Pregenerated sensors for LINC02888 (Homo sapiens)
Ensembl gene IDs: ENSG00000236318Ensembl transcript IDs: ENST00000419463.1, ENST00000635900.1, ENST00000636703.1
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TCTTTCCAGGAGCTTACCAGGAACAGGGTTCACGGCTTATGTGGATaGTCTCATTTTGTCCTCACAGCATCCTCCTCACAGAGGGTGGGT | + |
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Preference number: 5 (lower is better) Translates to: SFQELTRNRVHGLCG*SHFVLTASSSQRVG Trigger: ACCCACCCTCTGTGAGGAGGATGCTGTGAGGACAAAATGAGATCATCCACATAAGCCGTGAACCCTGTTCCTGGTAAGCTCCTGGAAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419463.1 |
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| CDS TCA 90 bp | GGCGGAGCTGCCCAAGGCCGTCGGAACCCACCTCTTGCATCATTGTaGCATTTACCACTTTATTTTCGCTCACCCTTTCTTCTTGAACTC | + |
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Preference number: 5 (lower is better) Translates to: GGAAQGRRNPPLASL*HLPLYFRSPFLLEL Trigger: GAGTTCAAGAAGAAAGGGTGAGCGAAAATAAAGTGGTAAATGTCACAATGATGCAAGAGGTGGGTTCCGACGGCCTTGGGCAGCTCCGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000635900.1 ENST00000636703.1 |
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| CDS CCA 90 bp | GACTTCTTTCCAGGAGCTTACCAGGAACAGGGTTCACGGCTTATGTaGATGATCTCATTTTGTCCTCACAGCATCCTCCTCACAGAGGGT | + |
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Preference number: 5 (lower is better) Translates to: DFFPGAYQEQGSRLM*MISFCPHSILLTEG Trigger: ACCCTCTGTGAGGAGGATGCTGTGAGGACAAAATGAGATCATCCACATAAGCCGTGAACCCTGTTCCTGGTAAGCTCCTGGAAAGAAGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419463.1 |
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| CDS GCA 90 bp | TTTAAAGACTTTCCTTGGCTGACTTCTCTGATGAGGTTTCCTGCTTaGCAGGAGAGCACGCTAATGCAGAAATTACAAAGGGGGCTTCAC | + |
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Preference number: 5 (lower is better) Translates to: FKDFPWLTSLMRFPA*QESTLMQKLQRGLH Trigger: GTGAAGCCCCCTTTGTAATTTCTGCATTAGCGTGCTCTCCTGGCAAGCAGGAAACCTCATCAGAGAAGTCAGCCAAGGAAAGTCTTTAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000419463.1 ENST00000635900.1 ENST00000636703.1 |
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| CDS CCA 90 bp | TGCATTTGCTCCTCGTTTGCACAATTTCCATTTAAAGACTTTCCTTaGCTGACTTCTCTGATGAGGTTTCCTGCTTGCCAGGAGAGCACG | + |
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Preference number: 5 (lower is better) Translates to: CICSSFAQFPFKDFP*LTSLMRFPACQEST Trigger: CGTGCTCTCCTGGCAAGCAGGAAACCTCATCAGAGAAGTCAGCCAAGGAAAGTCTTTAAATGGAAATTGTGCAAACGAGGAGCAAATGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000419463.1 ENST00000635900.1 ENST00000636703.1 |
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| CDS CCA 90 bp | CCCCTGGAATTCATAGATGATTTCACTGCTTACAATTCTCTGAATTaGTCCTTCCCAGAACATTTAGCCTCTGATAACTCCAATGGTTTC | + |
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Preference number: 5 (lower is better) Translates to: PLEFIDDFTAYNSLN*SFPEHLASDNSNGF Trigger: GAAACCATTGGAGTTATCAGAGGCTAAATGTTCTGGGAAGGACCAATTCAGAGAATTGTAAGCAGTGAAATCATCTATGAATTCCAGGGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000636703.1 |
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| CDS TCA 90 bp | TATCTGCATTATTGTGCAAACACTTCTGAGATCTCATCACATACCTaGTCCCATTTAACTTCAGTCTATCCCTCCATTACTTTTTGTGGA | + |
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Preference number: 5 (lower is better) Translates to: YLHYCANTSEISSHT*SHLTSVYPSITFCG Trigger: TCCACAAAAAGTAATGGAGGGATAGACTGAAGTTAAATGGGATCAGGTATGTGATGAGATCTCAGAAGTGTTTGCACAATAATGCAGATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000635900.1 |
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| CDS GCA 90 bp | CTCATTTGTAAAGATAATACTGAAAAACATCCTGACTCTTATGTATaGTTGCCTGTCTCTGAACTCCACCTCTATCAGCATACTCAATAC | + |
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Preference number: 5 (lower is better) Translates to: LICKDNTEKHPDSYV*LPVSELHLYQHTQY Trigger: GTATTGAGTATGCTGATAGAGGTGGAGTTCAGAGACAGGCAAGCATACATAAGAGTCAGGATGTTTTTCAGTATTATCTTTACAAATGAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000635900.1 |
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| CDS CCA 90 bp | TTGCCTCTTTCCAACATTTATCTCCTATTTCAGGAGAAAGTTTTGTaGGAGCGTCTACCACGTTGCAAAGATTCAACATTTCTCTTAAAA | + |
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Preference number: 5 (lower is better) Translates to: LPLSNIYLLFQEKVL*ERLPRCKDSTFLLK Trigger: TTTTAAGAGAAATGTTGAATCTTTGCAACGTGGTAGACGCTCCCACAAAACTTTCTCCTGAAATAGGAGATAAATGTTGGAAAGAGGCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000635900.1 |
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| CDS GCA 90 bp | TTTGTAAAGATAATACTGAAAAACATCCTGACTCTTATGTATGCTTaGCTGTCTCTGAACTCCACCTCTATCAGCATACTCAATACATTG | + |
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Preference number: 5 (lower is better) Translates to: FVKIILKNILTLMYA*LSLNSTSISILNTL Trigger: CAATGTATTGAGTATGCTGATAGAGGTGGAGTTCAGAGACAGGCAAGCATACATAAGAGTCAGGATGTTTTTCAGTATTATCTTTACAAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000635900.1 |
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| CDS GCA 90 bp | TCCCATTTAACTTCAGTCTATCCCTCCATTACTTTTTGTGGAAAGTaGTATCTAAGTTGGAGGTTCTGCTTGAGTATTCTTAATTTTTCT | + |
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Preference number: 5 (lower is better) Translates to: SHLTSVYPSITFCGK*YLSWRFCLSILNFS Trigger: AGAAAAATTAAGAATACTCAAGCAGAACCTCCAACTTAGATAGCACTTTCCACAAAAAGTAATGGAGGGATAGACTGAAGTTAAATGGGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000635900.1 |
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| CDS CAA 72 bp | GGGGCGGAGCTGCCCAAGGCCGTCGGAACCCACCTCTaGCATCATTGTGACATTTACCACTTTATTTTCGCT | + |
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Preference number: 6 (lower is better) Translates to: GAELPKAVGTHL*HHCDIYHFIFA Trigger: AGCGAAAATAAAGTGGTAAATGTCACAATGATGCAAGAGGTGGGTTCCGACGGCCTTGGGCAGCTCCGCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000635900.1 ENST00000636703.1 |
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| CDS CCA 72 bp | CCAGGAGCTTACCAGGAACAGGGTTCACGGCTTATGTaGATGATCTCATTTTGTCCTCACAGCATCCTCCTC | + |
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Preference number: 6 (lower is better) Translates to: PGAYQEQGSRLM*MISFCPHSILL Trigger: GAGGAGGATGCTGTGAGGACAAAATGAGATCATCCACATAAGCCGTGAACCCTGTTCCTGGTAAGCTCCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419463.1 |
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| CDS TCA 72 bp | GAGCTTACCAGGAACAGGGTTCACGGCTTATGTGGATaGTCTCATTTTGTCCTCACAGCATCCTCCTCACAG | + |
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Preference number: 6 (lower is better) Translates to: ELTRNRVHGLCG*SHFVLTASSSQ Trigger: CTGTGAGGAGGATGCTGTGAGGACAAAATGAGATCATCCACATAAGCCGTGAACCCTGTTCCTGGTAAGCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419463.1 |
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| CDS CAA 90 bp | AGCTTACCAGGAACAGGGTTCACGGCTTATGTGGATGATCTCATTTaGTCCTCACAGCATCCTCCTCACAGAGGGTGGGTGCTATTATTA | + |
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Preference number: 6 (lower is better) Translates to: SLPGTGFTAYVDDLI*SSQHPPHRGWVLLL Trigger: TAATAATAGCACCCACCCTCTGTGAGGAGGATGCTGTGAGGACAAAATGAGATCATCCACATAAGCCGTGAACCCTGTTCCTGGTAAGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419463.1 |
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| CDS TCA 72 bp | TCACAACTGAAGCCCCAGGCCCCTGGAATTCATAGATaGTTTCACTGCTTACAATTCTCTGAATTGGTCCTT | + |
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Preference number: 6 (lower is better) Translates to: SQLKPQAPGIHR*FHCLQFSELVL Trigger: AAGGACCAATTCAGAGAATTGTAAGCAGTGAAATCATCTATGAATTCCAGGGGCCTGGGGCTTCAGTTGTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000636703.1 |
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| CDS GCA 72 bp | AAATGGATTTTCATTGAAATTCACCACGATCCCCTCTaGAGCTGTGGTCTGAAAGTACCATTTCTGCATTTA | + |
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Preference number: 6 (lower is better) Translates to: KWIFIEIHHDPL*SCGLKVPFLHL Trigger: TAAATGCAGAAATGGTACTTTCAGACCACAGCTGCAGAGGGGATCGTGGTGAATTTCAATGAAAATCCATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000419463.1 ENST00000635900.1 |
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| CDS GCA 72 bp | ATAATACTGAAAAACATCCTGACTCTTATGTATGCTTaGCTGTCTCTGAACTCCACCTCTATCAGCATACTC | + |
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Preference number: 6 (lower is better) Translates to: IILKNILTLMYA*LSLNSTSISIL Trigger: GAGTATGCTGATAGAGGTGGAGTTCAGAGACAGGCAAGCATACATAAGAGTCAGGATGTTTTTCAGTATTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000635900.1 |
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| CDS CAA 72 bp | CTTTCCAACATTTATCTCCTATTTCAGGAGAAAGTTTaGTGGGAGCGTCTACCACGTTGCAAAGATTCAACA | + |
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Preference number: 6 (lower is better) Translates to: LSNIYLLFQEKV*WERLPRCKDST Trigger: TGTTGAATCTTTGCAACGTGGTAGACGCTCCCACAAAACTTTCTCCTGAAATAGGAGATAAATGTTGGAAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000635900.1 |
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| CDS CAA 90 bp | ACATTGCCTCTTTCCAACATTTATCTCCTATTTCAGGAGAAAGTTTaGTGGGAGCGTCTACCACGTTGCAAAGATTCAACATTTCTCTTA | + |
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Preference number: 6 (lower is better) Translates to: TLPLSNIYLLFQEKV*WERLPRCKDSTFLL Trigger: TAAGAGAAATGTTGAATCTTTGCAACGTGGTAGACGCTCCCACAAAACTTTCTCCTGAAATAGGAGATAAATGTTGGAAAGAGGCAATGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000635900.1 |
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| CDS GCA 72 bp | ACTTCAGTCTATCCCTCCATTACTTTTTGTGGAAAGTaGTATCTAAGTTGGAGGTTCTGCTTGAGTATTCTT | + |
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Preference number: 6 (lower is better) Translates to: TSVYPSITFCGK*YLSWRFCLSIL Trigger: AAGAATACTCAAGCAGAACCTCCAACTTAGATAGCACTTTCCACAAAAAGTAATGGAGGGATAGACTGAAGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000635900.1 |
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| CDS CCA 72 bp | TCCAACATTTATCTCCTATTTCAGGAGAAAGTTTTGTaGGAGCGTCTACCACGTTGCAAAGATTCAACATTT | + |
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Preference number: 6 (lower is better) Translates to: SNIYLLFQEKVL*ERLPRCKDSTF Trigger: AAATGTTGAATCTTTGCAACGTGGTAGACGCTCCCACAAAACTTTCTCCTGAAATAGGAGATAAATGTTGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000635900.1 |
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| CDS CCA 72 bp | GATAGATTTTCAGGATATTTACTCTGCCAATACTGTTaGAAAAGGAAGTCTCTGTCTACTCTTCACCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: DRFSGYLLCQYC*KRKSLSTLHLP Trigger: AGGAAGGTGAAGAGTAGACAGAGACTTCCTTTTCCAACAGTATTGGCAGAGTAAATATCCTGAAAATCTATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000636703.1 |
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| CDS CAA 90 bp | ATTTGTAAAGATAATACTGAAAAACATCCTGACTCTTATGTATGCTaGCCTGTCTCTGAACTCCACCTCTATCAGCATACTCAATACATT | + |
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Preference number: 6 (lower is better) Translates to: ICKDNTEKHPDSYVC*PVSELHLYQHTQYI Trigger: AATGTATTGAGTATGCTGATAGAGGTGGAGTTCAGAGACAGGCAAGCATACATAAGAGTCAGGATGTTTTTCAGTATTATCTTTACAAAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000635900.1 |
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| CDS GCA 72 bp | GTTCCAATCCTTATGACTCTGTTTAAAATGAGTATCTaGATTATTGTGCAAACACTTCTGAGATCTCATCAC | + |
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Preference number: 6 (lower is better) Translates to: VPILMTLFKMSI*IIVQTLLRSHH Trigger: GTGATGAGATCTCAGAAGTGTTTGCACAATAATGCAGATACTCATTTTAAACAGAGTCATAAGGATTGGAAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000635900.1 |
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| CDS CAA 72 bp | ATATTGGCATCAAACCATTGCCTATTGAAGCAAGCTTaGAATGAAATTGGTTTGTCATTGACCACTGTAAGA | + |
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Preference number: 6 (lower is better) Translates to: ILASNHCLLKQA*NEIGLSLTTVR Trigger: TCTTACAGTGGTCAATGACAAACCAATTTCATTCAAAGCTTGCTTCAATAGGCAATGGTTTGATGCCAATAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000635900.1 |
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| CDS CAA 72 bp | CATTGCCTATTGAAGCAAGCTTTGAATGAAATTGGTTaGTCATTGACCACTGTAAGAAACTCATTTGTAAAG | + |
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Preference number: 6 (lower is better) Translates to: HCLLKQALNEIG*SLTTVRNSFVK Trigger: CTTTACAAATGAGTTTCTTACAGTGGTCAATGACAAACCAATTTCATTCAAAGCTTGCTTCAATAGGCAATG 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000635900.1 |
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