Pregenerated sensors for LINC02871 (Homo sapiens)
Ensembl gene IDs: ENSG00000125899Ensembl transcript IDs: ENST00000378252.2, ENST00000659767.1, ENST00000662726.1
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AGTGTAGATGCAGAGACGGCTGCCCTCACCTCCTGCTGTGCAGCCTaGTTCCTAACAGGCCACAGACTGGTACTGGTTCTTGGCCTGGGA | + |
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Preference number: 5 (lower is better) Translates to: SVDAETAALTSCCAA*FLTGHRLVLVLGLG Trigger: TCCCAGGCCAAGAACCAGTACCAGTCTGTGGCCTGTTAGGAACCAGGCTGCACAGCAGGAGGTGAGGGCAGCCGTCTCTGCATCTACACT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659767.1 |
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| CDS GCA 90 bp | TACCAAGAGTGTAGATGCAGAGACGGCTGCCCTCACCTCCTGCTGTaGAGCCTGGTTCCTAACAGGCCACAGACTGGTACTGGTTCTTGG | + |
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Preference number: 5 (lower is better) Translates to: YQECRCRDGCPHLLL*SLVPNRPQTGTGSW Trigger: CCAAGAACCAGTACCAGTCTGTGGCCTGTTAGGAACCAGGCTGCACAGCAGGAGGTGAGGGCAGCCGTCTCTGCATCTACACTCTTGGTA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659767.1 |
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| CDS TCA 90 bp | GTCTGTGGTCCCTGTGGTAGTCTAGGCAATGGTGAGACTGGAAGTTaGCTGTCTGTTGGCCGAGGCAATGGAGGTTATTGGGCCGTGGGT | + |
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Preference number: 5 (lower is better) Translates to: VCGPCGSLGNGETGS*LSVGRGNGGYWAVG Trigger: ACCCACGGCCCAATAACCTCCATTGCCTCGGCCAACAGACAGTCAACTTCCAGTCTCACCATTGCCTAGACTACCACAGGGACCACAGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659767.1 |
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| CDS GCA 90 bp | TCAATTACCAAGAGTGTAGATGCAGAGACGGCTGCCCTCACCTCCTaGTGTGCAGCCTGGTTCCTAACAGGCCACAGACTGGTACTGGTT | + |
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Preference number: 5 (lower is better) Translates to: SITKSVDAETAALTS*CAAWFLTGHRLVLV Trigger: AACCAGTACCAGTCTGTGGCCTGTTAGGAACCAGGCTGCACAGCAGGAGGTGAGGGCAGCCGTCTCTGCATCTACACTCTTGGTAATTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659767.1 |
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| CDS CCA 90 bp | AGCAATTTAGGCTGGACTCAGCTGGATGTTTCTTCTTGTCTTGGCTaGGCACCGTTATGTGTCTGTGGTCCCTGTGGTAGTCTAGGCAAT | + |
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Preference number: 5 (lower is better) Translates to: SNLGWTQLDVSSCLG*APLCVCGPCGSLGN Trigger: ATTGCCTAGACTACCACAGGGACCACAGACACATAACGGTGCCCAGCCAAGACAAGAAGAAACATCCAGCTGAGTCCAGCCTAAATTGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659767.1 ENST00000662726.1 |
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| CDS TCA 90 bp | TCTCACACTGGCGAAGGAGCATCTTCTATCATAAGCTCCGGGAAGTaGTGCATCTTTTTGCCATCCACAGAAAAAGGAAAGGACCATGTG | + |
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Preference number: 5 (lower is better) Translates to: SHTGEGASSIISSGK*CIFLPSTEKGKDHV Trigger: CACATGGTCCTTTCCTTTTTCTGTGGATGGCAAAAAGATGCATCACTTCCCGGAGCTTATGATAGAAGATGCTCCTTCGCCAGTGTGAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000662726.1 |
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| CDS TCA 90 bp | CCCAGAGCTTCTGACTCAGAAATTTGGGGAATAGCCCCAAGAATTTaGATTTCTAAGAAGTTCCCAGTTGATACTGATGCTGTTGGTCCC | + |
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Preference number: 5 (lower is better) Translates to: PRASDSEIWGIAPRI*ISKKFPVDTDAVGP Trigger: GGGACCAACAGCATCAGTATCAACTGGGAACTTCTTAGAAATTCAAATTCTTGGGGCTATTCCCCAAATTTCTGAGTCAGAAGCTCTGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659767.1 |
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| CDS TCA 90 bp | TTCTGTATTCTGAACAGGGCTATAAAAAGTGTCTTCATCACAGTTTaGAAAATGCCAACCAAGATCAAGAAGTATGTCCATTCCAGATTA | + |
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Preference number: 5 (lower is better) Translates to: FCILNRAIKSVFITV*KMPTKIKKYVHSRL Trigger: TAATCTGGAATGGACATACTTCTTGATCTTGGTTGGCATTTTTCAAACTGTGATGAAGACACTTTTTATAGCCCTGTTCAGAATACAGAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000378252.2 ENST00000659767.1 ENST00000662726.1 |
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| CDS CCA 72 bp | GCAGAGACGGCTGCCCTCACCTCCTGCTGTGCAGCCTaGTTCCTAACAGGCCACAGACTGGTACTGGTTCTT | + |
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Preference number: 6 (lower is better) Translates to: AETAALTSCCAA*FLTGHRLVLVL Trigger: AAGAACCAGTACCAGTCTGTGGCCTGTTAGGAACCAGGCTGCACAGCAGGAGGTGAGGGCAGCCGTCTCTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659767.1 |
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| CDS GCA 72 bp | TGTAGATGCAGAGACGGCTGCCCTCACCTCCTGCTGTaGAGCCTGGTTCCTAACAGGCCACAGACTGGTACT | + |
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Preference number: 6 (lower is better) Translates to: CRCRDGCPHLLL*SLVPNRPQTGT Trigger: AGTACCAGTCTGTGGCCTGTTAGGAACCAGGCTGCACAGCAGGAGGTGAGGGCAGCCGTCTCTGCATCTACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659767.1 |
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| CDS GCA 72 bp | AAGAGTGTAGATGCAGAGACGGCTGCCCTCACCTCCTaGTGTGCAGCCTGGTTCCTAACAGGCCACAGACTG | + |
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Preference number: 6 (lower is better) Translates to: KSVDAETAALTS*CAAWFLTGHRL Trigger: CAGTCTGTGGCCTGTTAGGAACCAGGCTGCACAGCAGGAGGTGAGGGCAGCCGTCTCTGCATCTACACTCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659767.1 |
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| CDS GCA 72 bp | GAGCAGCCACAAAGTCTCAATTACCAAGAGTGTAGATaGAGAGACGGCTGCCCTCACCTCCTGCTGTGCAGC | + |
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Preference number: 6 (lower is better) Translates to: EQPQSLNYQECR*RDGCPHLLLCS Trigger: GCTGCACAGCAGGAGGTGAGGGCAGCCGTCTCTGCATCTACACTCTTGGTAATTGAGACTTTGTGGCTGCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659767.1 |
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| CDS CAA 72 bp | AAGTTGACTGTCTGTTGGCCGAGGCAATGGAGGTTATaGGGCCGTGGGTCTCTCATCCTCCAGTGGACTAAC | + |
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Preference number: 6 (lower is better) Translates to: KLTVCWPRQWRL*GRGSLILQWTN Trigger: GTTAGTCCACTGGAGGATGAGAGACCCACGGCCCAATAACCTCCATTGCCTCGGCCAACAGACAGTCAACTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659767.1 |
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| CDS TCA 72 bp | CCCTGTGGTAGTCTAGGCAATGGTGAGACTGGAAGTTaGCTGTCTGTTGGCCGAGGCAATGGAGGTTATTGG | + |
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Preference number: 6 (lower is better) Translates to: PCGSLGNGETGS*LSVGRGNGGYW Trigger: CCAATAACCTCCATTGCCTCGGCCAACAGACAGTCAACTTCCAGTCTCACCATTGCCTAGACTACCACAGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659767.1 |
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| CDS CAA 72 bp | CAGCAATTTAGGCTGGACTCAGCTGGATGTTTCTTCTaGTCTTGGCTGGGCACCGTTATGTGTCTGTGGTCC | + |
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Preference number: 6 (lower is better) Translates to: QQFRLDSAGCFF*SWLGTVMCLWS Trigger: GGACCACAGACACATAACGGTGCCCAGCCAAGACAAGAAGAAACATCCAGCTGAGTCCAGCCTAAATTGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659767.1 ENST00000662726.1 |
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| CDS CCA 72 bp | TGGAGGTTATTGGGCCGTGGGTCTCTCATCCTCCAGTaGACTAACCAAGAGGGAACAGAATCTTTCAAGACT | + |
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Preference number: 6 (lower is better) Translates to: WRLLGRGSLILQ*TNQEGTESFKT Trigger: AGTCTTGAAAGATTCTGTTCCCTCTTGGTTAGTCCACTGGAGGATGAGAGACCCACGGCCCAATAACCTCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659767.1 |
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| CDS CCA 72 bp | TGCAGCCTTCTCCCTCAAACCCTGCTACAAGAAGGTTaGAGCAAAGAGGAGATATATACTTCCTCTGGACTT | + |
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Preference number: 6 (lower is better) Translates to: CSLLPQTLLQEG*SKEEIYTSSGL Trigger: AAGTCCAGAGGAAGTATATATCTCCTCTTTGCTCCAACCTTCTTGTAGCAGGGTTTGAGGGAGAAGGCTGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000378252.2 ENST00000662726.1 |
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| CDS CCA 72 bp | CTCCCTCAAACAATTCTGCAGATCAGCAATTTAGGCTaGACTCAGCTGGATGTTTCTTCTTGTCTTGGCTGG | + |
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Preference number: 6 (lower is better) Translates to: LPQTILQISNLG*TQLDVSSCLGW Trigger: CCAGCCAAGACAAGAAGAAACATCCAGCTGAGTCCAGCCTAAATTGCTGATCTGCAGAATTGTTTGAGGGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659767.1 |
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| CDS CCA 72 bp | CCCAAGTTTTCAATTCTGCAGATCAGCAATTTAGGCTaGACTCAGCTGGATGTTTCTTCTTGTCTTGGCTGG | + |
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Preference number: 6 (lower is better) Translates to: PKFSILQISNLG*TQLDVSSCLGW Trigger: CCAGCCAAGACAAGAAGAAACATCCAGCTGAGTCCAGCCTAAATTGCTGATCTGCAGAATTGAAAACTTGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662726.1 |
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| CDS CAA 72 bp | GAATTTCTAAGAAGTTCCCAGTTGATACTGATGCTGTaGGTCCCAGGATCACAGTCCATGGACTTTGTCAAG | + |
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Preference number: 6 (lower is better) Translates to: EFLRSSQLILML*VPGSQSMDFVK Trigger: CTTGACAAAGTCCATGGACTGTGATCCTGGGACCAACAGCATCAGTATCAACTGGGAACTTCTTAGAAATTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659767.1 |
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| CDS TCA 72 bp | GTATTTAACCCGCAAGAAGATGAAGAAAGTAGTTTTTaGGGAGCATTGTCAGGGCAACTCCAAGAAGATATA | + |
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Preference number: 6 (lower is better) Translates to: VFNPQEDEESSF*GALSGQLQEDI Trigger: TATATCTTCTTGGAGTTGCCCTGACAATGCTCCTCAAAAACTACTTTCTTCATCTTCTTGCGGGTTAAATAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000378252.2 ENST00000659767.1 |
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| CDS TCA 72 bp | TCTGACTCAGAAATTTGGGGAATAGCCCCAAGAATTTaGATTTCTAAGAAGTTCCCAGTTGATACTGATGCT | + |
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Preference number: 6 (lower is better) Translates to: SDSEIWGIAPRI*ISKKFPVDTDA Trigger: AGCATCAGTATCAACTGGGAACTTCTTAGAAATTCAAATTCTTGGGGCTATTCCCCAAATTTCTGAGTCAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659767.1 |
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| CDS TCA 72 bp | CATTCAGTTTGTAAAAGCCATCAAGCCATTTGCTTATaGCAATGTCACTTCTCTGCATGTGTGTCATACTTC | + |
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Preference number: 6 (lower is better) Translates to: HSVCKSHQAICL*QCHFSACVSYF Trigger: GAAGTATGACACACATGCAGAGAAGTGACATTGTCATAAGCAAATGGCTTGATGGCTTTTACAAACTGAATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662726.1 |
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| CDS CCA 72 bp | TTTTTGGCAAATCCCAAGATGAGATCACAATTATGGTaGAAGAGTTTAGTACAATTACCTATTCTGCCAGAG | + |
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Preference number: 6 (lower is better) Translates to: FLANPKMRSQLW*KSLVQLPILPE Trigger: CTCTGGCAGAATAGGTAATTGTACTAAACTCTTCCACCATAATTGTGATCTCATCTTGGGATTTGCCAAAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000662726.1 |
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| CDS CAA 72 bp | TCTGAACAGGGCTATAAAAAGTGTCTTCATCACAGTTaGAAAAATGCCAACCAAGATCAAGAAGTATGTCCA | + |
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Preference number: 6 (lower is better) Translates to: SEQGYKKCLHHS*KNANQDQEVCP Trigger: TGGACATACTTCTTGATCTTGGTTGGCATTTTTCAAACTGTGATGAAGACACTTTTTATAGCCCTGTTCAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENST00000378252.2 ENST00000659767.1 ENST00000662726.1 |
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| CDS CAA 90 bp | CTTCTGTATTCTGAACAGGGCTATAAAAAGTGTCTTCATCACAGTTaGAAAAATGCCAACCAAGATCAAGAAGTATGTCCATTCCAGATT | + |
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Preference number: 6 (lower is better) Translates to: LLYSEQGYKKCLHHS*KNANQDQEVCPFQI Trigger: AATCTGGAATGGACATACTTCTTGATCTTGGTTGGCATTTTTCAAACTGTGATGAAGACACTTTTTATAGCCCTGTTCAGAATACAGAAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENST00000378252.2 ENST00000659767.1 ENST00000662726.1 |
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