Pregenerated sensors for LINC02880 (Homo sapiens)
Ensembl gene IDs: ENSG00000175967Ensembl transcript IDs: ENST00000314481.3, ENST00000658538.1
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CAGACTTCACAGTGGGATCTTGGCGCCTCGGATAAACAAAGGCACTaGCAGGAAGGAAAGCGAAAATCAGAGGAGAGGTCTGGCAGGCCA | + |
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Preference number: 5 (lower is better) Translates to: QTSQWDLGASDKQRH*QEGKRKSEERSGRP Trigger: TGGCCTGCCAGACCTCTCCTCTGATTTTCGCTTTCCTTCCTGCCAGTGCCTTTGTTTATCCGAGGCGCCAAGATCCCACTGTGAAGTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000314481.3 ENST00000658538.1 |
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| CDS TCA 90 bp | CTTGGCTGGTTTCCTGAAATCCAGTTCATGGAGCCACAGCCCCAGTaGGTGCTCACTCAAGAAACAAAGGCTCAAGAGAGGACAGGCACC | + |
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Preference number: 5 (lower is better) Translates to: LGWFPEIQFMEPQPQ*VLTQETKAQERTGT Trigger: GGTGCCTGTCCTCTCTTGAGCCTTTGTTTCTTGAGTGAGCACTCACTGGGGCTGTGGCTCCATGAACTGGATTTCAGGAAACCAGCCAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000314481.3 ENST00000658538.1 |
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| CDS TCA 90 bp | CGATGGCAGGTTTTGCACTTGAGCTGGGGAGAAAGCCAGTGGTGCTaGAAGCAATGGAGATTGAGGTACAGAGATCTTCCTGCCGAACCC | + |
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Preference number: 5 (lower is better) Translates to: RWQVLHLSWGESQWC*KQWRLRYRDLPAEP Trigger: GGGTTCGGCAGGAAGATCTCTGTACCTCAATCTCCATTGCTTTCAGCACCACTGGCTTTCTCCCCAGCTCAAGTGCAAAACCTGCCATCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000314481.3 ENST00000658538.1 |
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| CDS GCA 90 bp | GCTGGTTTCCTGAAATCCAGTTCATGGAGCCACAGCCCCAGTGAGTaGTCACTCAAGAAACAAAGGCTCAAGAGAGGACAGGCACCAGCT | + |
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Preference number: 5 (lower is better) Translates to: AGFLKSSSWSHSPSE*SLKKQRLKRGQAPA Trigger: AGCTGGTGCCTGTCCTCTCTTGAGCCTTTGTTTCTTGAGTGAGCACTCACTGGGGCTGTGGCTCCATGAACTGGATTTCAGGAAACCAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000314481.3 ENST00000658538.1 |
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| CDS TCA 90 bp | CTTTCTAGGAATGGAGAGAGAGAGAGAATGCCTTGGCTGGTTTCCTaGAATCCAGTTCATGGAGCCACAGCCCCAGTGAGTGCTCACTCA | + |
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Preference number: 5 (lower is better) Translates to: LSRNGERERMPWLVS*NPVHGATAPVSAHS Trigger: TGAGTGAGCACTCACTGGGGCTGTGGCTCCATGAACTGGATTTCAGGAAACCAGCCAAGGCATTCTCTCTCTCTCTCCATTCCTAGAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000314481.3 ENST00000658538.1 |
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| CDS GCA 90 bp | CCAGTGGTGCTGAAAGCAATGGAGATTGAGGTACAGAGATCTTCCTaGCGAACCCATTCCCAGGCTTTCTGCCTTTCTAGGAATGGAGAG | + |
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Preference number: 5 (lower is better) Translates to: PVVLKAMEIEVQRSS*RTHSQAFCLSRNGE Trigger: CTCTCCATTCCTAGAAAGGCAGAAAGCCTGGGAATGGGTTCGGCAGGAAGATCTCTGTACCTCAATCTCCATTGCTTTCAGCACCACTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000314481.3 ENST00000658538.1 |
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| CDS GCA 90 bp | ATTGAGGTACAGAGATCTTCCTGCCGAACCCATTCCCAGGCTTTCTaGCTTTCTAGGAATGGAGAGAGAGAGAGAATGCCTTGGCTGGTT | + |
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Preference number: 5 (lower is better) Translates to: IEVQRSSCRTHSQAF*LSRNGERERMPWLV Trigger: AACCAGCCAAGGCATTCTCTCTCTCTCTCCATTCCTAGAAAGGCAGAAAGCCTGGGAATGGGTTCGGCAGGAAGATCTCTGTACCTCAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000314481.3 ENST00000658538.1 |
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| CDS CCA 90 bp | GAACCCCACCTTGGTTGTGATTTTGTGCCAGAGAATCTTTACCTCTaGAGAATGCAGTGGAGACATTCTTGTGTCATTTCACTTCCAGAA | + |
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Preference number: 5 (lower is better) Translates to: EPHLGCDFVPENLYL*RMQWRHSCVISLPE Trigger: TTCTGGAAGTGAAATGACACAAGAATGTCTCCACTGCATTCTCCAGAGGTAAAGATTCTCTGGCACAAAATCACAACCAAGGTGGGGTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000314481.3 ENST00000658538.1 |
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| CDS TCA 90 bp | ATCTATGAGTTACCTATAATATCTTTGAGTTACCTACAAAGTATATaGCACTGTCCTACCCGTGACAGAAATGAAGTAGACACATGTGGT | + |
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Preference number: 5 (lower is better) Translates to: IYELPIISLSYLQSI*HCPTRDRNEVDTCG Trigger: ACCACATGTGTCTACTTCATTTCTGTCACGGGTAGGACAGTGTCATATACTTTGTAGGTAACTCAAAGATATTATAGGTAACTCATAGAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000314481.3 |
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| CDS TCA 90 bp | ACAATATTTTTATCTGAGCACACACTGTCTGAATTCAGATCAGTGTaGTCCATAAATTGTATAAACTCCATGCCAACCTACTTTCTTCAC | + |
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Preference number: 5 (lower is better) Translates to: TIFLSEHTLSEFRSV*SINCINSMPTYFLH Trigger: GTGAAGAAAGTAGGTTGGCATGGAGTTTATACAATTTATGGATCACACTGATCTGAATTCAGACAGTGTGTGCTCAGATAAAAATATTGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000314481.3 ENST00000658538.1 |
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| CDS GCA 72 bp | ACAGCCCACCCGAACCAAGGCTGGCTGCATGGCTGCTaGCATTTGTTCTATAGTTTTGGAACCCCACCTTGG | + |
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Preference number: 6 (lower is better) Translates to: TAHPNQGWLHGC*HLFYSFGTPPW Trigger: CCAAGGTGGGGTTCCAAAACTATAGAACAAATGGCAGCAGCCATGCAGCCAGCCTTGGTTCGGGTGGGCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000314481.3 ENST00000658538.1 |
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| CDS CAA 72 bp | CTAACAGCCTTTGGGTCCCTCTTTCTGAAACAAGGCTaGAGAGCATGTCCTCTGGCCTGGGGGACTTGGGTG | + |
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Preference number: 6 (lower is better) Translates to: LTAFGSLFLKQG*RACPLAWGTWV Trigger: CACCCAAGTCCCCCAGGCCAGAGGACATGCTCTCAAGCCTTGTTTCAGAAAGAGGGACCCAAAGGCTGTTAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000314481.3 ENST00000658538.1 |
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| CDS CAA 90 bp | TTCTCTTCCCTAACAGCCTTTGGGTCCCTCTTTCTGAAACAAGGCTaGAGAGCATGTCCTCTGGCCTGGGGGACTTGGGTGAGTCTGAGG | + |
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Preference number: 6 (lower is better) Translates to: FSSLTAFGSLFLKQG*RACPLAWGTWVSLR Trigger: CCTCAGACTCACCCAAGTCCCCCAGGCCAGAGGACATGCTCTCAAGCCTTGTTTCAGAAAGAGGGACCCAAAGGCTGTTAGGGAAGAGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000314481.3 ENST00000658538.1 |
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| CDS TCA 72 bp | GGGGAGAAAGCCAGTGGTGCTGAAAGCAATGGAGATTaGGGTACAGAGATCTTCCTGCCGAACCCATTCCCA | + |
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Preference number: 6 (lower is better) Translates to: GEKASGAESNGD*GTEIFLPNPFP Trigger: TGGGAATGGGTTCGGCAGGAAGATCTCTGTACCTCAATCTCCATTGCTTTCAGCACCACTGGCTTTCTCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000314481.3 ENST00000658538.1 |
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| CDS CCA 72 bp | AGCGAGAACCACTGGTCTTCCTTTCAGACTTCACAGTaGGATCTTGGCGCCTCGGATAAACAAAGGCACTGG | + |
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Preference number: 6 (lower is better) Translates to: SENHWSSFQTSQ*DLGASDKQRHW Trigger: CCAGTGCCTTTGTTTATCCGAGGCGCCAAGATCCCACTGTGAAGTCTGAAAGGAAGACCAGTGGTTCTCGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000314481.3 ENST00000658538.1 |
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| CDS CAA 72 bp | ACCACTGGTCTTCCTTTCAGACTTCACAGTGGGATCTaGGCGCCTCGGATAAACAAAGGCACTGGCAGGAAG | + |
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Preference number: 6 (lower is better) Translates to: TTGLPFRLHSGI*APRINKGTGRK Trigger: CTTCCTGCCAGTGCCTTTGTTTATCCGAGGCGCCAAGATCCCACTGTGAAGTCTGAAAGGAAGACCAGTGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000314481.3 ENST00000658538.1 |
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| CDS CAA 90 bp | AAAGCGAGAACCACTGGTCTTCCTTTCAGACTTCACAGTGGGATCTaGGCGCCTCGGATAAACAAAGGCACTGGCAGGAAGGAAAGCGAA | + |
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Preference number: 6 (lower is better) Translates to: KARTTGLPFRLHSGI*APRINKGTGRKESE Trigger: TTCGCTTTCCTTCCTGCCAGTGCCTTTGTTTATCCGAGGCGCCAAGATCCCACTGTGAAGTCTGAAAGGAAGACCAGTGGTTCTCGCTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000314481.3 ENST00000658538.1 |
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| CDS TCA 72 bp | AATGGAGAGAGAGAGAGAATGCCTTGGCTGGTTTCCTaGAATCCAGTTCATGGAGCCACAGCCCCAGTGAGT | + |
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Preference number: 6 (lower is better) Translates to: NGERERMPWLVS*NPVHGATAPVS Trigger: ACTCACTGGGGCTGTGGCTCCATGAACTGGATTTCAGGAAACCAGCCAAGGCATTCTCTCTCTCTCTCCATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000314481.3 ENST00000658538.1 |
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| CDS GCA 72 bp | CAGAGATCTTCCTGCCGAACCCATTCCCAGGCTTTCTaGCTTTCTAGGAATGGAGAGAGAGAGAGAATGCCT | + |
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Preference number: 6 (lower is better) Translates to: QRSSCRTHSQAF*LSRNGERERMP Trigger: AGGCATTCTCTCTCTCTCTCCATTCCTAGAAAGGCAGAAAGCCTGGGAATGGGTTCGGCAGGAAGATCTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000314481.3 ENST00000658538.1 |
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| CDS CCA 72 bp | GGTTTGAGGACCCTGGTTCTCTTCCCTAACAGCCTTTaGGTCCCTCTTTCTGAAACAAGGCTTGAGAGCATG | + |
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Preference number: 6 (lower is better) Translates to: GLRTLVLFPNSL*VPLSETRLESM Trigger: CATGCTCTCAAGCCTTGTTTCAGAAAGAGGGACCCAAAGGCTGTTAGGGAAGAGAACCAGGGTCCTCAAACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000314481.3 ENST00000658538.1 |
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| CDS CAA 90 bp | CACAGCAAGATAACCAACAAGTCGGGAGGGAGGGTGCAGTTTCCGTaGCAGCTGAAGAAACTTCAGAGTGATGAACAAACTCGACATTTC | + |
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Preference number: 6 (lower is better) Translates to: HSKITNKSGGRVQFP*QLKKLQSDEQTRHF Trigger: GAAATGTCGAGTTTGTTCATCACTCTGAAGTTTCTTCAGCTGCAACGGAAACTGCACCCTCCCTCCCGACTTGTTGGTTATCTTGCTGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000314481.3 ENST00000658538.1 |
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| CDS CAA 90 bp | TGTGCCAGAGAATCTTTACCTCTGGAGAATGCAGTGGAGACATTCTaGTGTCATTTCACTTCCAGAATGCAAGGCCACCCAGCTACCCAT | + |
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Preference number: 6 (lower is better) Translates to: CARESLPLENAVETF*CHFTSRMQGHPATH Trigger: ATGGGTAGCTGGGTGGCCTTGCATTCTGGAAGTGAAATGACACAAGAATGTCTCCACTGCATTCTCCAGAGGTAAAGATTCTCTGGCACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000314481.3 ENST00000658538.1 |
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| CDS CAA 72 bp | ATAACCAACAAGTCGGGAGGGAGGGTGCAGTTTCCGTaGCAGCTGAAGAAACTTCAGAGTGATGAACAAACT | + |
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Preference number: 6 (lower is better) Translates to: ITNKSGGRVQFP*QLKKLQSDEQT Trigger: AGTTTGTTCATCACTCTGAAGTTTCTTCAGCTGCAACGGAAACTGCACCCTCCCTCCCGACTTGTTGGTTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000314481.3 ENST00000658538.1 |
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| CDS TCA 72 bp | GGCAAGTATTTTCTGAGAAGTCTTTGGTGTAGTCTCTaGCCCTTCAACTTTGGCCAGCCATCTGTCAATTGC | + |
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Preference number: 6 (lower is better) Translates to: GKYFLRSLWCSL*PFNFGQPSVNC Trigger: GCAATTGACAGATGGCTGGCCAAAGTTGAAGGGTCAGAGACTACACCAAAGACTTCTCAGAAAATACTTGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000314481.3 |
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| CDS TCA 72 bp | CAGGATATGTTTAACAACCCTGAATATCTTTCCAAGTaGGAGCCTCCTAGGCAAGTATTTTCTGAGAAGTCT | + |
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Preference number: 6 (lower is better) Translates to: QDMFNNPEYLSK*EPPRQVFSEKS Trigger: AGACTTCTCAGAAAATACTTGCCTAGGAGGCTCTCACTTGGAAAGATATTCAGGGTTGTTAAACATATCCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000314481.3 |
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| CDS CAA 72 bp | TTGACTGTAGACGAGTCTTTCAAAATGCATTGTAATTaGTCCTTCTGTGAATCCAGGCAGCGATCAACTCAT | + |
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Preference number: 6 (lower is better) Translates to: LTVDESFKMHCN*SFCESRQRSTH Trigger: ATGAGTTGATCGCTGCCTGGATTCACAGAAGGACAAATTACAATGCATTTTGAAAGACTCGTCTACAGTCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658538.1 |
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| CDS TCA 72 bp | TTATCTGAGCACACACTGTCTGAATTCAGATCAGTGTaGTCCATAAATTGTATAAACTCCATGCCAACCTAC | + |
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Preference number: 6 (lower is better) Translates to: LSEHTLSEFRSV*SINCINSMPTY Trigger: GTAGGTTGGCATGGAGTTTATACAATTTATGGATCACACTGATCTGAATTCAGACAGTGTGTGCTCAGATAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000314481.3 ENST00000658538.1 |
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| CDS CAA 72 bp | TTGACTGTAGACGAGTCTTTCAAAATGCATTGTAATTaGTCCTTCTGTGAATCCAGGCAGCGATCAACAATA | + |
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Preference number: 6 (lower is better) Translates to: LTVDESFKMHCN*SFCESRQRSTI Trigger: TATTGTTGATCGCTGCCTGGATTCACAGAAGGACAAATTACAATGCATTTTGAAAGACTCGTCTACAGTCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000314481.3 |
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| CDS TCA 72 bp | TTACCTATAATATCTTTGAGTTACCTACAAAGTATATaGCACTGTCCTACCCGTGACAGAAATGAAGTAGAC | + |
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Preference number: 6 (lower is better) Translates to: LPIISLSYLQSI*HCPTRDRNEVD Trigger: GTCTACTTCATTTCTGTCACGGGTAGGACAGTGTCATATACTTTGTAGGTAACTCAAAGATATTATAGGTAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000314481.3 |
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| CDS CCA 72 bp | GTTGCATATGAGATAATGAAAGAAGCTCAGTGTAAATaGTCAGAAGAAACATTTGCCTTTCAAGGTTTTCTA | + |
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Preference number: 6 (lower is better) Translates to: VAYEIMKEAQCK*SEETFAFQGFL Trigger: TAGAAAACCTTGAAAGGCAAATGTTTCTTCTGACCATTTACACTGAGCTTCTTTCATTATCTCATATGCAAC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000314481.3 |
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