 72 bp | CCAGGTCTCCTAGGCCTTCATCTTGCTGGAACAATCTaGGTTCCCCTAGCAAAAGTCCTCCCTAGAGCTCTC | + |
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Preference number: 6 (lower is better) Translates to: PGLLGLHLAGTI*VPLAKVLPRAL Trigger: GAGAGCTCTAGGGAGGACTTTTGCTAGGGGAACGCAGATTGTTCCAGCAAGATGAAGGCCTAGGAGACCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000422494.1 |
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| CDS GCA 72 bp | ACACCCAGGCCATCCAGGTCTCCTAGGCCTTCATCTTaGTGGAACAATCTGCGTTCCCCTAGCAAAAGTCCT | + |
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Preference number: 6 (lower is better) Translates to: TPRPSRSPRPSS*WNNLRSPSKSP Trigger: AGGACTTTTGCTAGGGGAACGCAGATTGTTCCAGCAAGATGAAGGCCTAGGAGACCTGGATGGCCTGGGTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000422494.1 |
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| CDS GCA 72 bp | CTAGTTGCCAGAGCCCGCTTCTCCACCCTAAATAACTaGGACTGCGGCAGAGGCATTTGGGTTGGTTTAAGA | + |
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Preference number: 6 (lower is better) Translates to: LVARARFSTLNN*DCGRGIWVGLR Trigger: TCTTAAACCAACCCAAATGCCTCTGCCGCAGTCGCAGTTATTTAGGGTGGAGAAGCGGGCTCTGGCAACTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422494.1 |
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| CDS TCA 72 bp | TTGTCCATCTTTTATGGGACTTCTCAGTGGATGGATTaGGCAGTTGCGGATTCCACTCCCATCTGTGGAGGT | + |
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Preference number: 6 (lower is better) Translates to: LSIFYGTSQWMD*AVADSTPICGG Trigger: ACCTCCACAGATGGGAGTGGAATCCGCAACTGCTCAATCCATCCACTGAGAAGTCCCATAAAAGATGGACAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000422494.1 |
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| CDS CCA 72 bp | TCCACCCTAAATAACTGCGACTGCGGCAGAGGCATTTaGGTTGGTTTAAGACGGCAGTATATCCCTCTGTTT | + |
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Preference number: 6 (lower is better) Translates to: STLNNCDCGRGI*VGLRRQYIPLF Trigger: AAACAGAGGGATATACTGCCGTCTTAAACCAACCCAAATGCCTCTGCCGCAGTCGCAGTTATTTAGGGTGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422494.1 |
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| CDS CAA 72 bp | ATTGTCCATCTTTTATGGGACTTCTCAGTGGATGGATaGAGCAGTTGCGGATTCCACTCCCATCTGTGGAGG | + |
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Preference number: 6 (lower is better) Translates to: IVHLLWDFSVDG*SSCGFHSHLWR Trigger: CCTCCACAGATGGGAGTGGAATCCGCAACTGCTCAATCCATCCACTGAGAAGTCCCATAAAAGATGGACAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000422494.1 |
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| CDS CCA 72 bp | CTCTGTCCTCTGGGTGGGGTGCCTTTAAGATGGATCTaGCACACAGATCTCTTGCTTTATGCATGTAGAATT | + |
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Preference number: 6 (lower is better) Translates to: LCPLGGVPLRWI*HTDLLLYACRI Trigger: AATTCTACATGCATAAAGCAAGAGATCTGTGTGCCAGATCCATCTTAAAGGCACCCCACCCAGAGGACAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000422494.1 |
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| CDS CCA 72 bp | TTTATGCATGTAGAATTTGATCGTTGTGCCGAAGGTTaGGTTTCAGTTATGGATTGTCCATCTTTTATGGGA | + |
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Preference number: 6 (lower is better) Translates to: FMHVEFDRCAEG*VSVMDCPSFMG Trigger: TCCCATAAAAGATGGACAATCCATAACTGAAACCCAACCTTCGGCACAACGATCAAATTCTACATGCATAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000422494.1 |
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