Pregenerated sensors for LINC02868 (Homo sapiens)
Ensembl gene IDs: ENSG00000203864Ensembl transcript IDs: ENST00000624685.1
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CTGAGGCTTACATACCTTCAGGGTCAGGTTGGTTTCCTGAGGCAGTaGGCCAGGGAAGGAGGACTGATGGTGATGTTGCCTCATTTGGAT | + |
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Preference number: 5 (lower is better) Translates to: LRLTYLQGQVGFLRQ*AREGGLMVMLPHLD Trigger: ATCCAAATGAGGCAACATCACCATCAGTCCTCCTTCCCTGGCTCACTGCCTCAGGAAACCAACCTGACCCTGAAGGTATGTAAGCCTCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000624685.1 |
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| CDS CCA 90 bp | GGACTCAATGAAAAAGCAACTGCTCAAGGTTGGATCCAACTTTTGTaGGGCCTGAGGCTTACATACCTTCAGGGTCAGGTTGGTTTCCTG | + |
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Preference number: 5 (lower is better) Translates to: GLNEKATAQGWIQLL*GLRLTYLQGQVGFL Trigger: CAGGAAACCAACCTGACCCTGAAGGTATGTAAGCCTCAGGCCCCACAAAAGTTGGATCCAACCTTGAGCAGTTGCTTTTTCATTGAGTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000624685.1 |
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| CDS TCA 90 bp | TATACTGTAATTGAAGTTTCCCTTCTGCTACCCTCCACAGGAACCTaGGCTCCACAGGACTCAATGAAAAAGCAACTGCTCAAGGTTGGA | + |
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Preference number: 5 (lower is better) Translates to: YTVIEVSLLLPSTGT*APQDSMKKQLLKVG Trigger: TCCAACCTTGAGCAGTTGCTTTTTCATTGAGTCCTGTGGAGCTCAGGTTCCTGTGGAGGGTAGCAGAAGGGAAACTTCAATTACAGTATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000624685.1 |
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| CDS CCA 90 bp | TCACAAAAGCTCCGTAGATGTGGCCAACAAAATTGCTCCATAAATTaGACACTGCCCAAAGAAGTCTTTAACGCCATTCCTGGGTTCTTT | + |
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Preference number: 5 (lower is better) Translates to: SQKLRRCGQQNCSIN*TLPKEVFNAIPGFF Trigger: AAAGAACCCAGGAATGGCGTTAAAGACTTCTTTGGGCAGTGTCCAATTTATGGAGCAATTTTGTTGGCCACATCTACGGAGCTTTTGTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000624685.1 |
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| CDS CCA 72 bp | GTGGGGCCTGAGGCTTACATACCTTCAGGGTCAGGTTaGTTTCCTGAGGCAGTGAGCCAGGGAAGGAGGACT | + |
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Preference number: 6 (lower is better) Translates to: VGPEAYIPSGSG*FPEAVSQGRRT Trigger: AGTCCTCCTTCCCTGGCTCACTGCCTCAGGAAACCAACCTGACCCTGAAGGTATGTAAGCCTCAGGCCCCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000624685.1 |
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| CDS TCA 72 bp | ATTGAAGTTTCCCTTCTGCTACCCTCCACAGGAACCTaGGCTCCACAGGACTCAATGAAAAAGCAACTGCTC | + |
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Preference number: 6 (lower is better) Translates to: IEVSLLLPSTGT*APQDSMKKQLL Trigger: GAGCAGTTGCTTTTTCATTGAGTCCTGTGGAGCTCAGGTTCCTGTGGAGGGTAGCAGAAGGGAAACTTCAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000624685.1 |
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| CDS CAA 90 bp | ACAGGACTCAATGAAAAAGCAACTGCTCAAGGTTGGATCCAACTTTaGTGGGGCCTGAGGCTTACATACCTTCAGGGTCAGGTTGGTTTC | + |
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Preference number: 6 (lower is better) Translates to: TGLNEKATAQGWIQL*WGLRLTYLQGQVGF Trigger: GAAACCAACCTGACCCTGAAGGTATGTAAGCCTCAGGCCCCACAAAAGTTGGATCCAACCTTGAGCAGTTGCTTTTTCATTGAGTCCTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000624685.1 |
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| CDS TCA 72 bp | TACCCTCCACAGGAACCTGAGCTCCACAGGACTCAATaGAAAAGCAACTGCTCAAGGTTGGATCCAACTTTT | + |
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Preference number: 6 (lower is better) Translates to: YPPQEPELHRTQ*KSNCSRLDPTF Trigger: AAAAGTTGGATCCAACCTTGAGCAGTTGCTTTTTCATTGAGTCCTGTGGAGCTCAGGTTCCTGTGGAGGGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000624685.1 |
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| CDS CAA 72 bp | AATGAAAAAGCAACTGCTCAAGGTTGGATCCAACTTTaGTGGGGCCTGAGGCTTACATACCTTCAGGGTCAG | + |
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Preference number: 6 (lower is better) Translates to: NEKATAQGWIQL*WGLRLTYLQGQ Trigger: CTGACCCTGAAGGTATGTAAGCCTCAGGCCCCACAAAAGTTGGATCCAACCTTGAGCAGTTGCTTTTTCATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000624685.1 |
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