RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC02857 (Homo sapiens)

Ensembl gene IDs: ENSG00000230852

Ensembl transcript IDs: ENST00000444796.2

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp CCAGGGAGACTTGCTCTGTGGCCTCAGGTGGAGGCAGGTTTCAGCTaGGTGAGGGGAACTTCTGCCAGGTTGTCCAGAGAGTTCCCCCTT +
Preference number: 5 (lower is better)
Translates to: PGRLALWPQVEAGFS*VRGTSARLSREFPL
Trigger: AAGGGGGAACTCTCTGGACAACCTGGCAGAAGTTCCCCTCACTCAGCTGAAACCTGCCTCCACCTGAGGCCACAGAGCAAGTCTCCCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000444796.2
CDS TCA 90 bp GGGAACTTCTGCCAGGTTGTCCAGAGAGTTCCCCCTTGGTGGCTATaGTCTCGAACAGGCTGGATAAGCACCTGGGGTCCCTGCATGTGG +
Preference number: 5 (lower is better)
Translates to: GNFCQVVQRVPPWWL*SRTGWISTWGPCMW
Trigger: CCACATGCAGGGACCCCAGGTGCTTATCCAGCCTGTTCGAGATCATAGCCACCAAGGGGGAACTCTCTGGACAACCTGGCAGAAGTTCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000444796.2
CDS GCA 90 bp GATAAGCACCTGGGGTCCCTGCATGTGGAGAGGAGCTCATATTCCTaGAGTCCCACCTCATACTTCTGGAGTGGACAACATATCCTGAGT +
Preference number: 5 (lower is better)
Translates to: DKHLGSLHVERSSYS*SPTSYFWSGQHILS
Trigger: ACTCAGGATATGTTGTCCACTCCAGAAGTATGAGGTGGGACTGCAGGAATATGAGCTCCTCTCCACATGCAGGGACCCCAGGTGCTTATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000444796.2
CDS CCA 90 bp GGAGAGGAGCTCATATTCCTGCAGTCCCACCTCATACTTCTGGAGTaGACAACATATCCTGAGTTTCGGAGAGGCAGTACAAGAGGCAGT +
Preference number: 5 (lower is better)
Translates to: GEELIFLQSHLILLE*TTYPEFRRGSTRGS
Trigger: ACTGCCTCTTGTACTGCCTCTCCGAAACTCAGGATATGTTGTCCACTCCAGAAGTATGAGGTGGGACTGCAGGAATATGAGCTCCTCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000444796.2
CDS CCA 90 bp CATGTGGAGAGGAGCTCATATTCCTGCAGTCCCACCTCATACTTCTaGAGTGGACAACATATCCTGAGTTTCGGAGAGGCAGTACAAGAG +
Preference number: 5 (lower is better)
Translates to: HVERSSYSCSPTSYF*SGQHILSFGEAVQE
Trigger: CTCTTGTACTGCCTCTCCGAAACTCAGGATATGTTGTCCACTCCAGAAGTATGAGGTGGGACTGCAGGAATATGAGCTCCTCTCCACATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000444796.2
CDS CCA 90 bp CAAGAGGCAGTGAGAACACAGGATCAGAGTCAAAGAGGTCTTCATTaGAATCTCTGTTCTGCCACTAACTTGTTCTGTGCCTTGGTTTTT +
Preference number: 5 (lower is better)
Translates to: QEAVRTQDQSQRGLH*NLCSATNLFCALVF
Trigger: AAAAACCAAGGCACAGAACAAGTTAGTGGCAGAACAGAGATTCCAATGAAGACCTCTTTGACTCTGATCCTGTGTTCTCACTGCCTCTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000444796.2
CDS CCA 90 bp TGGGTAATGTGTAAAGAAAAGAGGTTTAATCAGCTCATGGTTCTGTaGTCTGTACAGGCTTCTGTTTCTGGGGAAGCCTCAGGAAACTTA +
Preference number: 5 (lower is better)
Translates to: WVMCKEKRFNQLMVL*SVQASVSGEASGNL
Trigger: TAAGTTTCCTGAGGCTTCCCCAGAAACAGAAGCCTGTACAGACCACAGAACCATGAGCTGATTAAACCTCTTTTCTTTACACATTACCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000444796.2
CDS TCA 72 bp CTCTGTGGCCTCAGGTGGAGGCAGGTTTCAGCTGAGTaGGGGGAACTTCTGCCAGGTTGTCCAGAGAGTTCC +
Preference number: 6 (lower is better)
Translates to: LCGLRWRQVSAE*GELLPGCPESS
Trigger: GGAACTCTCTGGACAACCTGGCAGAAGTTCCCCTCACTCAGCTGAAACCTGCCTCCACCTGAGGCCACAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000444796.2
CDS TCA 72 bp CTTGCTCTGTGGCCTCAGGTGGAGGCAGGTTTCAGCTaGGTGAGGGGAACTTCTGCCAGGTTGTCCAGAGAG +
Preference number: 6 (lower is better)
Translates to: LALWPQVEAGFS*VRGTSARLSRE
Trigger: CTCTCTGGACAACCTGGCAGAAGTTCCCCTCACTCAGCTGAAACCTGCCTCCACCTGAGGCCACAGAGCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000444796.2
CDS GCA 72 bp TCCAAATGTCTGAAGACCCAGAAGCCCAGGGAGACTTaGTCTGTGGCCTCAGGTGGAGGCAGGTTTCAGCTG +
Preference number: 6 (lower is better)
Translates to: SKCLKTQKPRET*SVASGGGRFQL
Trigger: CAGCTGAAACCTGCCTCCACCTGAGGCCACAGAGCAAGTCTCCCTGGGCTTCTGGGTCTTCAGACATTTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000444796.2
CDS GCA 72 bp CTGGGGTCCCTGCATGTGGAGAGGAGCTCATATTCCTaGAGTCCCACCTCATACTTCTGGAGTGGACAACAT +
Preference number: 6 (lower is better)
Translates to: LGSLHVERSSYS*SPTSYFWSGQH
Trigger: ATGTTGTCCACTCCAGAAGTATGAGGTGGGACTGCAGGAATATGAGCTCCTCTCCACATGCAGGGACCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000444796.2
CDS CCA 72 bp AGGAGCTCATATTCCTGCAGTCCCACCTCATACTTCTaGAGTGGACAACATATCCTGAGTTTCGGAGAGGCA +
Preference number: 6 (lower is better)
Translates to: RSSYSCSPTSYF*SGQHILSFGEA
Trigger: TGCCTCTCCGAAACTCAGGATATGTTGTCCACTCCAGAAGTATGAGGTGGGACTGCAGGAATATGAGCTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000444796.2
CDS CCA 72 bp CTCATATTCCTGCAGTCCCACCTCATACTTCTGGAGTaGACAACATATCCTGAGTTTCGGAGAGGCAGTACA +
Preference number: 6 (lower is better)
Translates to: LIFLQSHLILLE*TTYPEFRRGST
Trigger: TGTACTGCCTCTCCGAAACTCAGGATATGTTGTCCACTCCAGAAGTATGAGGTGGGACTGCAGGAATATGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000444796.2
CDS TCA 72 bp CTATCGCAAGAAAGTCAAGGGGGAAATTCACCCCTATaGTTCAATCACCTCCCACCTCCCACTGGTAATTAC +
Preference number: 6 (lower is better)
Translates to: LSQESQGGNSPL*FNHLPPPTGNY
Trigger: GTAATTACCAGTGGGAGGTGGGAGGTGATTGAATCATAGGGGTGAATTTCCCCCTTGACTTTCTTGCGATAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000444796.2
CDS CCA 72 bp GTGAGAACACAGGATCAGAGTCAAAGAGGTCTTCATTaGAATCTCTGTTCTGCCACTAACTTGTTCTGTGCC +
Preference number: 6 (lower is better)
Translates to: VRTQDQSQRGLH*NLCSATNLFCA
Trigger: GGCACAGAACAAGTTAGTGGCAGAACAGAGATTCCAATGAAGACCTCTTTGACTCTGATCCTGTGTTCTCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000444796.2
CDS CCA 72 bp ACATTTGCAGAAATTTTTCAGATGTCTACCAATAGGTaGGTCCAGCAATATCTAGCTTTGCAAACAAGGGCC +
Preference number: 6 (lower is better)
Translates to: TFAEIFQMSTNR*VQQYLALQTRA
Trigger: GGCCCTTGTTTGCAAAGCTAGATATTGCTGGACCCACCTATTGGTAGACATCTGAAAAATTTCTGCAAATGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000444796.2
CDS CAA 90 bp AATCTCCTTGTAATGATGGTTCTCCTGCAAAGTAAAGTGATGAAATaGATAGGGGAAGAATCCTGTAAGGAGAGATTTAGTCATGTGTAC +
Preference number: 6 (lower is better)
Translates to: NLLVMMVLLQSKVMK*IGEESCKERFSHVY
Trigger: GTACACATGACTAAATCTCTCCTTACAGGATTCTTCCCCTATCAATTTCATCACTTTACTTTGCAGGAGAACCATCATTACAAGGAGATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000444796.2
CDS CAA 72 bp GTAATGATGGTTCTCCTGCAAAGTAAAGTGATGAAATaGATAGGGGAAGAATCCTGTAAGGAGAGATTTAGT +
Preference number: 6 (lower is better)
Translates to: VMMVLLQSKVMK*IGEESCKERFS
Trigger: ACTAAATCTCTCCTTACAGGATTCTTCCCCTATCAATTTCATCACTTTACTTTGCAGGAGAACCATCATTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000444796.2
CDS CCA 72 bp CCAGTGTGTCAATATGTAATGATCAAACAGGGTAATTaGGATATCCATCACCTAAAGCATTTAACATTTCTT +
Preference number: 6 (lower is better)
Translates to: PVCQYVMIKQGN*DIHHLKHLTFL
Trigger: AAGAAATGTTAAATGCTTTAGGTGATGGATATCCCAATTACCCTGTTTGATCATTACATATTGACACACTGG
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000444796.2