Pregenerated sensors for LNCAROD (Homo sapiens)
Ensembl gene IDs: ENSG00000231131Ensembl transcript IDs: ENST00000422763.1, ENST00000435813.6, ENST00000443523.2, ENST00000448017.2, ENST00000647908.1, ENST00000657963.1
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TGTCTGAGCTTCAGTTTTCATATCAGTACACTGGGCCTTCAGCCTTaGATGGCCAGAGCCCTCCTCCTTGGGTGTGTGGGTTTCCCTTTA | + |
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Preference number: 5 (lower is better) Translates to: CLSFSFHISTLGLQP*MARALLLGCVGFPL Trigger: TAAAGGGAAACCCACACACCCAAGGAGGAGGGCTCTGGCCATGCAAGGCTGAAGGCCCAGTGTACTGATATGAAAACTGAAGCTCAGACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657963.1 |
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| CDS TCA 90 bp | GGGCTGCTTGAAGGGTACAATGGCATCCTCATTACTGACTCAGGATaGTGTGATGGAGCATGCACTTACAAGAGTTGGACAACTCATATT | + |
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Preference number: 5 (lower is better) Translates to: GLLEGYNGILITDSG*CDGACTYKSWTTHI Trigger: AATATGAGTTGTCCAACTCTTGTAAGTGCATGCTCCATCACATCATCCTGAGTCAGTAATGAGGATGCCATTGTACCCTTCAAGCAGCCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422763.1 |
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| CDS TCA 90 bp | GCTGAGTTGAATCACCTTAAAAGACATCAGCATAATATGGATGTTTaGAGGCTCTTGAGATTCCTATCACACAGGCAAACATCAGTCCAG | + |
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Preference number: 5 (lower is better) Translates to: AELNHLKRHQHNMDV*RLLRFLSHRQTSVQ Trigger: CTGGACTGATGTTTGCCTGTGTGATAGGAATCTCAAGAGCCTTCAAACATCCATATTATGCTGATGTCTTTTAAGGTGATTCAACTCAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647908.1 |
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| CDS TCA 90 bp | CATGATCTCACTCAGTCTCACGGCTTCAAACAACATATGCTGAGTTaGATCACCTTAAAAGACATCAGCATAATATGGATGTTTGAAGGC | + |
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Preference number: 5 (lower is better) Translates to: HDLTQSHGFKQHMLS*ITLKDISIIWMFEG Trigger: GCCTTCAAACATCCATATTATGCTGATGTCTTTTAAGGTGATTCAACTCAGCATATGTTGTTTGAAGCCGTGAGACTGAGTGAGATCATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000422763.1 ENST00000647908.1 |
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| CDS CCA 72 bp | CTCAGCTCTGCACCGGCTGCCTGCCTCCCAAGTGAGTaGATTAACCTGTCCTGGCCTCTTCTGAGAACCACA | + |
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Preference number: 6 (lower is better) Translates to: LSSAPAACLPSE*INLSWPLLRTT Trigger: TGTGGTTCTCAGAAGAGGCCAGGACAGGTTAATCCACTCACTTGGGAGGCAGGCAGCCGGTGCAGAGCTGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647908.1 |
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| CDS CCA 72 bp | GTTTTCATATCAGTACACTGGGCCTTCAGCCTTGCATaGCCAGAGCCCTCCTCCTTGGGTGTGTGGGTTTCC | + |
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Preference number: 6 (lower is better) Translates to: VFISVHWAFSLA*PEPSSLGVWVS Trigger: GGAAACCCACACACCCAAGGAGGAGGGCTCTGGCCATGCAAGGCTGAAGGCCCAGTGTACTGATATGAAAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657963.1 |
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| CDS GCA 72 bp | TTCAGTTTTCATATCAGTACACTGGGCCTTCAGCCTTaGATGGCCAGAGCCCTCCTCCTTGGGTGTGTGGGT | + |
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Preference number: 6 (lower is better) Translates to: FSFHISTLGLQP*MARALLLGCVG Trigger: ACCCACACACCCAAGGAGGAGGGCTCTGGCCATGCAAGGCTGAAGGCCCAGTGTACTGATATGAAAACTGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657963.1 |
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| CDS CAA 90 bp | CTGTCTGAGCTTCAGTTTTCATATCAGTACACTGGGCCTTCAGCCTaGCATGGCCAGAGCCCTCCTCCTTGGGTGTGTGGGTTTCCCTTT | + |
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Preference number: 6 (lower is better) Translates to: LSELQFSYQYTGPSA*HGQSPPPWVCGFPF Trigger: AAAGGGAAACCCACACACCCAAGGAGGAGGGCTCTGGCCATGCAAGGCTGAAGGCCCAGTGTACTGATATGAAAACTGAAGCTCAGACAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657963.1 |
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| CDS CCA 72 bp | CTGGAGAGAAATGTGGGTACCTGCCTCCCAAGTGAGTaGATTAACCTGTCCTGGCCTCTTCTGAGAACCACA | + |
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Preference number: 6 (lower is better) Translates to: LERNVGTCLPSE*INLSWPLLRTT Trigger: TGTGGTTCTCAGAAGAGGCCAGGACAGGTTAATCCACTCACTTGGGAGGCAGGTACCCACATTTCTCTCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657963.1 |
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| CDS CCA 72 bp | TGGCCTCTTCTGAGAACCACAGCACTGCAAATCCAGTaGTTAAGAAAGCAACGTCGCCTCTTCTGTCTGAGC | + |
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Preference number: 6 (lower is better) Translates to: WPLLRTTALQIQ*LRKQRRLFCLS Trigger: GCTCAGACAGAAGAGGCGACGTTGCTTTCTTAACCACTGGATTTGCAGTGCTGTGGTTCTCAGAAGAGGCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000443523.2 ENST00000448017.2 ENST00000657963.1 |
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| CDS CCA 72 bp | TCCTTTGCTGGCTCTTCCTCATCTTCCAGTTTACAATaGAGTGTCTCAGGGCTCCGTCTTCAGACTTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: SFAGSSSSSSLQ*SVSGLRLQTSS Trigger: GGAAGAAGTCTGAAGACGGAGCCCTGAGACACTCCATTGTAAACTGGAAGATGAGGAAGAGCCAGCAAAGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000422763.1 ENST00000435813.6 ENST00000647908.1 |
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| CDS CCA 72 bp | ATACCAGCTGTACATTCAACCTGCCTCCCAAGTGAGTaGATTAACCTGTCCTGGCCTCTTCTGAGAACCACA | + |
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Preference number: 6 (lower is better) Translates to: IPAVHSTCLPSE*INLSWPLLRTT Trigger: TGTGGTTCTCAGAAGAGGCCAGGACAGGTTAATCCACTCACTTGGGAGGCAGGTTGAATGTACAGCTGGTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000448017.2 |
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| CDS CAA 90 bp | ACTTCCTCCATGATCTCACTCAGTCTCACGGCTTCAAACAACATCTaGGCCTTTGTTCCCCTTCAGACAATCCTCATCGCAGTAGCCTGT | + |
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Preference number: 6 (lower is better) Translates to: TSSMISLSLTASNNI*AFVPLQTILIAVAC Trigger: ACAGGCTACTGCGATGAGGATTGTCTGAAGGGGAACAAAGGCCAAGATGTTGTTTGAAGCCGTGAGACTGAGTGAGATCATGGAGGAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000435813.6 |
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| CDS CAA 90 bp | TGGAGTTGTCTCAGTGTAGGAAGTTCCATAGCTAGTCTTCGTAGATaGGGGTTATCAGCAGTCTTCAAACTTGGGGGTCACAGCATCCCA | + |
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Preference number: 6 (lower is better) Translates to: WSCLSVGSSIASLRR*GLSAVFKLGGHSIP Trigger: TGGGATGCTGTGACCCCCAAGTTTGAAGACTGCTGATAACCCCAATCTACGAAGACTAGCTATGGAACTTCCTACACTGAGACAACTCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000422763.1 ENST00000435813.6 ENST00000647908.1 |
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| CDS CAA 72 bp | CTCAGTGTAGGAAGTTCCATAGCTAGTCTTCGTAGATaGGGGTTATCAGCAGTCTTCAAACTTGGGGGTCAC | + |
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Preference number: 6 (lower is better) Translates to: LSVGSSIASLRR*GLSAVFKLGGH Trigger: GTGACCCCCAAGTTTGAAGACTGCTGATAACCCCAATCTACGAAGACTAGCTATGGAACTTCCTACACTGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000422763.1 ENST00000435813.6 ENST00000647908.1 |
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| CDS CAA 72 bp | ATGATCTCACTCAGTCTCACGGCTTCAAACAACATCTaGGCCTTTGTTCCCCTTCAGACAATCCTCATCGCA | + |
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Preference number: 6 (lower is better) Translates to: MISLSLTASNNI*AFVPLQTILIA Trigger: TGCGATGAGGATTGTCTGAAGGGGAACAAAGGCCAAGATGTTGTTTGAAGCCGTGAGACTGAGTGAGATCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000435813.6 |
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| CDS TCA 72 bp | GAAGGGTACAATGGCATCCTCATTACTGACTCAGGATaGTGTGATGGAGCATGCACTTACAAGAGTTGGACA | + |
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Preference number: 6 (lower is better) Translates to: EGYNGILITDSG*CDGACTYKSWT Trigger: TGTCCAACTCTTGTAAGTGCATGCTCCATCACATCATCCTGAGTCAGTAATGAGGATGCCATTGTACCCTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422763.1 |
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| CDS CAA 90 bp | GCAGATGAAGAAACTGAGGTTAGTAAGCATCTCCAGCCAGGTGGTTaGATCCCAGAATACACCTTCTTCATGACGACAAAGCACCATTTT | + |
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Preference number: 6 (lower is better) Translates to: ADEETEVSKHLQPGG*IPEYTFFMTTKHHF Trigger: AAAATGGTGCTTTGTCGTCATGAAGAAGGTGTATTCTGGGATCAAACCACCTGGCTGGAGATGCTTACTAACCTCAGTTTCTTCATCTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647908.1 |
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| CDS CAA 90 bp | TCAGATGAAGAAACTGAGGTTAGTAAGCATCTCCAGCCAGGTGGTTaGATCCCAGAATACACCTTCTTCATGACGACAAAGCACCATTTT | + |
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Preference number: 6 (lower is better) Translates to: SDEETEVSKHLQPGG*IPEYTFFMTTKHHF Trigger: AAAATGGTGCTTTGTCGTCATGAAGAAGGTGTATTCTGGGATCAAACCACCTGGCTGGAGATGCTTACTAACCTCAGTTTCTTCATCTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000443523.2 ENST00000448017.2 |
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| CDS TCA 72 bp | GATATCATTTTTCATGAGGGAAATAGGAAATCATGCTaGGATACCACTCGCACCTTCCAGAAGAAGGCTAAA | + |
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Preference number: 6 (lower is better) Translates to: DIIFHEGNRKSC*DTTRTFQKKAK Trigger: TTTAGCCTTCTTCTGGAAGGTGCGAGTGGTATCTCAGCATGATTTCCTATTTCCCTCATGAAAAATGATATC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000657963.1 |
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| CDS TCA 72 bp | ACTGAATATACACCCTCTGAGAAGTTACTCTGGCATTaGATTAACCTGCACTGCTTTAACTTTTCCACTTTT | + |
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Preference number: 6 (lower is better) Translates to: TEYTPSEKLLWH*INLHCFNFSTF Trigger: AAAAGTGGAAAAGTTAAAGCAGTGCAGGTTAATTCAATGCCAGAGTAACTTCTCAGAGGGTGTATATTCAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000435813.6 |
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| CDS TCA 72 bp | AATCACCTTAAAAGACATCAGCATAATATGGATGTTTaGAGGCTCTTGAGATTCCTATCACACAGGCAAACA | + |
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Preference number: 6 (lower is better) Translates to: NHLKRHQHNMDV*RLLRFLSHRQT Trigger: TGTTTGCCTGTGTGATAGGAATCTCAAGAGCCTTCAAACATCCATATTATGCTGATGTCTTTTAAGGTGATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647908.1 |
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| CDS TCA 72 bp | AAAGACATCAGCATAATATGGATGTTTGAAGGCTCTTaGGATTCTATTATTATTAGCTCCAGCATGCAGAGA | + |
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Preference number: 6 (lower is better) Translates to: KDISIIWMFEGS*DSIIISSSMQR Trigger: TCTCTGCATGCTGGAGCTAATAATAATAGAATCTCAAGAGCCTTCAAACATCCATATTATGCTGATGTCTTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422763.1 |
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| CDS CCA 72 bp | AGTGTTGAATTGGCATGGGATGCATCAATAAACCAGTaGAATAGAATAGATAATTCATGCATACATTTGTAC | + |
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Preference number: 6 (lower is better) Translates to: SVELAWDASINQ*NRIDNSCIHLY Trigger: GTACAAATGTATGCATGAATTATCTATTCTATTCCACTGGTTTATTGATGCATCCCATGCCAATTCAACACT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657963.1 |
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