Pregenerated sensors for LIPK (Homo sapiens)

Ensembl gene IDs: ENSG00000204021

Ensembl transcript IDs: ENST00000404190.3

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 72 bp	CCAAGAAGAAGCATCCAGCATGCTGCTGCTAAAAGCTaGCACATTTGGGATCTGCCTGATCCAAGTCTTTGG	+
Preference number: 6 (lower is better) Translates to: PRRSIQHAAAKS*HIWDLPDPSLW Trigger: CCAAAGACTTGGATCAGGCAGATCCCAAATGTGGCAGCTTTTAGCAGCAGCATGCTGGATGCTTCTTCTTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000404190.3
CDS GCA 72 bp	CAAATCCAGTTACTGGCAGATGCAATTAAGCCATGCTaGAAATACACAGCAGGCTTTGGAGCTGTCCTCCCT	+
Preference number: 6 (lower is better) Translates to: QIQLLADAIKPC*KYTAGFGAVLP Trigger: AGGGAGGACAGCTCCAAAGCCTGCTGTGTATTTGCAGCATGGCTTAATTGCATCTGCCAGTAACTGGATTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000404190.3
CDS GCA 72 bp	TTGCAAATCCAGTTACTGGCAGATGCAATTAAGCCATaGTGCAAATACACAGCAGGCTTTGGAGCTGTCCTC	+
Preference number: 6 (lower is better) Translates to: LQIQLLADAIKP*CKYTAGFGAVL Trigger: GAGGACAGCTCCAAAGCCTGCTGTGTATTTGCAGCATGGCTTAATTGCATCTGCCAGTAACTGGATTTGCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000404190.3
CDS CAA 72 bp	CATCATGTTCTGATCAGAGTTTCCCCAATCAAAAGCTaGGAGCTGACCAGAATTAACAGCCTGAGCCCAGTG	+
Preference number: 6 (lower is better) Translates to: HHVLIRVSPIKS*ELTRINSLSPV Trigger: CACTGGGCTCAGGCTGTTAATTCTGGTCAGCTCCAAGCTTTTGATTGGGGAAACTCTGATCAGAACATGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000404190.3
CDS CAA 90 bp	ATGGAAGTGCATCATGTTCTGATCAGAGTTTCCCCAATCAAAAGCTaGGAGCTGACCAGAATTAACAGCCTGAGCCCAGTGCAGCATATT	+
Preference number: 6 (lower is better) Translates to: MEVHHVLIRVSPIKS*ELTRINSLSPVQHI Trigger: AATATGCTGCACTGGGCTCAGGCTGTTAATTCTGGTCAGCTCCAAGCTTTTGATTGGGGAAACTCTGATCAGAACATGATGCACTTCCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000404190.3
CDS CAA 72 bp	TTTTGCGGATCAAATCCACTCAGAGTAAATAGGAAGTaGCTGCAAATACGACGGAATAGCTTTCGATTGCAC	+
Preference number: 6 (lower is better) Translates to: FCGSNPLRVNRK*LQIRRNSFRLH Trigger: GTGCAATCGAAAGCTATTCCGTCGTATTTGCAGCAACTTCCTATTTACTCTGAGTGGATTTGATCCGCAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000404190.3
CDS CAA 90 bp	ATATTTAAGTTTTGCGGATCAAATCCACTCAGAGTAAATAGGAAGTaGCTGCAAATACGACGGAATAGCTTTCGATTGCACACTTTGGTG	+
Preference number: 6 (lower is better) Translates to: IFKFCGSNPLRVNRK*LQIRRNSFRLHTLV Trigger: CACCAAAGTGTGCAATCGAAAGCTATTCCGTCGTATTTGCAGCAACTTCCTATTTACTCTGAGTGGATTTGATCCGCAAAACTTAAATAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000404190.3
CDS CCA 72 bp	ATCCTCTCCAAGGTAAAAATCCACATGATTGTAGTGTaGAATCAGCTTGTAATAAATAAGGTTAGCAATTTG	+
Preference number: 6 (lower is better) Translates to: ILSKVKIHMIVV*NQLVINKVSNL Trigger: CAAATTGCTAACCTTATTTATTACAAGCTGATTCCACACTACAATCATGTGGATTTTTACCTTGGAGAGGAT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000404190.3

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu