Pregenerated sensors for LINC02841 (Homo sapiens)
Ensembl gene IDs: ENSG00000267407Ensembl transcript IDs: ENST00000593063.1, ENST00000664841.1
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TCCTGTTCGGTTTCCAGAACTCTTCCAGTGTCTTTGAGAAGGACTTaGAGAGATGGTGTGTCTGTTTCCACGGCCCTGCCTCTTCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: SCSVSRTLPVSLRRT*RDGVSVSTALPLLS Trigger: GGAGAGAAGAGGCAGGGCCGTGGAAACAGACACACCATCTCTCCAAGTCCTTCTCAAAGACACTGGAAGAGTTCTGGAAACCGAACAGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000593063.1 |
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| CDS TCA 90 bp | TACATTCCACATCCTGTTCGGTTTCCAGAACTCTTCCAGTGTCTTTaGGAAGGACTTGGAGAGATGGTGTGTCTGTTTCCACGGCCCTGC | + |
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Preference number: 5 (lower is better) Translates to: YIPHPVRFPELFQCL*EGLGEMVCLFPRPC Trigger: GCAGGGCCGTGGAAACAGACACACCATCTCTCCAAGTCCTTCTCAAAGACACTGGAAGAGTTCTGGAAACCGAACAGGATGTGGAATGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000593063.1 |
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| CDS GCA 72 bp | GACAGGACATCTCAGCTCTCAGGAAAGAGACCAGCCTaGAGGGCATACATTCCACATCCTGTTCGGTTTCCA | + |
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Preference number: 6 (lower is better) Translates to: DRTSQLSGKRPA*RAYIPHPVRFP Trigger: TGGAAACCGAACAGGATGTGGAATGTATGCCCTGCAGGCTGGTCTCTTTCCTGAGAGCTGAGATGTCCTGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000593063.1 |
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| CDS GCA 72 bp | TTCACTCATCAGTTCCCTCCACAGTTGTCCGACACGTaGCAGGCTCTGTTCTTAGGACAGGACATCTCAGCT | + |
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Preference number: 6 (lower is better) Translates to: FTHQFPPQLSDT*QALFLGQDISA Trigger: AGCTGAGATGTCCTGTCCTAAGAACAGAGCCTGGCACGTGTCGGACAACTGTGGAGGGAACTGATGAGTGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000593063.1 ENST00000664841.1 |
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| CDS GCA 72 bp | GACAGGACATCTCAGCTCTCAGGAAAGAGACCAGCCTaGAGGGCATACATTCCACATCTAGGAGCTGTAGGA | + |
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Preference number: 6 (lower is better) Translates to: DRTSQLSGKRPA*RAYIPHLGAVG Trigger: TCCTACAGCTCCTAGATGTGGAATGTATGCCCTGCAGGCTGGTCTCTTTCCTGAGAGCTGAGATGTCCTGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664841.1 |
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| CDS CAA 90 bp | ATCCTGTTCGGTTTCCAGAACTCTTCCAGTGTCTTTGAGAAGGACTaGGAGAGATGGTGTGTCTGTTTCCACGGCCCTGCCTCTTCTCTC | + |
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Preference number: 6 (lower is better) Translates to: ILFGFQNSSSVFEKD*ERWCVCFHGPASSL Trigger: GAGAGAAGAGGCAGGGCCGTGGAAACAGACACACCATCTCTCCAAGTCCTTCTCAAAGACACTGGAAGAGTTCTGGAAACCGAACAGGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000593063.1 |
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| CDS CCA 72 bp | AACTCTTCCAGTGTCTTTGAGAAGGACTTGGAGAGATaGTGTGTCTGTTTCCACGGCCCTGCCTCTTCTCTC | + |
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Preference number: 6 (lower is better) Translates to: NSSSVFEKDLER*CVCFHGPASSL Trigger: GAGAGAAGAGGCAGGGCCGTGGAAACAGACACACCATCTCTCCAAGTCCTTCTCAAAGACACTGGAAGAGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000593063.1 |
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| CDS CAA 90 bp | ATACATTCCACATCCTGTTCGGTTTCCAGAACTCTTCCAGTGTCTTaGAGAAGGACTTGGAGAGATGGTGTGTCTGTTTCCACGGCCCTG | + |
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Preference number: 6 (lower is better) Translates to: IHSTSCSVSRTLPVS*RRTWRDGVSVSTAL Trigger: CAGGGCCGTGGAAACAGACACACCATCTCTCCAAGTCCTTCTCAAAGACACTGGAAGAGTTCTGGAAACCGAACAGGATGTGGAATGTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000593063.1 |
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| CDS TCA 72 bp | AGGGCATACATTCCACATCTAGGAGCTGTAGGAGATTaGAAGCAAGGGGCCAGGGACATGAAGAAACATTTT | + |
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Preference number: 6 (lower is better) Translates to: RAYIPHLGAVGD*KQGARDMKKHF Trigger: AAAATGTTTCTTCATGTCCCTGGCCCCTTGCTTTCAATCTCCTACAGCTCCTAGATGTGGAATGTATGCCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664841.1 |
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