Pregenerated sensors for LINC02844 (Homo sapiens)
Ensembl gene IDs: ENSG00000253679Ensembl transcript IDs: ENST00000523121.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AGTGGTCAGGGATGGGCCAGTCTGTCCAAAGGGGACAGCAGGTTTTaGAGACAAGGTGGCACATATGTAGAGAGCTCTTCTGCCCTGGCT | + |
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Preference number: 5 (lower is better) Translates to: SGQGWASLSKGDSRF*RQGGTYVESSSALA Trigger: AGCCAGGGCAGAAGAGCTCTCTACATATGTGCCACCTTGTCTCCAAAACCTGCTGTCCCCTTTGGACAGACTGGCCCATCCCTGACCACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000523121.1 |
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| CDS CCA 90 bp | ATGGGCCAGTCTGTCCAAAGGGGACAGCAGGTTTTGGAGACAAGGTaGCACATATGTAGAGAGCTCTTCTGCCCTGGCTGCTTGTCATGG | + |
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Preference number: 5 (lower is better) Translates to: MGQSVQRGQQVLETR*HICRELFCPGCLSW Trigger: CCATGACAAGCAGCCAGGGCAGAAGAGCTCTCTACATATGTGCCACCTTGTCTCCAAAACCTGCTGTCCCCTTTGGACAGACTGGCCCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000523121.1 |
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| CDS GCA 90 bp | AGTTTGCCTCACTTAGGCTTATCACCGCTATATGCAAGTAACTTGTaGCTCTCCCTGCAGCCCCCTCAGCATTTCAGTCTTGCTCTCATT | + |
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Preference number: 5 (lower is better) Translates to: SLPHLGLSPLYASNL*LSLQPPQHFSLALI Trigger: AATGAGAGCAAGACTGAAATGCTGAGGGGGCTGCAGGGAGAGGCACAAGTTACTTGCATATAGCGGTGATAAGCCTAAGTGAGGCAAACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000523121.1 |
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| CDS TCA 90 bp | CTCAGCATTTCAGTCTTGCTCTCATTTATGTCCAGCCCATGTACTTaGCTGTGGACTTTTTCTTCCCACCTCTGTGCCTCATCCCAACCT | + |
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Preference number: 5 (lower is better) Translates to: LSISVLLSFMSSPCT*LWTFSSHLCASSQP Trigger: AGGTTGGGATGAGGCACAGAGGTGGGAAGAAAAAGTCCACAGTCAAGTACATGGGCTGGACATAAATGAGAGCAAGACTGAAATGCTGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000523121.1 |
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| CDS CAA 90 bp | CAGTGGTCAGGGATGGGCCAGTCTGTCCAAAGGGGACAGCAGGTTTaGGAGACAAGGTGGCACATATGTAGAGAGCTCTTCTGCCCTGGC | + |
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Preference number: 6 (lower is better) Translates to: QWSGMGQSVQRGQQV*ETRWHICRELFCPG Trigger: GCCAGGGCAGAAGAGCTCTCTACATATGTGCCACCTTGTCTCCAAAACCTGCTGTCCCCTTTGGACAGACTGGCCCATCCCTGACCACTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000523121.1 |
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| CDS CCA 72 bp | TCTGTCCAAAGGGGACAGCAGGTTTTGGAGACAAGGTaGCACATATGTAGAGAGCTCTTCTGCCCTGGCTGC | + |
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Preference number: 6 (lower is better) Translates to: SVQRGQQVLETR*HICRELFCPGC Trigger: GCAGCCAGGGCAGAAGAGCTCTCTACATATGTGCCACCTTGTCTCCAAAACCTGCTGTCCCCTTTGGACAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000523121.1 |
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| CDS CCA 72 bp | TTGTTGCCATCAGGAATTGAAGACAGGGGAGAACAGTaGTCAGGGATGGGCCAGTCTGTCCAAAGGGGACAG | + |
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Preference number: 6 (lower is better) Translates to: LLPSGIEDRGEQ*SGMGQSVQRGQ Trigger: CTGTCCCCTTTGGACAGACTGGCCCATCCCTGACCACTGTTCTCCCCTGTCTTCAATTCCTGATGGCAACAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000523121.1 |
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| CDS CCA 72 bp | GGATGGGCCAGTCTGTCCAAAGGGGACAGCAGGTTTTaGAGACAAGGTGGCACATATGTAGAGAGCTCTTCT | + |
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Preference number: 6 (lower is better) Translates to: GWASLSKGDSRF*RQGGTYVESSS Trigger: AGAAGAGCTCTCTACATATGTGCCACCTTGTCTCCAAAACCTGCTGTCCCCTTTGGACAGACTGGCCCATCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000523121.1 |
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| CDS CAA 90 bp | TTCAGTTTGCCTCACTTAGGCTTATCACCGCTATATGCAAGTAACTaGTGCCTCTCCCTGCAGCCCCCTCAGCATTTCAGTCTTGCTCTC | + |
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Preference number: 6 (lower is better) Translates to: FSLPHLGLSPLYASN*CLSLQPPQHFSLAL Trigger: GAGAGCAAGACTGAAATGCTGAGGGGGCTGCAGGGAGAGGCACAAGTTACTTGCATATAGCGGTGATAAGCCTAAGTGAGGCAAACTGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000523121.1 |
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| CDS CAA 72 bp | AAACAGTCAGAGAATCTCTCTTGTTGCCATCAGGAATaGAAGACAGGGGAGAACAGTGGTCAGGGATGGGCC | + |
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Preference number: 6 (lower is better) Translates to: KQSENLSCCHQE*KTGENSGQGWA Trigger: GGCCCATCCCTGACCACTGTTCTCCCCTGTCTTCAATTCCTGATGGCAACAAGAGAGATTCTCTGACTGTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000523121.1 |
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| CDS CAA 90 bp | CCTCAGCATTTCAGTCTTGCTCTCATTTATGTCCAGCCCATGTACTaGACTGTGGACTTTTTCTTCCCACCTCTGTGCCTCATCCCAACC | + |
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Preference number: 6 (lower is better) Translates to: PQHFSLALIYVQPMY*TVDFFFPPLCLIPT Trigger: GGTTGGGATGAGGCACAGAGGTGGGAAGAAAAAGTCCACAGTCAAGTACATGGGCTGGACATAAATGAGAGCAAGACTGAAATGCTGAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000523121.1 |
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| CDS GCA 72 bp | TATCACCGCTATATGCAAGTAACTTGTGCCTCTCCCTaGAGCCCCCTCAGCATTTCAGTCTTGCTCTCATTT | + |
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Preference number: 6 (lower is better) Translates to: YHRYMQVTCASP*SPLSISVLLSF Trigger: AAATGAGAGCAAGACTGAAATGCTGAGGGGGCTGCAGGGAGAGGCACAAGTTACTTGCATATAGCGGTGATA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000523121.1 |
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| CDS CAA 90 bp | TCCCACCTCTGTGCCTCATCCCAACCTCAGATAGGATATATAATTTaGTTCAGGACTATTTCACTTCCCCGTGGCACCGAAGAAAATGAC | + |
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Preference number: 6 (lower is better) Translates to: SHLCASSQPQIGYII*FRTISLPRGTEEND Trigger: GTCATTTTCTTCGGTGCCACGGGGAAGTGAAATAGTCCTGAACAAAATTATATATCCTATCTGAGGTTGGGATGAGGCACAGAGGTGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000523121.1 |
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