Pregenerated sensors for LINC02854 (Homo sapiens)
Ensembl gene IDs: ENSG00000238131Ensembl transcript IDs: ENST00000418679.2, ENST00000668442.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GTCATAGTGGGAGAGTTGACGATGGTGGCAGAGGCTGGACTGACGTaGGGAGGTGGCCACGAGCCAAGGTGTGTGGGCAGCCAGCCACTG | + |
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Preference number: 5 (lower is better) Translates to: VIVGELTMVAEAGLT*GGGHEPRCVGSQPL Trigger: CAGTGGCTGGCTGCCCACACACCTTGGCTCGTGGCCACCTCCTCACGTCAGTCCAGCCTCTGCCACCATCGTCAACTCTCCCACTATGAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000418679.2 ENST00000668442.1 |
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| CDS TCA 90 bp | TGGCACTGCCATGCAGAGGGAGATAATCACATTGACGGGCAGCAGTaGTTAACCTTGAGCTGGGTTTGTGGTCTGGCTGTGTCTGCTCCA | + |
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Preference number: 5 (lower is better) Translates to: WHCHAEGDNHIDGQQ*LTLSWVCGLAVSAP Trigger: TGGAGCAGACACAGCCAGACCACAAACCCAGCTCAAGGTTAATCACTGCTGCCCGTCAATGTGATTATCTCCCTCTGCATGGCAGTGCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000418679.2 ENST00000668442.1 |
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| CDS TCA 90 bp | CCAGGCAGCCATGAATTAACAGCATCCAGTGTTTACTGTTGTGTATaGCAGCACATACTCTGGTCCCACAGTGGGAAAATGGCACTGCCA | + |
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Preference number: 5 (lower is better) Translates to: PGSHELTASSVYCCV*QHILWSHSGKMALP Trigger: TGGCAGTGCCATTTTCCCACTGTGGGACCAGAGTATGTGCTGTCATACACAACAGTAAACACTGGATGCTGTTAATTCATGGCTGCCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000418679.2 |
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| CDS TCA 90 bp | TGTGTGTGTGTGTGTGTGTGTGTGTGCGAGCACGCCAGGCAGCCATaGATTAACAGCATCCAGTGTTTACTGTTGTGTATGACAGCACAT | + |
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Preference number: 5 (lower is better) Translates to: CVCVCVCVCEHARQP*INSIQCLLLCMTAH Trigger: ATGTGCTGTCATACACAACAGTAAACACTGGATGCTGTTAATTCATGGCTGCCTGGCGTGCTCGCACACACACACACACACACACACACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000418679.2 |
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| CDS CCA 72 bp | GACGATGGTGGCAGAGGCTGGACTGACGTGAGGAGGTaGCCACGAGCCAAGGTGTGTGGGCAGCCAGCCACT | + |
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Preference number: 6 (lower is better) Translates to: DDGGRGWTDVRR*PRAKVCGQPAT Trigger: AGTGGCTGGCTGCCCACACACCTTGGCTCGTGGCCACCTCCTCACGTCAGTCCAGCCTCTGCCACCATCGTC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000418679.2 ENST00000668442.1 |
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| CDS TCA 72 bp | GGAGAGTTGACGATGGTGGCAGAGGCTGGACTGACGTaGGGAGGTGGCCACGAGCCAAGGTGTGTGGGCAGC | + |
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Preference number: 6 (lower is better) Translates to: GELTMVAEAGLT*GGGHEPRCVGS Trigger: GCTGCCCACACACCTTGGCTCGTGGCCACCTCCTCACGTCAGTCCAGCCTCTGCCACCATCGTCAACTCTCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000418679.2 ENST00000668442.1 |
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| CDS CCA 72 bp | GTGGCCACGAGCCAAGGTGTGTGGGCAGCCAGCCACTaGAAGCTGGAGAAGGTAAATCTCTCCCGTAGAGCC | + |
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Preference number: 6 (lower is better) Translates to: VATSQGVWAASH*KLEKVNLSRRA Trigger: GGCTCTACGGGAGAGATTTACCTTCTCCAGCTTCCAGTGGCTGGCTGCCCACACACCTTGGCTCGTGGCCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000418679.2 ENST00000668442.1 |
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| CDS GCA 72 bp | AGCACATACTCTGGTCCCACAGTGGGAAAATGGCACTaGCATGCAGAGGGAGATAATCACATTGACGGGCAG | + |
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Preference number: 6 (lower is better) Translates to: STYSGPTVGKWH*HAEGDNHIDGQ Trigger: CTGCCCGTCAATGTGATTATCTCCCTCTGCATGGCAGTGCCATTTTCCCACTGTGGGACCAGAGTATGTGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000418679.2 ENST00000668442.1 |
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| CDS TCA 72 bp | CATGCAGAGGGAGATAATCACATTGACGGGCAGCAGTaGTTAACCTTGAGCTGGGTTTGTGGTCTGGCTGTG | + |
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Preference number: 6 (lower is better) Translates to: HAEGDNHIDGQQ*LTLSWVCGLAV Trigger: CACAGCCAGACCACAAACCCAGCTCAAGGTTAATCACTGCTGCCCGTCAATGTGATTATCTCCCTCTGCATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000418679.2 ENST00000668442.1 |
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| CDS TCA 72 bp | GTGTGTGTGTGTGTGTGCGAGCACGCCAGGCAGCCATaGATTAACAGCATCCAGTGTTTACTGTTGTGTATG | + |
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Preference number: 6 (lower is better) Translates to: VCVCVCEHARQP*INSIQCLLLCM Trigger: CATACACAACAGTAAACACTGGATGCTGTTAATTCATGGCTGCCTGGCGTGCTCGCACACACACACACACAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000418679.2 |
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| CDS CCA 72 bp | CTGTTGTGTATGACAGCACATACTCTGGTCCCACAGTaGGAAAATGGCACTGCCATGCAGAGGGAGATAATC | + |
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Preference number: 6 (lower is better) Translates to: LLCMTAHTLVPQ*ENGTAMQREII Trigger: GATTATCTCCCTCTGCATGGCAGTGCCATTTTCCCACTGTGGGACCAGAGTATGTGCTGTCATACACAACAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000418679.2 ENST00000668442.1 |
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| CDS TCA 72 bp | AGTGTTTGGTGGCAAAAATCATTAGCGCCTGAACTGTaGAGAGTCTCGATGTATGAGACCGAAGAACAGATA | + |
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Preference number: 6 (lower is better) Translates to: SVWWQKSLAPEL*RVSMYETEEQI Trigger: TATCTGTTCTTCGGTCTCATACATCGAGACTCTTCACAGTTCAGGCGCTAATGATTTTTGCCACCAAACACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000418679.2 |
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| CDS TCA 72 bp | CATGAATTAACAGCATCCAGTGTTTACTGTTGTGTATaGCAGCACATACTCTGGTCCCACAGTGGGAAAATG | + |
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Preference number: 6 (lower is better) Translates to: HELTASSVYCCV*QHILWSHSGKM Trigger: CATTTTCCCACTGTGGGACCAGAGTATGTGCTGTCATACACAACAGTAAACACTGGATGCTGTTAATTCATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000418679.2 |
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