Pregenerated sensors for LINC02853 (Homo sapiens)
Ensembl gene IDs: ENSG00000259245Ensembl transcript IDs: ENST00000560056.1, ENST00000668741.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | ATGGCAGCCCGTCAAACTTCACAGGGTAGCTGTCAGAATTTTGACTaGTGTACAAGAGCTCCTTGCTCATGTTTGCCCTTCCTTTCAGTG | + |
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Preference number: 5 (lower is better) Translates to: MAARQTSQGSCQNFD*CTRAPCSCLPFLSV Trigger: CACTGAAAGGAAGGGCAAACATGAGCAAGGAGCTCTTGTACATCAGTCAAAATTCTGACAGCTACCCTGTGAAGTTTGACGGGCTGCCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000560056.1 ENST00000668741.1 |
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| CDS TCA 90 bp | CTGACAATAAAATTTCACTCCCTGAAATTTCCAAGGTTTCTGCTGTaGGCACATCCCCACTTAAGATCTTCCTCTGGGATTAGACAACTC | + |
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Preference number: 5 (lower is better) Translates to: LTIKFHSLKFPRFLL*AHPHLRSSSGIRQL Trigger: GAGTTGTCTAATCCCAGAGGAAGATCTTAAGTGGGGATGTGCTCACAGCAGAAACCTTGGAAATTTCAGGGAGTGAAATTTTATTGTCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000560056.1 ENST00000668741.1 |
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| CDS CCA 72 bp | CTGGTGTTTGCCAGCCATCTGGGTGGCAGCAGGCCCTaGAGTGAGCAACGCACCCTTAAGATCTACTACCCT | + |
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Preference number: 6 (lower is better) Translates to: LVFASHLGGSRP*SEQRTLKIYYP Trigger: AGGGTAGTAGATCTTAAGGGTGCGTTGCTCACTCCAGGGCCTGCTGCCACCCAGATGGCTGGCAAACACCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000560056.1 |
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| CDS CAA 90 bp | AGCACATGGCAGCCCGTCAAACTTCACAGGGTAGCTGTCAGAATTTaGACTGATGTACAAGAGCTCCTTGCTCATGTTTGCCCTTCCTTT | + |
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Preference number: 6 (lower is better) Translates to: STWQPVKLHRVAVRI*TDVQELLAHVCPSF Trigger: AAAGGAAGGGCAAACATGAGCAAGGAGCTCTTGTACATCAGTCAAAATTCTGACAGCTACCCTGTGAAGTTTGACGGGCTGCCATGTGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000560056.1 ENST00000668741.1 |
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| CDS CAA 72 bp | CAGCCCGTCAAACTTCACAGGGTAGCTGTCAGAATTTaGACTGATGTACAAGAGCTCCTTGCTCATGTTTGC | + |
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Preference number: 6 (lower is better) Translates to: QPVKLHRVAVRI*TDVQELLAHVC Trigger: GCAAACATGAGCAAGGAGCTCTTGTACATCAGTCAAAATTCTGACAGCTACCCTGTGAAGTTTGACGGGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000560056.1 ENST00000668741.1 |
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| CDS CAA 90 bp | CAAAAGAGGCAATTAAAAGCTTCCACGGGCATAAGGGCCACATTCTaGGGTCTCATCAAGTCATCTGTAAACATTCAGTCAGCTGGATCC | + |
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Preference number: 6 (lower is better) Translates to: QKRQLKASTGIRATF*GLIKSSVNIQSAGS Trigger: GGATCCAGCTGACTGAATGTTTACAGATGACTTGATGAGACCCAAGAATGTGGCCCTTATGCCCGTGGAAGCTTTTAATTGCCTCTTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000668741.1 |
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| CDS TCA 72 bp | CGTCAAACTTCACAGGGTAGCTGTCAGAATTTTGACTaGTGTACAAGAGCTCCTTGCTCATGTTTGCCCTTC | + |
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Preference number: 6 (lower is better) Translates to: RQTSQGSCQNFD*CTRAPCSCLPF Trigger: GAAGGGCAAACATGAGCAAGGAGCTCTTGTACATCAGTCAAAATTCTGACAGCTACCCTGTGAAGTTTGACG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000560056.1 ENST00000668741.1 |
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| CDS GCA 72 bp | GCTCCTTGCTCATGTTTGCCCTTCCTTTCAGTGGAGTaGACACAGGTAAGACAGCTTGTTGGTAATTTTTAT | + |
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Preference number: 6 (lower is better) Translates to: APCSCLPFLSVE*TQVRQLVGNFY Trigger: ATAAAAATTACCAACAAGCTGTCTTACCTGTGTGCACTCCACTGAAAGGAAGGGCAAACATGAGCAAGGAGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000560056.1 ENST00000668741.1 |
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| CDS TCA 72 bp | AAATTTCACTCCCTGAAATTTCCAAGGTTTCTGCTGTaGGCACATCCCCACTTAAGATCTTCCTCTGGGATT | + |
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Preference number: 6 (lower is better) Translates to: KFHSLKFPRFLL*AHPHLRSSSGI Trigger: AATCCCAGAGGAAGATCTTAAGTGGGGATGTGCTCACAGCAGAAACCTTGGAAATTTCAGGGAGTGAAATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000560056.1 ENST00000668741.1 |
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| CDS CAA 72 bp | CAATTAAAAGCTTCCACGGGCATAAGGGCCACATTCTaGGGTCTCATCAAGTCATCTGTAAACATTCAGTCA | + |
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Preference number: 6 (lower is better) Translates to: QLKASTGIRATF*GLIKSSVNIQS Trigger: TGACTGAATGTTTACAGATGACTTGATGAGACCCAAGAATGTGGCCCTTATGCCCGTGGAAGCTTTTAATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668741.1 |
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