Pregenerated sensors for LIPM (Homo sapiens)

Ensembl gene IDs: ENSG00000173239

Ensembl transcript IDs: ENST00000404743.9, ENST00000539337.2

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	GATCGTCAGTGTCAGATGCTTCACAATACGGCCTCACACCGTCCCTaGGAAAGGTTGGTCTCCTCCTGCTGCATCAGATGGATGATTTCA	+
Preference number: 5 (lower is better) Translates to: DRQCQMLHNTASHRP*ERLVSSCCIRWMIS Trigger: TGAAATCATCCATCTGATGCAGCAGGAGGAGACCAACCTTTCCCAGGGACGGTGTGAGGCCGTATTGTGAAGCATCTGACACTGACGATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000404743.9 ENST00000539337.2
CDS TCA 90 bp	TCAGAGAGCAGCATTTTCACGTCTTCTGGATTTGAAAGCCAGTCCTaGCCTCCTGTCCACATTGCTGTAGGGACCGTCATATCTCTGACT	+
Preference number: 5 (lower is better) Translates to: SESSIFTSSGFESQS*PPVHIAVGTVISLT Trigger: AGTCAGAGATATGACGGTCCCTACAGCAATGTGGACAGGAGGTCAGGACTGGCTTTCAAATCCAGAAGACGTGAAAATGCTGCTCTCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000404743.9 ENST00000539337.2
CDS CCA 72 bp	TGTCAGATGCTTCACAATACGGCCTCACACCGTCCCTaGGAAAGGTTGGTCTCCTCCTGCTGCATCAGATGG	+
Preference number: 6 (lower is better) Translates to: CQMLHNTASHRP*ERLVSSCCIRW Trigger: CCATCTGATGCAGCAGGAGGAGACCAACCTTTCCCAGGGACGGTGTGAGGCCGTATTGTGAAGCATCTGACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000404743.9 ENST00000539337.2
CDS GCA 72 bp	TTGGAAATCCAGTTGCTAGCACCTCCAACTAGGCCATaGTGCAGTAACACCACAGGCCTGGAACCTGTCTTC	+
Preference number: 6 (lower is better) Translates to: LEIQLLAPPTRP*CSNTTGLEPVF Trigger: GAAGACAGGTTCCAGGCCTGTGGTGTTACTGCAGCATGGCCTAGTTGGAGGTGCTAGCAACTGGATTTCCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000404743.9 ENST00000539337.2
CDS CAA 72 bp	CTTCACAATACGGCCTCACACCGTCCCTGGGAAAGGTaGGTCTCCTCCTGCTGCATCAGATGGATGATTTCA	+
Preference number: 6 (lower is better) Translates to: LHNTASHRPWER*VSSCCIRWMIS Trigger: TGAAATCATCCATCTGATGCAGCAGGAGGAGACCAACCTTTCCCAGGGACGGTGTGAGGCCGTATTGTGAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000404743.9 ENST00000539337.2
CDS GCA 72 bp	GAAATCCAGTTGCTAGCACCTCCAACTAGGCCATGCTaGAGTAACACCACAGGCCTGGAACCTGTCTTCTTA	+
Preference number: 6 (lower is better) Translates to: EIQLLAPPTRPC*SNTTGLEPVFL Trigger: TAAGAAGACAGGTTCCAGGCCTGTGGTGTTACTGCAGCATGGCCTAGTTGGAGGTGCTAGCAACTGGATTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000404743.9 ENST00000539337.2
CDS CAA 90 bp	TGTCAGATGCTTCACAATACGGCCTCACACCGTCCCTGGGAAAGGTaGGTCTCCTCCTGCTGCATCAGATGGATGATTTCATTGTACATA	+
Preference number: 6 (lower is better) Translates to: CQMLHNTASHRPWER*VSSCCIRWMISLYI Trigger: TATGTACAATGAAATCATCCATCTGATGCAGCAGGAGGAGACCAACCTTTCCCAGGGACGGTGTGAGGCCGTATTGTGAAGCATCTGACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000404743.9 ENST00000539337.2
CDS TCA 72 bp	GGTGGAAAATGCAATAAAGCCCATGGTGGTGCCCTGTaGATAGCCGACATAATAGATCTTTTCCTGGCCCGT	+
Preference number: 6 (lower is better) Translates to: GGKCNKAHGGAL*IADIIDLFLAR Trigger: ACGGGCCAGGAAAAGATCTATTATGTCGGCTATTCACAGGGCACCACCATGGGCTTTATTGCATTTTCCACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000404743.9 ENST00000539337.2
CDS TCA 72 bp	AGCATTTTCACGTCTTCTGGATTTGAAAGCCAGTCCTaGCCTCCTGTCCACATTGCTGTAGGGACCGTCATA	+
Preference number: 6 (lower is better) Translates to: SIFTSSGFESQS*PPVHIAVGTVI Trigger: TATGACGGTCCCTACAGCAATGTGGACAGGAGGTCAGGACTGGCTTTCAAATCCAGAAGACGTGAAAATGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000404743.9 ENST00000539337.2
CDS TCA 72 bp	GGGAAAGGTTGGTCTCCTCCTGCTGCATCAGATGGATaGTTTCATTGTACATACGGTGAGGAGCATCCAAAC	+
Preference number: 6 (lower is better) Translates to: GKGWSPPAASDG*FHCTYGEEHPN Trigger: GTTTGGATGCTCCTCACCGTATGTACAATGAAATCATCCATCTGATGCAGCAGGAGGAGACCAACCTTTCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000404743.9 ENST00000539337.2
CDS TCA 72 bp	CCACGTGAGCCCATTCAGGAATATTCTTATGGTAGATaGGGTTGGTCACCTCAGAGAGCAGCATTTTCACGT	+
Preference number: 6 (lower is better) Translates to: PREPIQEYSYGR*GWSPQRAAFSR Trigger: ACGTGAAAATGCTGCTCTCTGAGGTGACCAACCTCATCTACCATAAGAATATTCCTGAATGGGCTCACGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000404743.9 ENST00000539337.2
CDS TCA 72 bp	CATTGTACATACGGTGAGGAGCATCCAAACCCCAGATaGAATCCACGTGAGCCCATTCAGGAATATTCTTAT	+
Preference number: 6 (lower is better) Translates to: HCTYGEEHPNPR*NPREPIQEYSY Trigger: ATAAGAATATTCCTGAATGGGCTCACGTGGATTTCATCTGGGGTTTGGATGCTCCTCACCGTATGTACAATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000404743.9 ENST00000539337.2
CDS GCA 72 bp	GCCTTGATGTTGGATGATTTCACTAATATTCATGAATaGTTCTGGGTCCACAGCTTTAGTTGGCATATGTAC	+
Preference number: 6 (lower is better) Translates to: ALMLDDFTNIHE*FWVHSFSWHMY Trigger: GTACATATGCCAACTAAAGCTGTGGACCCAGAAGCATTCATGAATATTAGTGAAATCATCCAACATCAAGGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000404743.9
CDS CAA 72 bp	GCAGCATATACACTTGCTCGGCTCATGTTCATATTGTaGGTGTTGAATCCACCCAGAAGTAACATGATATTA	+
Preference number: 6 (lower is better) Translates to: AAYTLARLMFIL*VLNPPRSNMIL Trigger: TAATATCATGTTACTTCTGGGTGGATTCAACACCAACAATATGAACATGAGCCGAGCAAGTGTATATGCTGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000404743.9 ENST00000539337.2
CDS CAA 72 bp	TATACACTTGCTCGGCTCATGTTCATATTGTTGGTGTaGAATCCACCCAGAAGTAACATGATATTACTACAA	+
Preference number: 6 (lower is better) Translates to: YTLARLMFILLV*NPPRSNMILLQ Trigger: TTGTAGTAATATCATGTTACTTCTGGGTGGATTCAACACCAACAATATGAACATGAGCCGAGCAAGTGTATA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000404743.9 ENST00000539337.2
CDS CAA 72 bp	ATCAAGAATCACCTGGCCACAAAGGTAAATAACAAGTaGTCTGAGAAATCTGGTCTGATACAGAAATTCTTT	+
Preference number: 6 (lower is better) Translates to: IKNHLATKVNNK*SEKSGLIQKFF Trigger: AAAGAATTTCTGTATCAGACCAGATTTCTCAGACAACTTGTTATTTACCTTTGTGGCCAGGTGATTCTTGAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000404743.9 ENST00000539337.2

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