Pregenerated sensors for LMNB1-DT (Homo sapiens)

Ensembl gene IDs: ENSG00000251072

Ensembl transcript IDs: ENST00000509185.2

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CCACAGCCTTGCGGTGACTCCTGGCATGACCTGCAGGCTCCATTCTaGTCTGCTCCTCTCCACACCCAAAGAATGCAAGGCTGGAGCTCC	+
Preference number: 5 (lower is better) Translates to: PQPCGDSWHDLQAPF*SAPLHTQRMQGWSS Trigger: GGAGCTCCAGCCTTGCATTCTTTGGGTGTGGAGAGGAGCAGAGCAGAATGGAGCCTGCAGGTCATGCCAGGAGTCACCGCAAGGCTGTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000509185.2
CDS TCA 90 bp	GATTTAGGACTTTTGCTTCCTGAGGTCAGTGAGAACATTCATATCTaGTACTTAACTCCAGAAGAAGATTCTTGTTTAGTTATGAGAAAG	+
Preference number: 5 (lower is better) Translates to: DLGLLLPEVSENIHI*YLTPEEDSCLVMRK Trigger: CTTTCTCATAACTAAACAAGAATCTTCTTCTGGAGTTAAGTATCAGATATGAATGTTCTCACTGACCTCAGGAAGCAAAAGTCCTAAATC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000509185.2
CDS CAA 72 bp	TACACATTTTGTGGGTGCTACTGCAGCTTGTATGTGTaGGCAGCAGTTCCGCTTTATTTCCTGCTGATTTTT	+
Preference number: 6 (lower is better) Translates to: YTFCGCYCSLYV*AAVPLYFLLIF Trigger: AAAAATCAGCAGGAAATAAAGCGGAACTGCTGCCAACACATACAAGCTGCAGTAGCACCCACAAAATGTGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000509185.2
CDS CAA 72 bp	AATAGATACTACACATTTTGTGGGTGCTACTGCAGCTaGTATGTGTTGGCAGCAGTTCCGCTTTATTTCCTG	+
Preference number: 6 (lower is better) Translates to: NRYYTFCGCYCS*YVLAAVPLYFL Trigger: CAGGAAATAAAGCGGAACTGCTGCCAACACATACAAGCTGCAGTAGCACCCACAAAATGTGTAGTATCTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000509185.2
CDS CAA 72 bp	ATTAAGAAACGGATTAGGAACCGCCCATTAACACTGTaGGCAAATGATTTAAAATCAGGGTTGCTGGTTTTT	+
Preference number: 6 (lower is better) Translates to: IKKRIRNRPLTL*ANDLKSGLLVF Trigger: AAAAACCAGCAACCCTGATTTTAAATCATTTGCCAACAGTGTTAATGGGCGGTTCCTAATCCGTTTCTTAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000509185.2
CDS TCA 72 bp	CTTTTGCTTCCTGAGGTCAGTGAGAACATTCATATCTaGTACTTAACTCCAGAAGAAGATTCTTGTTTAGTT	+
Preference number: 6 (lower is better) Translates to: LLLPEVSENIHI*YLTPEEDSCLV Trigger: AACTAAACAAGAATCTTCTTCTGGAGTTAAGTATCAGATATGAATGTTCTCACTGACCTCAGGAAGCAAAAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000509185.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu