Pregenerated sensors for LINCMD1 (Homo sapiens)

Ensembl gene IDs: ENSG00000225613

Ensembl transcript IDs: ENST00000418518.2

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GACACACTACCTGGGCTCAAGTCCCAGCTCCCCACTCTCCAGCTGTaGCACTTGAGCAAGTTGCTTGACCTCTCCAGGCCTGGGTTTCCT	+
Preference number: 5 (lower is better) Translates to: DTLPGLKSQLPTLQL*HLSKLLDLSRPGFP Trigger: AGGAAACCCAGGCCTGGAGAGGTCAAGCAACTTGCTCAAGTGGCACAGCTGGAGAGTGGGGAGCTGGGACTTGAGCCCAGGTAGTGTGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000418518.2
CDS CCA 90 bp	ACACTTGCAGCTCTTTTCCCACCTGCTCCCATACATCGTGAAGACTaGCAGGCCACCTTTCTGGGGAGTTTCTTCTTCTTAGTCAGCTCT	+
Preference number: 5 (lower is better) Translates to: TLAALFPPAPIHRED*QATFLGSFFFLVSS Trigger: AGAGCTGACTAAGAAGAAGAAACTCCCCAGAAAGGTGGCCTGCCAGTCTTCACGATGTATGGGAGCAGGTGGGAAAAGAGCTGCAAGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000418518.2
CDS TCA 90 bp	TCTTGCAGAAGTTGGCATCGCTGGTTAAACTCATTCTGTGTTTCCTaGTCAGCAGTTTCAACAATTTCAATGATGAAGTGCAAACACTTG	+
Preference number: 5 (lower is better) Translates to: SCRSWHRWLNSFCVS*SAVSTISMMKCKHL Trigger: CAAGTGTTTGCACTTCATCATTGAAATTGTTGAAACTGCTGATCAGGAAACACAGAATGAGTTTAACCAGCGATGCCAACTTCTGCAAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000418518.2
CDS CAA 72 bp	CTCAAGTCCCAGCTCCCCACTCTCCAGCTGTGCCACTaGAGCAAGTTGCTTGACCTCTCCAGGCCTGGGTTT	+
Preference number: 6 (lower is better) Translates to: LKSQLPTLQLCH*SKLLDLSRPGF Trigger: AAACCCAGGCCTGGAGAGGTCAAGCAACTTGCTCAAGTGGCACAGCTGGAGAGTGGGGAGCTGGGACTTGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000418518.2
CDS CCA 72 bp	GCTCTTTTCCCACCTGCTCCCATACATCGTGAAGACTaGCAGGCCACCTTTCTGGGGAGTTTCTTCTTCTTA	+
Preference number: 6 (lower is better) Translates to: ALFPPAPIHRED*QATFLGSFFFL Trigger: TAAGAAGAAGAAACTCCCCAGAAAGGTGGCCTGCCAGTCTTCACGATGTATGGGAGCAGGTGGGAAAAGAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000418518.2
CDS CAA 72 bp	TACAGAGCTCCCAAGCTGGAGTCCATCTTGCAGAAGTaGGCATCGCTGGTTAAACTCATTCTGTGTTTCCTG	+
Preference number: 6 (lower is better) Translates to: YRAPKLESILQK*ASLVKLILCFL Trigger: CAGGAAACACAGAATGAGTTTAACCAGCGATGCCAACTTCTGCAAGATGGACTCCAGCTTGGGAGCTCTGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000418518.2

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