Pregenerated sensors for LINC02848 (Homo sapiens)
Ensembl gene IDs: ENSG00000226581Ensembl transcript IDs: ENST00000450544.1, ENST00000655394.1, ENST00000656125.1, ENST00000656711.1, ENST00000660806.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GCCCTTAAAAGGGACAGGAATTGCTCACTCGGGGAGCTCGGCTCTTaGGACAGGAGTCTTGCCGATGCTCCCAGCCAAATAAACCACTTC | + |
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Preference number: 5 (lower is better) Translates to: ALKRDRNCSLGELGS*DRSLADAPSQINHF Trigger: GAAGTGGTTTATTTGGCTGGGAGCATCGGCAAGACTCCTGTCTCAAGAGCCGAGCTCCCCGAGTGAGCAATTCCTGTCCCTTTTAAGGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000656125.1 |
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| CDS GCA 90 bp | TTGCTCACTCGGGGAGCTCGGCTCTTGAGACAGGAGTCTTGCCGATaGTCCCAGCCAAATAAACCACTTCCTTCTTTAACTTGGTGTCTG | + |
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Preference number: 5 (lower is better) Translates to: LLTRGARLLRQESCR*SQPNKPLPSLTWCL Trigger: CAGACACCAAGTTAAAGAAGGAAGTGGTTTATTTGGCTGGGAGCATCGGCAAGACTCCTGTCTCAAGAGCCGAGCTCCCCGAGTGAGCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000656125.1 |
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| CDS CCA 90 bp | TCTTGCCGATGCTCCCAGCCAAATAAACCACTTCCTTCTTTAACTTaGTGTCTGAGGGGTTTTGTCTGTGGCTTGTCCTGCTACACTAGG | + |
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Preference number: 5 (lower is better) Translates to: SCRCSQPNKPLPSLT*CLRGFVCGLSCYTR Trigger: CCTAGTGTAGCAGGACAAGCCACAGACAAAACCCCTCAGACACCAAGTTAAAGAAGGAAGTGGTTTATTTGGCTGGGAGCATCGGCAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000656125.1 |
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| CDS TCA 90 bp | AAACAACTAAACCTAACAAACATATGCACAGCACTGCATCCAACATaGGAATATATATTCTTCTCAAATCCACATGGAACGTTCTCTAGG | + |
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Preference number: 5 (lower is better) Translates to: KQLNLTNICTALHPT*EYIFFSNPHGTFSR Trigger: CCTAGAGAACGTTCCATGTGGATTTGAGAAGAATATATATTCTCATGTTGGATGCAGTGCTGTGCATATGTTTGTTAGGTTTAGTTGTTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000450544.1 ENST00000660806.1 |
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| CDS TCA 72 bp | AGGGACAGGAATTGCTCACTCGGGGAGCTCGGCTCTTaGGACAGGAGTCTTGCCGATGCTCCCAGCCAAATA | + |
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Preference number: 6 (lower is better) Translates to: RDRNCSLGELGS*DRSLADAPSQI Trigger: TATTTGGCTGGGAGCATCGGCAAGACTCCTGTCTCAAGAGCCGAGCTCCCCGAGTGAGCAATTCCTGTCCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000656125.1 |
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| CDS CAA 72 bp | AAGGGACAGGAATTGCTCACTCGGGGAGCTCGGCTCTaGAGACAGGAGTCTTGCCGATGCTCCCAGCCAAAT | + |
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Preference number: 6 (lower is better) Translates to: KGQELLTRGARL*RQESCRCSQPN Trigger: ATTTGGCTGGGAGCATCGGCAAGACTCCTGTCTCAAGAGCCGAGCTCCCCGAGTGAGCAATTCCTGTCCCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000656125.1 |
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| CDS GCA 72 bp | CTCACTCGGGGAGCTCGGCTCTTGAGACAGGAGTCTTaGCGATGCTCCCAGCCAAATAAACCACTTCCTTCT | + |
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Preference number: 6 (lower is better) Translates to: LTRGARLLRQES*RCSQPNKPLPS Trigger: AGAAGGAAGTGGTTTATTTGGCTGGGAGCATCGGCAAGACTCCTGTCTCAAGAGCCGAGCTCCCCGAGTGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000656125.1 |
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| CDS CCA 72 bp | TGCTCCCAGCCAAATAAACCACTTCCTTCTTTAACTTaGTGTCTGAGGGGTTTTGTCTGTGGCTTGTCCTGC | + |
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Preference number: 6 (lower is better) Translates to: CSQPNKPLPSLT*CLRGFVCGLSC Trigger: GCAGGACAAGCCACAGACAAAACCCCTCAGACACCAAGTTAAAGAAGGAAGTGGTTTATTTGGCTGGGAGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000656125.1 |
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| CDS CAA 72 bp | TCTTTAACTTGGTGTCTGAGGGGTTTTGTCTGTGGCTaGTCCTGCTACACTAGGAATCATAAAGATGTGGGG | + |
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Preference number: 6 (lower is better) Translates to: SLTWCLRGFVCG*SCYTRNHKDVG Trigger: CCCCACATCTTTATGATTCCTAGTGTAGCAGGACAAGCCACAGACAAAACCCCTCAGACACCAAGTTAAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000656125.1 |
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| CDS TCA 72 bp | ATACAGTTCCCTGTAGATACAACGCATCCCAAAGACTaGTCTCTCAGGATGTCCATAGTAATACATACAATT | + |
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Preference number: 6 (lower is better) Translates to: IQFPVDTTHPKD*SLRMSIVIHTI Trigger: AATTGTATGTATTACTATGGACATCCTGAGAGATCAGTCTTTGGGATGCGTTGTATCTACAGGGAACTGTAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655394.1 |
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| CDS TCA 72 bp | AACCTAACAAACATATGCACAGCACTGCATCCAACATaGGAATATATATTCTTCTCAAATCCACATGGAACG | + |
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Preference number: 6 (lower is better) Translates to: NLTNICTALHPT*EYIFFSNPHGT Trigger: CGTTCCATGTGGATTTGAGAAGAATATATATTCTCATGTTGGATGCAGTGCTGTGCATATGTTTGTTAGGTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000450544.1 ENST00000660806.1 |
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| CDS CAA 72 bp | GACCTAATCGGTTATGTTATCTATAGATCACAGACATaGTCATTGTATAGAAAGCACTGTGAAAATCCCTGT | + |
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Preference number: 6 (lower is better) Translates to: DLIGYVIYRSQT*SLYRKHCENPC Trigger: ACAGGGATTTTCACAGTGCTTTCTATACAATGACAATGTCTGTGATCTATAGATAACATAACCGATTAGGTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000656125.1 |
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| CDS CCA 72 bp | TGGTTATATATCTGGAAGTGGATTTGCTGGATAATGTaGTATTGTAAGTTTTTAGAAAGCTCCACAATGCTT | + |
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Preference number: 6 (lower is better) Translates to: WLYIWKWICWIM*YCKFLESSTML Trigger: AAGCATTGTGGAGCTTTCTAAAAACTTACAATACCACATTATCCAGCAAATCCACTTCCAGATATATAACCA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000656711.1 |
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