Pregenerated sensors for LINC02856 (Homo sapiens)
Ensembl gene IDs: ENSG00000285594Ensembl transcript IDs: ENST00000649128.1
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CAGGTCCATCCTCCGACAGTTCGGAGACGAGAGCAGGGACCAGTGTaGTTCTGGAATAGGTATGAGGACGGGGACACCACACAGCTCATG | + |
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Preference number: 5 (lower is better) Translates to: QVHPPTVRRREQGPV*FWNRYEDGDTTQLM Trigger: CATGAGCTGTGTGGTGTCCCCGTCCTCATACCTATTCCAGAACCACACTGGTCCCTGCTCTCGTCTCCGAACTGTCGGAGGATGGACCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649128.1 |
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| CDS CCA 90 bp | CATCCTCCGACAGTTCGGAGACGAGAGCAGGGACCAGTGTGGTTCTaGAATAGGTATGAGGACGGGGACACCACACAGCTCATGTCCAGA | + |
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Preference number: 5 (lower is better) Translates to: HPPTVRRREQGPVWF*NRYEDGDTTQLMSR Trigger: TCTGGACATGAGCTGTGTGGTGTCCCCGTCCTCATACCTATTCCAGAACCACACTGGTCCCTGCTCTCGTCTCCGAACTGTCGGAGGATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649128.1 |
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| CDS GCA 90 bp | GCCTGGGTAAAAATCTTAAGCAACAACACAGGGAGTTCAGGTCCTTaGAAAAGCAGGTCCATCCTCCGACAGTTCGGAGACGAGAGCAGG | + |
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Preference number: 5 (lower is better) Translates to: AWVKILSNNTGSSGP*KSRSILRQFGDESR Trigger: CCTGCTCTCGTCTCCGAACTGTCGGAGGATGGACCTGCTTTTGCAAGGACCTGAACTCCCTGTGTTGTTGCTTAAGATTTTTACCCAGGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000649128.1 |
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| CDS CCA 90 bp | GGACGGGGACACCACACAGCTCATGTCCAGAGGATGGAATCGCTTTaGCTCTATGCCATTATCAGGACATTCTTCTGCTTCAAACTGGTC | + |
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Preference number: 5 (lower is better) Translates to: GRGHHTAHVQRMESL*LYAIIRTFFCFKLV Trigger: GACCAGTTTGAAGCAGAAGAATGTCCTGATAATGGCATAGAGCCAAAGCGATTCCATCCTCTGGACATGAGCTGTGTGGTGTCCCCGTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649128.1 |
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| CDS GCA 90 bp | ACACCACACAGCTCATGTCCAGAGGATGGAATCGCTTTGGCTCTATaGCATTATCAGGACATTCTTCTGCTTCAAACTGGTCGTCTCCTG | + |
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Preference number: 5 (lower is better) Translates to: TPHSSCPEDGIALAL*HYQDILLLQTGRLL Trigger: CAGGAGACGACCAGTTTGAAGCAGAAGAATGTCCTGATAATGGCATAGAGCCAAAGCGATTCCATCCTCTGGACATGAGCTGTGTGGTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649128.1 |
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| CDS CCA 90 bp | AATAGGTATGAGGACGGGGACACCACACAGCTCATGTCCAGAGGATaGAATCGCTTTGGCTCTATGCCATTATCAGGACATTCTTCTGCT | + |
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Preference number: 5 (lower is better) Translates to: NRYEDGDTTQLMSRG*NRFGSMPLSGHSSA Trigger: AGCAGAAGAATGTCCTGATAATGGCATAGAGCCAAAGCGATTCCATCCTCTGGACATGAGCTGTGTGGTGTCCCCGTCCTCATACCTATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649128.1 |
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| CDS TCA 90 bp | GTGTCCCGTGTTACTGACTGCATGTTGGTGCTAGTCTATTATCAGTaGAAGTGCCTAGGTTTTATTTTACAGAGATGGAGACAGCAGTAC | + |
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Preference number: 5 (lower is better) Translates to: VSRVTDCMLVLVYYQ*KCLGFILQRWRQQY Trigger: GTACTGCTGTCTCCATCTCTGTAAAATAAAACCTAGGCACTTTCACTGATAATAGACTAGCACCAACATGCAGTCAGTAACACGGGACAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000649128.1 |
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| CDS TCA 90 bp | AAGAGATACTCAGCAACTTCATTGTCCTTGATGCCCAAGCTCGGTTaGCTTTTGCAGCCTTACTTCAGTTATTTATGCAATTGGAGTAGC | + |
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Preference number: 5 (lower is better) Translates to: KRYSATSLSLMPKLG*LLQPYFSYLCNWSS Trigger: GCTACTCCAATTGCATAAATAACTGAAGTAAGGCTGCAAAAGTCAACCGAGCTTGGGCATCAAGGACAATGAAGTTGCTGAGTATCTCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649128.1 |
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| CDS CCA 72 bp | CCTCCGACAGTTCGGAGACGAGAGCAGGGACCAGTGTaGTTCTGGAATAGGTATGAGGACGGGGACACCACA | + |
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Preference number: 6 (lower is better) Translates to: PPTVRRREQGPV*FWNRYEDGDTT Trigger: TGTGGTGTCCCCGTCCTCATACCTATTCCAGAACCACACTGGTCCCTGCTCTCGTCTCCGAACTGTCGGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649128.1 |
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| CDS CCA 72 bp | ACAGTTCGGAGACGAGAGCAGGGACCAGTGTGGTTCTaGAATAGGTATGAGGACGGGGACACCACACAGCTC | + |
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Preference number: 6 (lower is better) Translates to: TVRRREQGPVWF*NRYEDGDTTQL Trigger: GAGCTGTGTGGTGTCCCCGTCCTCATACCTATTCCAGAACCACACTGGTCCCTGCTCTCGTCTCCGAACTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649128.1 |
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| CDS CCA 72 bp | GAGGACGGGGACACCACACAGCTCATGTCCAGAGGATaGAATCGCTTTGGCTCTATGCCATTATCAGGACAT | + |
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Preference number: 6 (lower is better) Translates to: EDGDTTQLMSRG*NRFGSMPLSGH Trigger: ATGTCCTGATAATGGCATAGAGCCAAAGCGATTCCATCCTCTGGACATGAGCTGTGTGGTGTCCCCGTCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649128.1 |
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| CDS CAA 90 bp | TGCCTGGGTAAAAATCTTAAGCAACAACACAGGGAGTTCAGGTCCTaGCAAAAGCAGGTCCATCCTCCGACAGTTCGGAGACGAGAGCAG | + |
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Preference number: 6 (lower is better) Translates to: CLGKNLKQQHREFRS*QKQVHPPTVRRREQ Trigger: CTGCTCTCGTCTCCGAACTGTCGGAGGATGGACCTGCTTTTGCAAGGACCTGAACTCCCTGTGTTGTTGCTTAAGATTTTTACCCAGGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000649128.1 |
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| CDS CAA 90 bp | AGGACGGGGACACCACACAGCTCATGTCCAGAGGATGGAATCGCTTaGGCTCTATGCCATTATCAGGACATTCTTCTGCTTCAAACTGGT | + |
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Preference number: 6 (lower is better) Translates to: RTGTPHSSCPEDGIA*ALCHYQDILLLQTG Trigger: ACCAGTTTGAAGCAGAAGAATGTCCTGATAATGGCATAGAGCCAAAGCGATTCCATCCTCTGGACATGAGCTGTGTGGTGTCCCCGTCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649128.1 |
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| CDS TCA 72 bp | AGGTGCCCTGAGTTTCTGTTCCCACAGACACAGCGATaGGTTGGCAGAATTCATTTCCTTTTCATGCCTGGG | + |
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Preference number: 6 (lower is better) Translates to: RCPEFLFPQTQR*VGRIHFLFMPG Trigger: CCCAGGCATGAAAAGGAAATGAATTCTGCCAACTCATCGCTGTGTCTGTGGGAACAGAAACTCAGGGCACCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649128.1 |
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| CDS GCA 72 bp | AAAATCTTAAGCAACAACACAGGGAGTTCAGGTCCTTaGAAAAGCAGGTCCATCCTCCGACAGTTCGGAGAC | + |
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Preference number: 6 (lower is better) Translates to: KILSNNTGSSGP*KSRSILRQFGD Trigger: GTCTCCGAACTGTCGGAGGATGGACCTGCTTTTGCAAGGACCTGAACTCCCTGTGTTGTTGCTTAAGATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000649128.1 |
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| CDS CCA 72 bp | CACCACACAGCTCATGTCCAGAGGATGGAATCGCTTTaGCTCTATGCCATTATCAGGACATTCTTCTGCTTC | + |
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Preference number: 6 (lower is better) Translates to: HHTAHVQRMESL*LYAIIRTFFCF Trigger: GAAGCAGAAGAATGTCCTGATAATGGCATAGAGCCAAAGCGATTCCATCCTCTGGACATGAGCTGTGTGGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649128.1 |
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| CDS CAA 72 bp | ACACCACACAGCTCATGTCCAGAGGATGGAATCGCTTaGGCTCTATGCCATTATCAGGACATTCTTCTGCTT | + |
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Preference number: 6 (lower is better) Translates to: TPHSSCPEDGIA*ALCHYQDILLL Trigger: AAGCAGAAGAATGTCCTGATAATGGCATAGAGCCAAAGCGATTCCATCCTCTGGACATGAGCTGTGTGGTGT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649128.1 |
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| CDS CAA 72 bp | AAAAATCTTAAGCAACAACACAGGGAGTTCAGGTCCTaGCAAAAGCAGGTCCATCCTCCGACAGTTCGGAGA | + |
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Preference number: 6 (lower is better) Translates to: KNLKQQHREFRS*QKQVHPPTVRR Trigger: TCTCCGAACTGTCGGAGGATGGACCTGCTTTTGCAAGGACCTGAACTCCCTGTGTTGTTGCTTAAGATTTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000649128.1 |
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| CDS CAA 72 bp | GCCCTGAGTTTCTGTTCCCACAGACACAGCGATGAGTaGGCAGAATTCATTTCCTTTTCATGCCTGGGTAAA | + |
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Preference number: 6 (lower is better) Translates to: ALSFCSHRHSDE*AEFISFSCLGK Trigger: TTTACCCAGGCATGAAAAGGAAATGAATTCTGCCAACTCATCGCTGTGTCTGTGGGAACAGAAACTCAGGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649128.1 |
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| CDS CAA 90 bp | AGAATAGGTGCCCTGAGTTTCTGTTCCCACAGACACAGCGATGAGTaGGCAGAATTCATTTCCTTTTCATGCCTGGGTAAAAATCTTAAG | + |
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Preference number: 6 (lower is better) Translates to: RIGALSFCSHRHSDE*AEFISFSCLGKNLK Trigger: CTTAAGATTTTTACCCAGGCATGAAAAGGAAATGAATTCTGCCAACTCATCGCTGTGTCTGTGGGAACAGAAACTCAGGGCACCTATTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000649128.1 |
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| CDS TCA 72 bp | TCAGCAACTTCATTGTCCTTGATGCCCAAGCTCGGTTaGCTTTTGCAGCCTTACTTCAGTTATTTATGCAAT | + |
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Preference number: 6 (lower is better) Translates to: SATSLSLMPKLG*LLQPYFSYLCN Trigger: ATTGCATAAATAACTGAAGTAAGGCTGCAAAAGTCAACCGAGCTTGGGCATCAAGGACAATGAAGTTGCTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649128.1 |
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| CDS TCA 72 bp | GTTACTGACTGCATGTTGGTGCTAGTCTATTATCAGTaGAAGTGCCTAGGTTTTATTTTACAGAGATGGAGA | + |
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Preference number: 6 (lower is better) Translates to: VTDCMLVLVYYQ*KCLGFILQRWR Trigger: TCTCCATCTCTGTAAAATAAAACCTAGGCACTTTCACTGATAATAGACTAGCACCAACATGCAGTCAGTAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000649128.1 |
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