Pregenerated sensors for LINC02842 (Homo sapiens)
Ensembl gene IDs: ENSG00000254119Ensembl transcript IDs: ENST00000517953.5, ENST00000518593.5, ENST00000519452.5, ENST00000519766.1, ENST00000519967.5, ENST00000519990.1, ENST00000520097.5, ENST00000520862.5, ENST00000521501.1, ENST00000523042.5, ENST00000523728.1
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | ACACCCTGCGCCCGGTGGGTCCCAAGCCTGGTCACTCAATGCTCCTaGGGGTTGCTAGATGCCCCACTGCAGGTCCCACTTCTGATACCA | + |
|
Preference number: 5 (lower is better) Translates to: TPCARWVPSLVTQCS*GLLDAPLQVPLLIP Trigger: TGGTATCAGAAGTGGGACCTGCAGTGGGGCATCTAGCAACCCCCAGGAGCATTGAGTGACCAGGCTTGGGACCCACCGGGCGCAGGGTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000518593.5 ENST00000519452.5 ENST00000519967.5 ENST00000520862.5 ENST00000523042.5 |
||
| CDS CCA 90 bp | CATCTTGCAGTTCCTGTGGATTTAAAGTCCAGACATGGCCTTAGCTaGGTCTTCTGTAAGCTGCAATCCAGGTGCCAGCCAGGATTGAAT | + |
|
Preference number: 5 (lower is better) Translates to: HLAVPVDLKSRHGLS*VFCKLQSRCQPGLN Trigger: ATTCAATCCTGGCTGGCACCTGGATTGCAGCTTACAGAAGACCCAGCTAAGGCCATGTCTGGACTTTAAATCCACAGGAACTGCAAGATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000518593.5 ENST00000519452.5 ENST00000520862.5 |
||
| CDS CCA 90 bp | TCTCTTGCAGTTCCTGTGGATTTAAAGTCCAGACATGGCCTTAGCTaGGTCTTCTGTAAGCTGCAATCCAGGTGCCAGCCAGGATTGAAT | + |
|
Preference number: 5 (lower is better) Translates to: SLAVPVDLKSRHGLS*VFCKLQSRCQPGLN Trigger: ATTCAATCCTGGCTGGCACCTGGATTGCAGCTTACAGAAGACCCAGCTAAGGCCATGTCTGGACTTTAAATCCACAGGAACTGCAAGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000523042.5 |
||
| CDS TCA 90 bp | TATTATTGCCAGGTGGGGGTAGAAATCCAAACTTCTCACATACACTaGTCCCTTTCAGTTAATGTAGTGGTTTCATTTTTCCTAGGTTTT | + |
|
Preference number: 5 (lower is better) Translates to: YYCQVGVEIQTSHIH*SLSVNVVVSFFLGF Trigger: AAAACCTAGGAAAAATGAAACCACTACATTAACTGAAAGGGATCAGTGTATGTGAGAAGTTTGGATTTCTACCCCCACCTGGCAATAATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000517953.5 |
||
| CDS GCA 90 bp | TCTTTTACTCAAACCTCAGATTCCCCTCACAATATGTCTTGTATCTaGCCATTCTTTCCTATTCAAATCATATTCGCAGATTCAGGTGTT | + |
|
Preference number: 5 (lower is better) Translates to: SFTQTSDSPHNMSCI*PFFPIQIIFADSGV Trigger: AACACCTGAATCTGCGAATATGATTTGAATAGGAAAGAATGGGCAGATACAAGACATATTGTGAGGGGAATCTGAGGTTTGAGTAAAAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000520097.5 |
||
| CDS GCA 72 bp | CCCTGCGCCCGGTGGGTCCCAAGCCTGGTCACTCAATaGTCCTGGGGGTTGCTAGATGCCCCACTGCAGGTC | + |
|
Preference number: 6 (lower is better) Translates to: PCARWVPSLVTQ*SWGLLDAPLQV Trigger: GACCTGCAGTGGGGCATCTAGCAACCCCCAGGAGCATTGAGTGACCAGGCTTGGGACCCACCGGGCGCAGGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENST00000518593.5 ENST00000519452.5 ENST00000519967.5 ENST00000520862.5 ENST00000523042.5 |
||
| CDS CAA 72 bp | TGGGTCCCAAGCCTGGTCACTCAATGCTCCTGGGGGTaGCTAGATGCCCCACTGCAGGTCCCACTTCTGATA | + |
|
Preference number: 6 (lower is better) Translates to: WVPSLVTQCSWG*LDAPLQVPLLI Trigger: TATCAGAAGTGGGACCTGCAGTGGGGCATCTAGCAACCCCCAGGAGCATTGAGTGACCAGGCTTGGGACCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENST00000518593.5 ENST00000519452.5 ENST00000519967.5 ENST00000520862.5 ENST00000523042.5 |
||
| CDS GCA 72 bp | AAGCCTGGTCACTCAATGCTCCTGGGGGTTGCTAGATaGCCCACTGCAGGTCCCACTTCTGATACCATCTTG | + |
|
Preference number: 6 (lower is better) Translates to: KPGHSMLLGVAR*PTAGPTSDTIL Trigger: CAAGATGGTATCAGAAGTGGGACCTGCAGTGGGGCATCTAGCAACCCCCAGGAGCATTGAGTGACCAGGCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000518593.5 ENST00000519452.5 ENST00000519967.5 ENST00000520862.5 |
||
| CDS GCA 72 bp | AAGCCTGGTCACTCAATGCTCCTGGGGGTTGCTAGATaGCCCACTGCAGGTCCCACTTCTGATACCATCCAT | + |
|
Preference number: 6 (lower is better) Translates to: KPGHSMLLGVAR*PTAGPTSDTIH Trigger: ATGGATGGTATCAGAAGTGGGACCTGCAGTGGGGCATCTAGCAACCCCCAGGAGCATTGAGTGACCAGGCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000523042.5 |
||
| CDS TCA 72 bp | TCTTCTGTAAGCTGCAATCCAGGTGCCAGCCAGGATTaGATTCTCACCTGGAGGCTTGACTGGGGAAGGATC | + |
|
Preference number: 6 (lower is better) Translates to: SSVSCNPGASQD*ILTWRLDWGRI Trigger: GATCCTTCCCCAGTCAAGCCTCCAGGTGAGAATTCAATCCTGGCTGGCACCTGGATTGCAGCTTACAGAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000518593.5 ENST00000520862.5 ENST00000523042.5 |
||
| CDS GCA 72 bp | GATGCCCCACTGCAGGTCCCACTTCTGATACCATCTTaGAGTTCCTGTGGATTTAAAGTCCAGACATGGCCT | + |
|
Preference number: 6 (lower is better) Translates to: DAPLQVPLLIPS*SSCGFKVQTWP Trigger: AGGCCATGTCTGGACTTTAAATCCACAGGAACTGCAAGATGGTATCAGAAGTGGGACCTGCAGTGGGGCATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000518593.5 ENST00000519452.5 ENST00000519967.5 ENST00000520862.5 |
||
| CDS CAA 72 bp | CAGGTGCCAGCCAGGATTGAATTCTCACCTGGAGGCTaGACTGGGGAAGGATCTAGTTTTAAGCTCACTCAA | + |
|
Preference number: 6 (lower is better) Translates to: QVPARIEFSPGG*TGEGSSFKLTQ Trigger: TTGAGTGAGCTTAAAACTAGATCCTTCCCCAGTCAAGCCTCCAGGTGAGAATTCAATCCTGGCTGGCACCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000518593.5 ENST00000520862.5 ENST00000523042.5 |
||
| CDS CAA 72 bp | GGCAGCTTGTTCTTCAAAGCCTCCCAACCTGTGCAGTaGGTTGTCCACGACTCTACTTTCTTGAGAAAAGTG | + |
|
Preference number: 6 (lower is better) Translates to: GSLFFKASQPVQ*VVHDSTFLRKV Trigger: CACTTTTCTCAAGAAAGTAGAGTCGTGGACAACCAACTGCACAGGTTGGGAGGCTTTGAAGAACAAGCTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000520862.5 |
||
| CDS CAA 90 bp | CCATCAGATTCTCCTGGTATCCCTATTGCTCCCCGTAGGCATACTTaGGACATCTCTAGAAGTCTCCAAGACTGTTTTTCATGCTGCACT | + |
|
Preference number: 6 (lower is better) Translates to: PSDSPGIPIAPRRHT*DISRSLQDCFSCCT Trigger: AGTGCAGCATGAAAAACAGTCTTGGAGACTTCTAGAGATGTCCAAAGTATGCCTACGGGGAGCAATAGGGATACCAGGAGAATCTGATGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000519766.1 |
||
| CDS CAA 90 bp | ATACTCCCCGTCCTTGGTCACTTAGTCACCAGCTGGGTTATCACATaGACTGTAGCGGCATTGCAGTGCTTGTGTTCAAGTAATCCTTAT | + |
|
Preference number: 6 (lower is better) Translates to: ILPVLGHLVTSWVIT*TVAALQCLCSSNPY Trigger: ATAAGGATTACTTGAACACAAGCACTGCAATGCCGCTACAGTCAATGTGATAACCCAGCTGGTGACTAAGTGACCAAGGACGGGGAGTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000521501.1 |
||
| CDS GCA 72 bp | CACAGTGCAAGAGTAGTGATGCTGGCGATTCTGATATaGCCAAAAGAAGCTGTCAAATCCTTCCCTTTCAGT | + |
|
Preference number: 6 (lower is better) Translates to: HSARVVMLAILI*PKEAVKSFPFS Trigger: ACTGAAAGGGAAGGATTTGACAGCTTCTTTTGGGCATATCAGAATCGCCAGCATCACTACTCTTGCACTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000521501.1 |
||
| CDS CAA 72 bp | GATGATGGAATAATGAAGAATATCCACAATTCTCAGTaGCTTCGAGAGAACAATGGACACCCTGCGCCCGGT | + |
|
Preference number: 6 (lower is better) Translates to: DDGIMKNIHNSQ*LRENNGHPAPG Trigger: ACCGGGCGCAGGGTGTCCATTGTTCTCTCGAAGCAACTGAGAATTGTGGATATTCTTCATTATTCCATCATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000517953.5 ENST00000518593.5 ENST00000519452.5 ENST00000519967.5 ENST00000520097.5 ENST00000520862.5 ENST00000523042.5 |
||
| CDS CAA 72 bp | TCTCCTGGTATCCCTATTGCTCCCCGTAGGCATACTTaGGACATCTCTAGAAGTCTCCAAGACTGTTTTTCA | + |
|
Preference number: 6 (lower is better) Translates to: SPGIPIAPRRHT*DISRSLQDCFS Trigger: TGAAAAACAGTCTTGGAGACTTCTAGAGATGTCCAAAGTATGCCTACGGGGAGCAATAGGGATACCAGGAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000519766.1 |
||
| CDS CAA 72 bp | ATATACGTCTACCATCAGATTCTCCTGGTATCCCTATaGCTCCCCGTAGGCATACTTTGGACATCTCTAGAA | + |
|
Preference number: 6 (lower is better) Translates to: IYVYHQILLVSL*LPVGILWTSLE Trigger: TTCTAGAGATGTCCAAAGTATGCCTACGGGGAGCAATAGGGATACCAGGAGAATCTGATGGTAGACGTATAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000519766.1 |
||
| CDS CAA 72 bp | GTCACCAGCTGGGTTATCACATTGACTGTAGCGGCATaGCAGTGCTTGTGTTCAAGTAATCCTTATTTCACT | + |
|
Preference number: 6 (lower is better) Translates to: VTSWVITLTVAA*QCLCSSNPYFT Trigger: AGTGAAATAAGGATTACTTGAACACAAGCACTGCAATGCCGCTACAGTCAATGTGATAACCCAGCTGGTGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000521501.1 |
||
| CDS CCA 72 bp | CAGGTGTTCATTAACTCTGGCATATTAACTAGTTTGTaGGCTGTCAGAGAAGAACTTCAGACGAGAACTGTC | + |
|
Preference number: 6 (lower is better) Translates to: QVFINSGILTSL*AVREELQTRTV Trigger: GACAGTTCTCGTCTGAAGTTCTTCTCTGACAGCCCACAAACTAGTTAATATGCCAGAGTTAATGAACACCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000520097.5 |
||
| CDS TCA 72 bp | CAGGTGGGGGTAGAAATCCAAACTTCTCACATACACTaGTCCCTTTCAGTTAATGTAGTGGTTTCATTTTTC | + |
|
Preference number: 6 (lower is better) Translates to: QVGVEIQTSHIH*SLSVNVVVSFF Trigger: GAAAAATGAAACCACTACATTAACTGAAAGGGATCAGTGTATGTGAGAAGTTTGGATTTCTACCCCCACCTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000517953.5 |
||
| CDS CAA 72 bp | TGCAAAGCTATATCAAATGGCATAAGTGACTTCATGTaGTATTTTCCCTGGCTTCTTCTATTCCACCGGATG | + |
|
Preference number: 6 (lower is better) Translates to: CKAISNGISDFM*YFPWLLLFHRM Trigger: CATCCGGTGGAATAGAAGAAGCCAGGGAAAATACAACATGAAGTCACTTATGCCATTTGATATAGCTTTGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000519990.1 |
||
| CDS CAA 72 bp | ATTCAGGTGTTCATTAACTCTGGCATATTAACTAGTTaGTGGGCTGTCAGAGAAGAACTTCAGACGAGAACT | + |
|
Preference number: 6 (lower is better) Translates to: IQVFINSGILTS*WAVREELQTRT Trigger: AGTTCTCGTCTGAAGTTCTTCTCTGACAGCCCACAAACTAGTTAATATGCCAGAGTTAATGAACACCTGAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000520097.5 |
||
| CDS CAA 90 bp | CAAGAAATCTTTTACTCAAACCTCAGATTCCCCTCACAATATGTCTaGTATCTGCCCATTCTTTCCTATTCAAATCATATTCGCAGATTC | + |
|
Preference number: 6 (lower is better) Translates to: QEIFYSNLRFPSQYV*YLPILSYSNHIRRF Trigger: GAATCTGCGAATATGATTTGAATAGGAAAGAATGGGCAGATACAAGACATATTGTGAGGGGAATCTGAGGTTTGAGTAAAAGATTTCTTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000520097.5 |
||
| CDS TCA 72 bp | CTCAGGAGAGATCTTATAGGCCAGGAGAAAGTGCGATaGCGTATACAAAGTGATGAAGTAAAAATAATAATT | + |
|
Preference number: 6 (lower is better) Translates to: LRRDLIGQEKVR*RIQSDEVKIII Trigger: AATTATTATTTTTACTTCATCACTTTGTATACGTCATCGCACTTTCTCCTGGCCTATAAGATCTCTCCTGAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000519990.1 ENST00000523728.1 |
||
| CDS CAA 72 bp | TTTTACTCAAACCTCAGATTCCCCTCACAATATGTCTaGTATCTGCCCATTCTTTCCTATTCAAATCATATT | + |
|
Preference number: 6 (lower is better) Translates to: FYSNLRFPSQYV*YLPILSYSNHI Trigger: AATATGATTTGAATAGGAAAGAATGGGCAGATACAAGACATATTGTGAGGGGAATCTGAGGTTTGAGTAAAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000520097.5 |
||