Pregenerated sensors for LINC02877 (Homo sapiens)
Ensembl gene IDs: ENSG00000237787Ensembl transcript IDs: ENST00000462835.1, ENST00000623038.1, ENST00000648073.1
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GCAAGTTGGATCCTGACCAGCTTCTGCAGATCACATACATGCATATaGCTATTGTTTAGAGGTTTCAATTCTTTGCTGCATGGGCCTCTC | + |
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Preference number: 5 (lower is better) Translates to: ASWILTSFCRSHTCI*LLFRGFNSLLHGPL Trigger: GAGAGGCCCATGCAGCAAAGAATTGAAACCTCTAAACAATAGCCATATGCATGTATGTGATCTGCAGAAGCTGGTCAGGATCCAACTTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648073.1 |
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| CDS GCA 90 bp | AGTAGGCAGAAGATGGCAACTGAACATCCATGGAAATGTAGTAAATaGAAGTTGGATCCTGACCAGCTTCTGCAGATCACATACATGCAT | + |
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Preference number: 5 (lower is better) Translates to: SRQKMATEHPWKCSK*KLDPDQLLQITYMH Trigger: ATGCATGTATGTGATCTGCAGAAGCTGGTCAGGATCCAACTTGCATTTACTACATTTCCATGGATGTTCAGTTGCCATCTTCTGCCTACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000623038.1 ENST00000648073.1 |
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| CDS GCA 90 bp | GTAGGGCAGATGTTACAAGTGACTGGCATCTGTTTGATACTGGTTTaGAAAGGAGCCTCTCTGTATTTCAGTTCCTCCTTGAATCTTCTT | + |
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Preference number: 5 (lower is better) Translates to: VGQMLQVTGICLILV*KGASLYFSSSLNLL Trigger: AAGAAGATTCAAGGAGGAACTGAAATACAGAGAGGCTCCTTTGCAAACCAGTATCAAACAGATGCCAGTCACTTGTAACATCTGCCCTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000623038.1 ENST00000648073.1 |
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| CDS GCA 90 bp | GTAAATGCAAGTTGGATCCTGACCAGCTTCTGCAGATCACATACATaGATATGGCTATTGTTTAGAGGTTTCAATTCTTTGCTGCATGGG | + |
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Preference number: 5 (lower is better) Translates to: VNASWILTSFCRSHT*IWLLFRGFNSLLHG Trigger: CCCATGCAGCAAAGAATTGAAACCTCTAAACAATAGCCATATGCATGTATGTGATCTGCAGAAGCTGGTCAGGATCCAACTTGCATTTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648073.1 |
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| CDS CCA 90 bp | AGAAGATGGCAACTGAACATCCATGGAAATGTAGTAAATGCAAGTTaGATCCTGACCAGCTTCTGCAGATCACATACATGCATCTGTACT | + |
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Preference number: 5 (lower is better) Translates to: RRWQLNIHGNVVNAS*ILTSFCRSHTCICT Trigger: AGTACAGATGCATGTATGTGATCTGCAGAAGCTGGTCAGGATCCAACTTGCATTTACTACATTTCCATGGATGTTCAGTTGCCATCTTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000623038.1 |
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| CDS CCA 90 bp | AGAAGATGGCAACTGAACATCCATGGAAATGTAGTAAATGCAAGTTaGATCCTGACCAGCTTCTGCAGATCACATACATGCATATGGCTA | + |
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Preference number: 5 (lower is better) Translates to: RRWQLNIHGNVVNAS*ILTSFCRSHTCIWL Trigger: TAGCCATATGCATGTATGTGATCTGCAGAAGCTGGTCAGGATCCAACTTGCATTTACTACATTTCCATGGATGTTCAGTTGCCATCTTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648073.1 |
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| CDS TCA 72 bp | CTCAGGGCTTCTGTGGGCCTGGAATCTGGTAGCAGATaGGCTAAGCGGTTTTGGTGCAAAATCTCTATAAGA | + |
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Preference number: 6 (lower is better) Translates to: LRASVGLESGSR*AKRFWCKISIR Trigger: TCTTATAGAGATTTTGCACCAAAACCGCTTAGCTCATCTGCTACCAGATTCCAGGCCCACAGAAGCCCTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000462835.1 |
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| CDS CCA 72 bp | CTCAGGAGTAGGCAGAAGATGGCAACTGAACATCCATaGAAATGTAGTAAATGCAAGTTGGATCCTGACCAG | + |
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Preference number: 6 (lower is better) Translates to: LRSRQKMATEHP*KCSKCKLDPDQ Trigger: CTGGTCAGGATCCAACTTGCATTTACTACATTTCCATGGATGTTCAGTTGCCATCTTCTGCCTACTCCTGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000623038.1 ENST00000648073.1 |
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| CDS CAA 90 bp | GGTAGGGCAGATGTTACAAGTGACTGGCATCTGTTTGATACTGGTTaGCAAAGGAGCCTCTCTGTATTTCAGTTCCTCCTTGAATCTTCT | + |
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Preference number: 6 (lower is better) Translates to: GRADVTSDWHLFDTG*QRSLSVFQFLLESS Trigger: AGAAGATTCAAGGAGGAACTGAAATACAGAGAGGCTCCTTTGCAAACCAGTATCAAACAGATGCCAGTCACTTGTAACATCTGCCCTACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000623038.1 ENST00000648073.1 |
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| CDS CAA 90 bp | GTTATTCCAATGGTAGGGCAGATGTTACAAGTGACTGGCATCTGTTaGATACTGGTTTGCAAAGGAGCCTCTCTGTATTTCAGTTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: VIPMVGQMLQVTGIC*ILVCKGASLYFSSS Trigger: GGAGGAACTGAAATACAGAGAGGCTCCTTTGCAAACCAGTATCAAACAGATGCCAGTCACTTGTAACATCTGCCCTACCATTGGAATAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000623038.1 ENST00000648073.1 |
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| CDS CCA 72 bp | ATGGGCCTCTCTTGTAGTGCTACTCACCATGGCAGGTaGATTCCCCAGAACGATAATGATTTTTGTAACTTT | + |
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Preference number: 6 (lower is better) Translates to: MGLSCSATHHGR*IPQNDNDFCNF Trigger: AAAGTTACAAAAATCATTATCGTTCTGGGGAATCCACCTGCCATGGTGAGTAGCACTACAAGAGAGGCCCAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000462835.1 |
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| CDS CAA 90 bp | CAGAAGATGGCAACTGAACATCCATGGAAATGTAGTAAATGCAAGTaGGATCCTGACCAGCTTCTGCAGATCACATACATGCATCTGTAC | + |
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Preference number: 6 (lower is better) Translates to: QKMATEHPWKCSKCK*DPDQLLQITYMHLY Trigger: GTACAGATGCATGTATGTGATCTGCAGAAGCTGGTCAGGATCCAACTTGCATTTACTACATTTCCATGGATGTTCAGTTGCCATCTTCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000623038.1 |
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| CDS CAA 90 bp | CAGAAGATGGCAACTGAACATCCATGGAAATGTAGTAAATGCAAGTaGGATCCTGACCAGCTTCTGCAGATCACATACATGCATATGGCT | + |
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Preference number: 6 (lower is better) Translates to: QKMATEHPWKCSKCK*DPDQLLQITYMHMA Trigger: AGCCATATGCATGTATGTGATCTGCAGAAGCTGGTCAGGATCCAACTTGCATTTACTACATTTCCATGGATGTTCAGTTGCCATCTTCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648073.1 |
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| CDS GCA 72 bp | ATGTTACAAGTGACTGGCATCTGTTTGATACTGGTTTaGAAAGGAGCCTCTCTGTATTTCAGTTCCTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: MLQVTGICLILV*KGASLYFSSSL Trigger: CAAGGAGGAACTGAAATACAGAGAGGCTCCTTTGCAAACCAGTATCAAACAGATGCCAGTCACTTGTAACAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000623038.1 ENST00000648073.1 |
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| CDS GCA 72 bp | CATGCATATGGCTATTGTTTAGAGGTTTCAATTCTTTaGTGCATGGGCCTCTCTTGTAGTGCTACTCACCAT | + |
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Preference number: 6 (lower is better) Translates to: HAYGYCLEVSIL*CMGLSCSATHH Trigger: ATGGTGAGTAGCACTACAAGAGAGGCCCATGCAGCAAAGAATTGAAACCTCTAAACAATAGCCATATGCATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648073.1 |
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| CDS CCA 72 bp | CAACTGAACATCCATGGAAATGTAGTAAATGCAAGTTaGATCCTGACCAGCTTCTGCAGATCACATACATGC | + |
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Preference number: 6 (lower is better) Translates to: QLNIHGNVVNAS*ILTSFCRSHTC Trigger: GCATGTATGTGATCTGCAGAAGCTGGTCAGGATCCAACTTGCATTTACTACATTTCCATGGATGTTCAGTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000623038.1 ENST00000648073.1 |
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| CDS CAA 72 bp | GCAACTGAACATCCATGGAAATGTAGTAAATGCAAGTaGGATCCTGACCAGCTTCTGCAGATCACATACATG | + |
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Preference number: 6 (lower is better) Translates to: ATEHPWKCSKCK*DPDQLLQITYM Trigger: CATGTATGTGATCTGCAGAAGCTGGTCAGGATCCAACTTGCATTTACTACATTTCCATGGATGTTCAGTTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000623038.1 ENST00000648073.1 |
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| CDS CAA 72 bp | ACCAGCTTCTGCAGATCACATACATGCATATGGCTATaGTTTAGAGGTTTCAATTCTTTGCTGCATGGGCCT | + |
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Preference number: 6 (lower is better) Translates to: TSFCRSHTCIWL*FRGFNSLLHGP Trigger: AGGCCCATGCAGCAAAGAATTGAAACCTCTAAACAATAGCCATATGCATGTATGTGATCTGCAGAAGCTGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648073.1 |
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| CDS TCA 72 bp | TTTGCAAAGGAGCCTCTCTGTATTTCAGTTCCTCCTTaGATCTTCTTTCCTGGTTGCAAAATTGCCTGCAAA | + |
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Preference number: 6 (lower is better) Translates to: FAKEPLCISVPP*IFFPGCKIACK Trigger: TTTGCAGGCAATTTTGCAACCAGGAAAGAAGATTCAAGGAGGAACTGAAATACAGAGAGGCTCCTTTGCAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000623038.1 |
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| CDS GCA 72 bp | TACTTACATGGCTATTGTTTAGAGGTTTCAATTCTTTaGTGCATGGGCCTCTCTTGTAGTGCTACTCACCAT | + |
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Preference number: 6 (lower is better) Translates to: YLHGYCLEVSIL*CMGLSCSATHH Trigger: ATGGTGAGTAGCACTACAAGAGAGGCCCATGCAGCAAAGAATTGAAACCTCTAAACAATAGCCATGTAAGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000462835.1 |
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| CDS CCA 72 bp | TTTCTCTTGGATGAAAGCTCAGGAGTAGGCAGAAGATaGCAACTGAACATCCATGGAAATGTAGTAAATGCA | + |
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Preference number: 6 (lower is better) Translates to: FLLDESSGVGRR*QLNIHGNVVNA Trigger: TGCATTTACTACATTTCCATGGATGTTCAGTTGCCATCTTCTGCCTACTCCTGAGCTTTCATCCAAGAGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000623038.1 ENST00000648073.1 |
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| CDS CAA 72 bp | AGTCTTTTAGAAGAGTGGCAGGGTGCCCATATAAAATaGGCATTTGGGTTAGACAACCGGAAGTCTTGTAAA | + |
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Preference number: 6 (lower is better) Translates to: SLLEEWQGAHIK*AFGLDNRKSCK Trigger: TTTACAAGACTTCCGGTTGTCTAACCCAAATGCCAATTTTATATGGGCACCCTGCCACTCTTCTAAAAGACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000623038.1 ENST00000648073.1 |
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| CDS GCA 72 bp | AGTTGGATCCTGACCAGCTTCTGCAGATCACATACATaGATATGGCTATTGTTTAGAGGTTTCAATTCTTTG | + |
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Preference number: 6 (lower is better) Translates to: SWILTSFCRSHT*IWLLFRGFNSL Trigger: CAAAGAATTGAAACCTCTAAACAATAGCCATATGCATGTATGTGATCTGCAGAAGCTGGTCAGGATCCAACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648073.1 |
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| CDS GCA 72 bp | TTTAAGGAGGCTTTCCTAAAGTCCCACAAAACACTTTaGTTAAATCTCGTTGACCAGAATGAAGTTACCTGG | + |
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Preference number: 6 (lower is better) Translates to: FKEAFLKSHKTL*LNLVDQNEVTW Trigger: CCAGGTAACTTCATTCTGGTCAACGAGATTTAAGCAAAGTGTTTTGTGGGACTTTAGGAAAGCCTCCTTAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000648073.1 |
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| CDS CCA 72 bp | ATCCTGACCAGCTTCTGCAGATCACATACATGCATATaGCTATTGTTTAGAGGTTTCAATTCTTTGCTGCAT | + |
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Preference number: 6 (lower is better) Translates to: ILTSFCRSHTCI*LLFRGFNSLLH Trigger: ATGCAGCAAAGAATTGAAACCTCTAAACAATAGCCATATGCATGTATGTGATCTGCAGAAGCTGGTCAGGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648073.1 |
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| CDS GCA 72 bp | AATGTAGTAAATGCAAGTTGGATCCTGACCAGCTTCTaGAGATCACATACATGCATATGGCTATTGTTTAGA | + |
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Preference number: 6 (lower is better) Translates to: NVVNASWILTSF*RSHTCIWLLFR Trigger: TCTAAACAATAGCCATATGCATGTATGTGATCTGCAGAAGCTGGTCAGGATCCAACTTGCATTTACTACATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648073.1 |
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| CDS CAA 72 bp | GATTTTTGTAACTTTAGTAAAAATCCTCAGCCGTGTTaGCAGCCTTCTGTGGTAGAATCCAGTAGTGATTGT | + |
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Preference number: 6 (lower is better) Translates to: DFCNFSKNPQPC*QPSVVESSSDC Trigger: ACAATCACTACTGGATTCTACCACAGAAGGCTGCAAACACGGCTGAGGATTTTTACTAAAGTTACAAAAATC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000462835.1 |
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| CDS CAA 72 bp | GCTAAGAATCCATTTCCAAACTTACTTACATGGCTATaGTTTAGAGGTTTCAATTCTTTGCTGCATGGGCCT | + |
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Preference number: 6 (lower is better) Translates to: AKNPFPNLLTWL*FRGFNSLLHGP Trigger: AGGCCCATGCAGCAAAGAATTGAAACCTCTAAACAATAGCCATGTAAGTAAGTTTGGAAATGGATTCTTAGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000462835.1 |
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