Pregenerated sensors for LINCADL (Homo sapiens)
Ensembl gene IDs: ENSG00000287148Ensembl transcript IDs: ENST00000666259.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AATATCGGAGTTCTTCAAGGCCTGGTCTTGGGTCATATTTTCTTCTaGCTCTGTGCTCTTTCCCTGAGTGATGCCATCCTGTCCCATAGG | + |
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Preference number: 5 (lower is better) Translates to: NIGVLQGLVLGHIFF*LCALSLSDAILSHR Trigger: CCTATGGGACAGGATGGCATCACTCAGGGAAAGAGCACAGAGTCAGAAGAAAATATGACCCAAGACCAGGCCTTGAAGAACTCCGATATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666259.1 |
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| CDS CCA 90 bp | CAGCGAATCACTCCCTTCTGTTTGACTTCTGGGACCATCTCCCCTTaGTTGATTCTCTCTTCTCTGGCCCATCTTTTCAGATACTTTCGT | + |
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Preference number: 5 (lower is better) Translates to: QRITPFCLTSGTISP*LILSSLAHLFRYFR Trigger: ACGAAAGTATCTGAAAAGATGGGCCAGAGAAGAGAGAATCAACCAAGGGGAGATGGTCCCAGAAGTCAAACAGAAGGGAGTGATTCGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666259.1 |
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| CDS GCA 90 bp | AGGTTCAGAAACCACACATATGCTGATGAATCCTGTGTTTATGTCTaGAACCTCAACCCCTGTATCCACTGGCTCCTTGGCATTGGTGTT | + |
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Preference number: 5 (lower is better) Translates to: RFRNHTYADESCVYV*NLNPCIHWLLGIGV Trigger: AACACCAATGCCAAGGAGCCAGTGGATACAGGGGTTGAGGTTGCAGACATAAACACAGGATTCATCAGCATATGTGTGGTTTCTGAACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666259.1 |
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| CDS CCA 90 bp | TGGGAGACTAGAGTTTTATTACTCAAATCGGTCGCCTTGAACATTTaGAGACCAGGGCTTTTAAGGAGAATTTGGTGGGTAGGGATCAAG | + |
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Preference number: 5 (lower is better) Translates to: WETRVLLLKSVALNI*RPGLLRRIWWVGIK Trigger: CTTGATCCCTACCCACCAAATTCTCCTTAAAAGCCCTGGTCTCCAAATGTTCAAGGCGACCGATTTGAGTAATAAAACTCTAGTCTCCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666259.1 |
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| CDS CAA 72 bp | GCAACCTCAACCCCTGTATCCACTGGCTCCTTGGCATaGGTGTTGACTGTGTCACAGGCTCCTCGGTCTGAA | + |
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Preference number: 6 (lower is better) Translates to: ATSTPVSTGSLA*VLTVSQAPRSE Trigger: TTCAGACCGAGGAGCCTGTGACACAGTCAACACCAATGCCAAGGAGCCAGTGGATACAGGGGTTGAGGTTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666259.1 |
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| CDS CAA 72 bp | ATGTCTGCAACCTCAACCCCTGTATCCACTGGCTCCTaGGCATTGGTGTTGACTGTGTCACAGGCTCCTCGG | + |
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Preference number: 6 (lower is better) Translates to: MSATSTPVSTGS*ALVLTVSQAPR Trigger: CCGAGGAGCCTGTGACACAGTCAACACCAATGCCAAGGAGCCAGTGGATACAGGGGTTGAGGTTGCAGACAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666259.1 |
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| CDS CCA 72 bp | TGTGTTTATGTCTGCAACCTCAACCCCTGTATCCACTaGCTCCTTGGCATTGGTGTTGACTGTGTCACAGGC | + |
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Preference number: 6 (lower is better) Translates to: CVYVCNLNPCIH*LLGIGVDCVTG Trigger: GCCTGTGACACAGTCAACACCAATGCCAAGGAGCCAGTGGATACAGGGGTTGAGGTTGCAGACATAAACACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666259.1 |
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| CDS CAA 72 bp | CACTCCCTTCTGTTTGACTTCTGGGACCATCTCCCCTaGGTTGATTCTCTCTTCTCTGGCCCATCTTTTCAG | + |
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Preference number: 6 (lower is better) Translates to: HSLLFDFWDHLP*VDSLFSGPSFQ Trigger: CTGAAAAGATGGGCCAGAGAAGAGAGAATCAACCAAGGGGAGATGGTCCCAGAAGTCAAACAGAAGGGAGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666259.1 |
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| CDS CAA 72 bp | CTGCAGCATTCATCACAGCGAATCACTCCCTTCTGTTaGACTTCTGGGACCATCTCCCCTTGGTTGATTCTC | + |
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Preference number: 6 (lower is better) Translates to: LQHSSQRITPFC*TSGTISPWLIL Trigger: GAGAATCAACCAAGGGGAGATGGTCCCAGAAGTCAAACAGAAGGGAGTGATTCGCTGTGATGAATGCTGCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666259.1 |
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| CDS CAA 90 bp | ATTTGGCCTCTGCAGCATTCATCACAGCGAATCACTCCCTTCTGTTaGACTTCTGGGACCATCTCCCCTTGGTTGATTCTCTCTTCTCTG | + |
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Preference number: 6 (lower is better) Translates to: IWPLQHSSQRITPFC*TSGTISPWLILSSL Trigger: CAGAGAAGAGAGAATCAACCAAGGGGAGATGGTCCCAGAAGTCAAACAGAAGGGAGTGATTCGCTGTGATGAATGCTGCAGAGGCCAAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666259.1 |
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| CDS GCA 72 bp | AACCACACATATGCTGATGAATCCTGTGTTTATGTCTaGAACCTCAACCCCTGTATCCACTGGCTCCTTGGC | + |
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Preference number: 6 (lower is better) Translates to: NHTYADESCVYV*NLNPCIHWLLG Trigger: GCCAAGGAGCCAGTGGATACAGGGGTTGAGGTTGCAGACATAAACACAGGATTCATCAGCATATGTGTGGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666259.1 |
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| CDS CCA 72 bp | ACTCCCTTCTGTTTGACTTCTGGGACCATCTCCCCTTaGTTGATTCTCTCTTCTCTGGCCCATCTTTTCAGA | + |
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Preference number: 6 (lower is better) Translates to: TPFCLTSGTISP*LILSSLAHLFR Trigger: TCTGAAAAGATGGGCCAGAGAAGAGAGAATCAACCAAGGGGAGATGGTCCCAGAAGTCAAACAGAAGGGAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666259.1 |
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| CDS CAA 72 bp | CCCTTCTGTTTGACTTCTGGGACCATCTCCCCTTGGTaGATTCTCTCTTCTCTGGCCCATCTTTTCAGATAC | + |
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Preference number: 6 (lower is better) Translates to: PFCLTSGTISPW*ILSSLAHLFRY Trigger: GTATCTGAAAAGATGGGCCAGAGAAGAGAGAATCAACCAAGGGGAGATGGTCCCAGAAGTCAAACAGAAGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666259.1 |
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| CDS CCA 72 bp | TTCATCACAGCGAATCACTCCCTTCTGTTTGACTTCTaGGACCATCTCCCCTTGGTTGATTCTCTCTTCTCT | + |
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Preference number: 6 (lower is better) Translates to: FITANHSLLFDF*DHLPLVDSLFS Trigger: AGAGAAGAGAGAATCAACCAAGGGGAGATGGTCCCAGAAGTCAAACAGAAGGGAGTGATTCGCTGTGATGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666259.1 |
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| CDS CCA 72 bp | AACATTTGGAGACCAGGGCTTTTAAGGAGAATTTGGTaGGTAGGGATCAAGGAGTATGGAGTGCTGGATGAG | + |
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Preference number: 6 (lower is better) Translates to: NIWRPGLLRRIW*VGIKEYGVLDE Trigger: CTCATCCAGCACTCCATACTCCTTGATCCCTACCCACCAAATTCTCCTTAAAAGCCCTGGTCTCCAAATGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666259.1 |
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| CDS CAA 72 bp | CTTGAACATTTGGAGACCAGGGCTTTTAAGGAGAATTaGGTGGGTAGGGATCAAGGAGTATGGAGTGCTGGA | + |
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Preference number: 6 (lower is better) Translates to: LEHLETRAFKEN*VGRDQGVWSAG Trigger: TCCAGCACTCCATACTCCTTGATCCCTACCCACCAAATTCTCCTTAAAAGCCCTGGTCTCCAAATGTTCAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666259.1 |
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| CDS CCA 72 bp | AGAGTTTTATTACTCAAATCGGTCGCCTTGAACATTTaGAGACCAGGGCTTTTAAGGAGAATTTGGTGGGTA | + |
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Preference number: 6 (lower is better) Translates to: RVLLLKSVALNI*RPGLLRRIWWV Trigger: TACCCACCAAATTCTCCTTAAAAGCCCTGGTCTCCAAATGTTCAAGGCGACCGATTTGAGTAATAAAACTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666259.1 |
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| CDS CAA 72 bp | TGGGAGACTAGAGTTTTATTACTCAAATCGGTCGCCTaGAACATTTGGAGACCAGGGCTTTTAAGGAGAATT | + |
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Preference number: 6 (lower is better) Translates to: WETRVLLLKSVA*NIWRPGLLRRI Trigger: AATTCTCCTTAAAAGCCCTGGTCTCCAAATGTTCAAGGCGACCGATTTGAGTAATAAAACTCTAGTCTCCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666259.1 |
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| CDS GCA 72 bp | TCTCTTCTCTGGCCCATCTTTTCAGATACTTTCGTTTaGCTTTTCTTCTACCCAAACATTAAATATCGGAGT | + |
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Preference number: 6 (lower is better) Translates to: SLLWPIFSDTFV*LFFYPNIKYRS Trigger: ACTCCGATATTTAATGTTTGGGTAGAAGAAAAGGCAAACGAAAGTATCTGAAAAGATGGGCCAGAGAAGAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666259.1 |
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