Pregenerated sensors for LINC02845 (Homo sapiens)
Ensembl gene IDs: ENSG00000253644Ensembl transcript IDs: ENST00000518612.2, ENST00000669605.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TTTCAGCCAGGCTTCTGGGGAGTTCTTGAGGCAGCATCTCCTGGTTaGGGAGACCCAGGTCCTGCAGGAACGCCACCATGTTCAATCATT | + |
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Preference number: 5 (lower is better) Translates to: FQPGFWGVLEAASPG*GDPGPAGTPPCSII Trigger: AATGATTGAACATGGTGGCGTTCCTGCAGGACCTGGGTCTCCTCAACCAGGAGATGCTGCCTCAAGAACTCCCCAGAAGCCTGGCTGAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000518612.2 ENST00000669605.1 |
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| CDS CCA 90 bp | GGAGACCCAGGTCCTGCAGGAACGCCACCATGTTCAATCATTGGCTaGGAAGAGAACATGAGAAATCTGGCCTTGGTACAACGTGCAGAG | + |
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Preference number: 5 (lower is better) Translates to: GDPGPAGTPPCSIIG*EENMRNLALVQRAE Trigger: CTCTGCACGTTGTACCAAGGCCAGATTTCTCATGTTCTCTTCCCAGCCAATGATTGAACATGGTGGCGTTCCTGCAGGACCTGGGTCTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669605.1 |
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| CDS CCA 90 bp | TTGAGGAGACCCAGGTCCTGCAGGAACGCCACCATGTTCAATCATTaGCTGGGAAGAGAACATGAGAAATCTGGCCTTGGTACAACGTGC | + |
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Preference number: 5 (lower is better) Translates to: LRRPRSCRNATMFNH*LGREHEKSGLGTTC Trigger: GCACGTTGTACCAAGGCCAGATTTCTCATGTTCTCTTCCCAGCCAATGATTGAACATGGTGGCGTTCCTGCAGGACCTGGGTCTCCTCAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669605.1 |
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| CDS TCA 90 bp | TGCAGGAACGCCACCATGTTCAATCATTGGCTCTTACGTGGAACATaGGGCAGTATGGTGGCAGTGAGTTCCACATGTCGAGAAGCCTTG | + |
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Preference number: 5 (lower is better) Translates to: CRNATMFNHWLLRGT*GSMVAVSSTCREAL Trigger: CAAGGCTTCTCGACATGTGGAACTCACTGCCACCATACTGCCTCATGTTCCACGTAAGAGCCAATGATTGAACATGGTGGCGTTCCTGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000518612.2 |
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| CDS TCA 90 bp | GAGAAGAAGGAAGAAGCCAACAACGCTGGGAAAACCATCAGACCATaGTGTAGGTCTGACCCCTGTGAAGGAGGATTAAGTAGGAAGAGT | + |
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Preference number: 5 (lower is better) Translates to: EKKEEANNAGKTIRP*CRSDPCEGGLSRKS Trigger: ACTCTTCCTACTTAATCCTCCTTCACAGGGGTCAGACCTACATCATGGTCTGATGGTTTTCCCAGCGTTGTTGGCTTCTTCCTTCTTCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000518612.2 ENST00000669605.1 |
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| CDS TCA 90 bp | GCTCCTCTTAATGTTCATCACAGTTTCATGCTCTTACGTGGAACATaGGGCAGTATGGTGGCAGTGAGTTCCACATGTCGAGAAGCCTTG | + |
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Preference number: 5 (lower is better) Translates to: APLNVHHSFMLLRGT*GSMVAVSSTCREAL Trigger: CAAGGCTTCTCGACATGTGGAACTCACTGCCACCATACTGCCTCATGTTCCACGTAAGAGCATGAAACTGTGATGAACATTAAGAGGAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669605.1 |
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| CDS TCA 72 bp | GGCTTCTGGGGAGTTCTTGAGGCAGCATCTCCTGGTTaGGGAGACCCAGGTCCTGCAGGAACGCCACCATGT | + |
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Preference number: 6 (lower is better) Translates to: GFWGVLEAASPG*GDPGPAGTPPC Trigger: ACATGGTGGCGTTCCTGCAGGACCTGGGTCTCCTCAACCAGGAGATGCTGCCTCAAGAACTCCCCAGAAGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000518612.2 ENST00000669605.1 |
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| CDS CAA 72 bp | ACCCAGGTCCTGCAGGAACGCCACCATGTTCAATCATaGGCTCTTACGTGGAACATGAGGCAGTATGGTGGC | + |
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Preference number: 6 (lower is better) Translates to: TQVLQERHHVQS*ALTWNMRQYGG Trigger: GCCACCATACTGCCTCATGTTCCACGTAAGAGCCAATGATTGAACATGGTGGCGTTCCTGCAGGACCTGGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000518612.2 |
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| CDS CAA 90 bp | GCCAAGTCAGTTCACTCAGCATTAATGTCCTCATCTATCAAGCAGTaGGATGAGACCAGGGGCCAGCAACCTTTTACTGGAAACGGCCAG | + |
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Preference number: 6 (lower is better) Translates to: AKSVHSALMSSSIKQ*DETRGQQPFTGNGQ Trigger: CTGGCCGTTTCCAGTAAAAGGTTGCTGGCCCCTGGTCTCATCCAACTGCTTGATAGATGAGGACATTAATGCTGAGTGAACTGACTTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000518612.2 ENST00000669605.1 |
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| CDS CAA 72 bp | AGTATGGTGGCAGTGAGTTCCACATGTCGAGAAGCCTaGTCTTTAAGAACCAGGACCTTGGCCAAGTCAGTT | + |
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Preference number: 6 (lower is better) Translates to: SMVAVSSTCREA*SLRTRTLAKSV Trigger: AACTGACTTGGCCAAGGTCCTGGTTCTTAAAGACAAGGCTTCTCGACATGTGGAACTCACTGCCACCATACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000518612.2 ENST00000669605.1 |
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| CDS CAA 72 bp | GTTCACTCAGCATTAATGTCCTCATCTATCAAGCAGTaGGATGAGACCAGGGGCCAGCAACCTTTTACTGGA | + |
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Preference number: 6 (lower is better) Translates to: VHSALMSSSIKQ*DETRGQQPFTG Trigger: TCCAGTAAAAGGTTGCTGGCCCCTGGTCTCATCCAACTGCTTGATAGATGAGGACATTAATGCTGAGTGAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000518612.2 ENST00000669605.1 |
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| CDS CAA 72 bp | ACATGTCGAGAAGCCTTGTCTTTAAGAACCAGGACCTaGGCCAAGTCAGTTCACTCAGCATTAATGTCCTCA | + |
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Preference number: 6 (lower is better) Translates to: TCREALSLRTRT*AKSVHSALMSS Trigger: TGAGGACATTAATGCTGAGTGAACTGACTTGGCCAAGGTCCTGGTTCTTAAAGACAAGGCTTCTCGACATGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000518612.2 ENST00000669605.1 |
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