RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC02840 (Homo sapiens)

Ensembl gene IDs: ENSG00000224893

Ensembl transcript IDs: ENST00000417654.1, ENST00000652681.1, ENST00000654424.1, ENST00000656248.1, ENST00000657202.1, ENST00000658966.1, ENST00000659837.1, ENST00000663653.1, ENST00000666093.1, ENST00000667732.1, ENST00000670414.1, ENST00000670640.1, ENST00000671138.1

Found 111 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp CAGACCTGGCCGTGTATTGGTGGTGGGGAGGCAACTCTGGTGCCATaGAGGCTTCATCTAGAGACCCCAGTCCTACTCCGGCACAAACTC +
Preference number: 5 (lower is better)
Translates to: QTWPCIGGGEATLVP*RLHLETPVLLRHKL
Trigger: GAGTTTGTGCCGGAGTAGGACTGGGGTCTCTAGATGAAGCCTGCATGGCACCAGAGTTGCCTCCCCACCACCAATACACGGCCAGGTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS GCA 90 bp TCCTCTAGAAGCTGCTCTCTTGGTATGTCCCAGGACATGATCCCCTaGCACAGGCCCTTCCAGCTCATCCCTCATCTCCAATGGTGTGGC +
Preference number: 5 (lower is better)
Translates to: SSRSCSLGMSQDMIP*HRPFQLIPHLQWCG
Trigger: GCCACACCATTGGAGATGAGGGATGAGCTGGAAGGGCCTGTGGCAGGGGATCATGTCCTGGGACATACCAAGAGAGCAGCTTCTAGAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000654424.1
ENST00000656248.1
CDS GCA 90 bp TCCTCTAGAAGCTGCTCTCTTGGTATGTCCCAGGACATGATCCCCTaGCACAGGACCCCTTCCAGCTCATCCCTCATCTCCAATGGTGTG +
Preference number: 5 (lower is better)
Translates to: SSRSCSLGMSQDMIP*HRTPSSSSLISNGV
Trigger: CACACCATTGGAGATGAGGGATGAGCTGGAAGGGGTCCTGTGGCAGGGGATCATGTCCTGGGACATACCAAGAGAGCAGCTTCTAGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000657202.1
ENST00000659837.1
ENST00000666093.1
ENST00000670640.1
CDS GCA 90 bp GATTTGCGTGGGATCCTCTTGCTCTCAAGTCCCATGGGGATGATGTaGGGGCCGCAGATGGGAACTGGATACACAGTGGATTTGCAGCAT +
Preference number: 5 (lower is better)
Translates to: DLRGILLLSSPMGMM*GPQMGTGYTVDLQH
Trigger: ATGCTGCAAATCCACTGTGTATCCAGTTCCCATCTGCGGCCCGCACATCATCCCCATGGGACTTGAGAGCAAGAGGATCCCACGCAAATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENST00000652681.1
ENST00000654424.1
ENST00000656248.1
ENST00000658966.1
ENST00000663653.1
ENST00000666093.1
ENST00000667732.1
ENST00000670414.1
ENST00000670640.1
ENST00000671138.1
CDS CCA 90 bp CTGGCACACCCAGCAATGATGCACAGGGATGCCCAGAGCCCTTCGTaGATTGCTGCTCCAAACGCTTACCCTTCCCATTTTGTGATACTC +
Preference number: 5 (lower is better)
Translates to: LAHPAMMHRDAQSPS*IAAPNAYPSHFVIL
Trigger: GAGTATCACAAAATGGGAAGGGTAAGCGTTTGGAGCAGCAATCCACGAAGGGCTCTGGGCATCCCTGTGCATCATTGCTGGGTGTGCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS TCA 90 bp ATAATCAGTCCTCTAGAAGCTGCTCTCTTGGTATGTCCCAGGACATaGTCCCCTGCCACAGGCCCTTCCAGCTCATCCCTCATCTCCAAT +
Preference number: 5 (lower is better)
Translates to: IISPLEAALLVCPRT*SPATGPSSSSLISN
Trigger: ATTGGAGATGAGGGATGAGCTGGAAGGGCCTGTGGCAGGGGATCATGTCCTGGGACATACCAAGAGAGCAGCTTCTAGAGGACTGATTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000654424.1
ENST00000656248.1
CDS GCA 90 bp CTTTTCACATTCCAGTTCCTCTCTGATAATCAGTCCTCTAGAAGCTaGTCTCTTGGTATGTCCCAGGACATGATCCCCTGCCACAGGCCC +
Preference number: 5 (lower is better)
Translates to: LFTFQFLSDNQSSRS*SLGMSQDMIPCHRP
Trigger: GGGCCTGTGGCAGGGGATCATGTCCTGGGACATACCAAGAGAGCAGCTTCTAGAGGACTGATTATCAGAGAGGAACTGGAATGTGAAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000654424.1
ENST00000656248.1
CDS GCA 90 bp CTTTTCACATTCCAGTTCCTCTCTGATAATCAGTCCTCTAGAAGCTaGTCTCTTGGTATGTCCCAGGACATGATCCCCTGCCACAGGACC +
Preference number: 5 (lower is better)
Translates to: LFTFQFLSDNQSSRS*SLGMSQDMIPCHRT
Trigger: GGTCCTGTGGCAGGGGATCATGTCCTGGGACATACCAAGAGAGCAGCTTCTAGAGGACTGATTATCAGAGAGGAACTGGAATGTGAAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000657202.1
ENST00000659837.1
ENST00000666093.1
ENST00000670640.1
CDS CCA 90 bp AGGGAAACTAAAGAATCTTCAGGTTTTACAGACCTGGCCGTGTATTaGTGGTGGGGAGGCAACTCTGGTGCCATGCAGGCTTCATCTAGA +
Preference number: 5 (lower is better)
Translates to: RETKESSGFTDLAVY*WWGGNSGAMQASSR
Trigger: TCTAGATGAAGCCTGCATGGCACCAGAGTTGCCTCCCCACCACCAATACACGGCCAGGTCTGTAAAACCTGAAGATTCTTTAGTTTCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS GCA 90 bp AGGCATGGGGTTACCTCCATCTTCTTCCTGGCACAACAGAGCAACTaGCCCTTTTGCCATGCTCTTATGAATGCTTCAGGCAAATGTGAT +
Preference number: 5 (lower is better)
Translates to: RHGVTSIFFLAQQSN*PFCHALMNASGKCD
Trigger: ATCACATTTGCCTGAAGCATTCATAAGAGCATGGCAAAAGGGGCAGTTGCTCTGTTGTGCCAGGAAGAAGATGGAGGTAACCCCATGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000663653.1
ENST00000671138.1
CDS CCA 90 bp CACTGCGCCCAGCGTATATGCCTTTGTTACAGTGTCTATGTTACCTaGCACTGTGTGAATTATAGGGCATCTGCCCAACCAAGTCTCGAT +
Preference number: 5 (lower is better)
Translates to: HCAQRICLCYSVYVT*HCVNYRASAQPSLD
Trigger: ATCGAGACTTGGTTGGGCAGATGCCCTATAATTCACACAGTGCCAGGTAACATAGACACTGTAACAAAGGCATATACGCTGGGCGCAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS GCA 90 bp GTTACCTCCATCTTCTTCCTGGCACAACAGAGCAACTGCCCCTTTTaGCATGCTCTTATGAATGCTTCAGGCAAATGTGATTCCCAGGAA +
Preference number: 5 (lower is better)
Translates to: VTSIFFLAQQSNCPF*HALMNASGKCDSQE
Trigger: TTCCTGGGAATCACATTTGCCTGAAGCATTCATAAGAGCATGGCAAAAGGGGCAGTTGCTCTGTTGTGCCAGGAAGAAGATGGAGGTAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000663653.1
ENST00000671138.1
CDS CCA 90 bp CTCATTCATGGGCCTTTATCTTACTTTGTCTACTTATCTCCTGGGTaGGGACCTTGTCTCCTGCCCTCTCCCCTAAACTCATGTTTCTTC +
Preference number: 5 (lower is better)
Translates to: LIHGPLSYFVYLSPG*GPCLLPSPLNSCFF
Trigger: GAAGAAACATGAGTTTAGGGGAGAGGGCAGGAGACAAGGTCCCCACCCAGGAGATAAGTAGACAAAGTAAGATAAAGGCCCATGAATGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS CCA 90 bp CCCAGAGCAAACGCAGATGAAAACAGATGTCACATCAGCAAGCACTaGTCAGAGTCGTTTGTGTCTGGACTTCAGATGCTAGAAACAGCA +
Preference number: 5 (lower is better)
Translates to: PRANADENRCHISKH*SESFVSGLQMLETA
Trigger: TGCTGTTTCTAGCATCTGAAGTCCAGACACAAACGACTCTGACCAGTGCTTGCTGATGTGACATCTGTTTTCATCTGCGTTTGCTCTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS TCA 90 bp TCTTCCTGGCACAACAGAGCAACTGCCCCTTTTGCCATGCTCTTATaGATGCTTCAGGCAAATGTGATTCCCAGGAATCTTCAGGTGAAA +
Preference number: 5 (lower is better)
Translates to: SSWHNRATAPFAMLL*MLQANVIPRNLQVK
Trigger: TTTCACCTGAAGATTCCTGGGAATCACATTTGCCTGAAGCATTCATAAGAGCATGGCAAAAGGGGCAGTTGCTCTGTTGTGCCAGGAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000663653.1
ENST00000671138.1
CDS CCA 90 bp AAACAGATGTCACATCAGCAAGCACTGGTCAGAGTCGTTTGTGTCTaGACTTCAGATGCTAGAAACAGCAAACTAGAGGGCTTTGGCCTT +
Preference number: 5 (lower is better)
Translates to: KQMSHQQALVRVVCV*TSDARNSKLEGFGL
Trigger: AAGGCCAAAGCCCTCTAGTTTGCTGTTTCTAGCATCTGAAGTCCAGACACAAACGACTCTGACCAGTGCTTGCTGATGTGACATCTGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS TCA 90 bp CTGCACATGGAGACCTCTCTATCTCACTTATCTAGCTATACTACGTaGAGCAGTGATTTTCAACCTTGGCTGACATTAGACTACCCCGCA +
Preference number: 5 (lower is better)
Translates to: LHMETSLSHLSSYTT*SSDFQPWLTLDYPA
Trigger: TGCGGGGTAGTCTAATGTCAGCCAAGGTTGAAAATCACTGCTTCACGTAGTATAGCTAGATAAGTGAGATAGAGAGGTCTCCATGTGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000666093.1
CDS CCA 90 bp AGAACTTTGAAGTTCTCTTCTACAGCTTTGAGAGCTTTGGATAACTaGAATGAAGGCATGGGGTTACCTCCATCTTCTTCCTGGCACAAC +
Preference number: 5 (lower is better)
Translates to: RTLKFSSTALRALDN*NEGMGLPPSSSWHN
Trigger: GTTGTGCCAGGAAGAAGATGGAGGTAACCCCATGCCTTCATTCCAGTTATCCAAAGCTCTCAAAGCTGTAGAAGAGAACTTCAAAGTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000663653.1
ENST00000671138.1
CDS CCA 90 bp CCAGGCATGCTGATGGAGTTTTCACCAGTGACTTCAGTAAACTCTTaGGTCAACTTTCTGCCAAAAAGTACCTTGAGTCTCTTATGGGAA +
Preference number: 5 (lower is better)
Translates to: PGMLMEFSPVTSVNS*VNFLPKSTLSLLWE
Trigger: TTCCCATAAGAGACTCAAGGTACTTTTTGGCAGAAAGTTGACCCAAGAGTTTACTGAAGTCACTGGTGAAAACTCCATCAGCATGCCTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000666093.1
CDS TCA 90 bp ACCCATGCTCAAACTAAAGGCAATTCATGGCCTTACCTCAGTTCCTaGTGGGGTTATCTAAGGTTTTCAACAGTCATCAAGAGTGGACAT +
Preference number: 5 (lower is better)
Translates to: THAQTKGNSWPYLSS*WGYLRFSTVIKSGH
Trigger: ATGTCCACTCTTGATGACTGTTGAAAACCTTAGATAACCCCATCAGGAACTGAGGTAAGGCCATGAATTGCCTTTAGTTTGAGCATGGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000656248.1
ENST00000657202.1
ENST00000666093.1
ENST00000670640.1
CDS GCA 90 bp CCTTTCTCATCTGAGAGCCTTAATATGTACAATGTTTTTCTGGTCTaGAGCAGTGAGGGAGAATCTCCCGACTTTCCAGAAGAGTTAGAA +
Preference number: 5 (lower is better)
Translates to: PFSSESLNMYNVFLV*SSEGESPDFPEELE
Trigger: TTCTAACTCTTCTGGAAAGTCGGGAGATTCTCCCTCACTGCTGCAGACCAGAAAAACATTGTACATATTAAGGCTCTCAGATGAGAAAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000666093.1
CDS CCA 90 bp ATGAAAAAGACCTTTGGAGCAAAGCTGATGACAACTTCCCAGTGGTaGGTATATTCGTGCATTCCTTCTGTATTCTTATGGCTGTCTCTG +
Preference number: 5 (lower is better)
Translates to: MKKTFGAKLMTTSQW*VYSCIPSVFLWLSL
Trigger: CAGAGACAGCCATAAGAATACAGAAGGAATGCACGAATATACCCACCACTGGGAAGTTGTCATCAGCTTTGCTCCAAAGGTCTTTTTCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000666093.1
CDS TCA 90 bp TTCAAACAGACTCCTATGTCCTTTTCACATGGTCCCATCATTCTTTaGGCACGTTCTTACTTTCTGACACAGAAAGCTTCTCCAGGTTCA +
Preference number: 5 (lower is better)
Translates to: FKQTPMSFSHGPIIL*ARSYFLTQKASPGS
Trigger: TGAACCTGGAGAAGCTTTCTGTGTCAGAAAGTAAGAACGTGCTCAAAGAATGATGGGACCATGTGAAAAGGACATAGGAGTCTGTTTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000652681.1
ENST00000658966.1
ENST00000667732.1
CDS GCA 90 bp CTGACATTTTTATCCTCAGAGTTATCCTATATTTGGCCAGTGGGATaGCTTTCAAACAGACTCCTATGTCCTTTTCACATGGTCCCATCA +
Preference number: 5 (lower is better)
Translates to: LTFLSSELSYIWPVG*LSNRLLCPFHMVPS
Trigger: TGATGGGACCATGTGAAAAGGACATAGGAGTCTGTTTGAAAGGCATCCCACTGGCCAAATATAGGATAACTCTGAGGATAAAAATGTCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000652681.1
ENST00000658966.1
ENST00000667732.1
CDS CCA 90 bp ATGATGAAAAAGACCTTTGGAGCAAAGCTGATGACAACTTCCCAGTaGTGGGTATATTCGTGCATTCCTTCTGTATTCTTATGGCTGTCT +
Preference number: 5 (lower is better)
Translates to: MMKKTFGAKLMTTSQ*WVYSCIPSVFLWLS
Trigger: AGACAGCCATAAGAATACAGAAGGAATGCACGAATATACCCACCACTGGGAAGTTGTCATCAGCTTTGCTCCAAAGGTCTTTTTCATCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000666093.1
CDS GCA 90 bp AACATTCTTAGTGAGACACAGACACATCTCCCTATAACCCACCTATaGCTTAGGCTCATTCATGGGCCTTTATCTTACTTTGTCTACTTA +
Preference number: 5 (lower is better)
Translates to: NILSETQTHLPITHL*LRLIHGPLSYFVYL
Trigger: TAAGTAGACAAAGTAAGATAAAGGCCCATGAATGAGCCTAAGGCATAGGTGGGTTATAGGGAGATGTGTCTGTGTCTCACTAAGAATGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS CCA 90 bp GGTTATCTAAGGTTTTCAACAGTCATCAAGAGTGGACATGGTGTCTaGGAAGATACCTGCTTAATTGACTGCTTTTGTCCACTAATTACC +
Preference number: 5 (lower is better)
Translates to: GYLRFSTVIKSGHGV*EDTCLIDCFCPLIT
Trigger: GGTAATTAGTGGACAAAAGCAGTCAATTAAGCAGGTATCTTCCCAGACACCATGTCCACTCTTGATGACTGTTGAAAACCTTAGATAACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000656248.1
ENST00000657202.1
ENST00000666093.1
ENST00000670640.1
CDS CCA 90 bp TTTTTCATTCCATGCCCGAGAATTAGCCAGTTCTCCAGGGAGCCCTaGATCTTTTTAGAGACGAAAGGTATTTATAAACAAAGAGCTAAG +
Preference number: 5 (lower is better)
Translates to: FFIPCPRISQFSREP*IFLETKGIYKQRAK
Trigger: CTTAGCTCTTTGTTTATAAATACCTTTCGTCTCTAAAAAGATCCAGGGCTCCCTGGAGAACTGGCTAATTCTCGGGCATGGAATGAAAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000667732.1
CDS TCA 90 bp AGCGTATATGCCTTTGTTACAGTGTCTATGTTACCTGGCACTGTGTaGATTATAGGGCATCTGCCCAACCAAGTCTCGATAAATTTAATA +
Preference number: 5 (lower is better)
Translates to: SVYAFVTVSMLPGTV*IIGHLPNQVSINLI
Trigger: TATTAAATTTATCGAGACTTGGTTGGGCAGATGCCCTATAATTCACACAGTGCCAGGTAACATAGACACTGTAACAAAGGCATATACGCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS GCA 90 bp TTTCAGACTTGGAATTTGATTTTGGGTTATTTTAACGAGTTAGCCTaGCACGGTTTCATGGATGCTAATAGAAGATACAAGACTTCTGAG +
Preference number: 5 (lower is better)
Translates to: FQTWNLILGYFNELA*HGFMDANRRYKTSE
Trigger: CTCAGAAGTCTTGTATCTTCTATTAGCATCCATGAAACCGTGGCAGGCTAACTCGTTAAAATAACCCAAAATCAAATTCCAAGTCTGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000667732.1
CDS GCA 90 bp TTAGATAACTTAAGTGCTTGTATATTACCCCCGGCCAATTGTAAATaGTTGGAAAGGAAGCCTTATCGTATATGCCTTTGTTTATTTGTG +
Preference number: 5 (lower is better)
Translates to: LDNLSACILPPANCK*LERKPYRICLCLFV
Trigger: CACAAATAAACAAAGGCATATACGATAAGGCTTCCTTTCCAAGCATTTACAATTGGCCGGGGGTAATATACAAGCACTTAAGTTATCTAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS CCA 90 bp TATAATTCTTTACTGACATTTTTATCCTCAGAGTTATCCTATATTTaGCCAGTGGGATGCCTTTCAAACAGACTCCTATGTCCTTTTCAC +
Preference number: 5 (lower is better)
Translates to: YNSLLTFLSSELSYI*PVGCLSNRLLCPFH
Trigger: GTGAAAAGGACATAGGAGTCTGTTTGAAAGGCATCCCACTGGCCAAATATAGGATAACTCTGAGGATAAAAATGTCAGTAAAGAATTATA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000652681.1
ENST00000658966.1
ENST00000667732.1
CDS TCA 90 bp TGTCTAGTATTTCTTTCCCATCACATAATGGCATCTTTGAAGCTGTaGTCCCAAATTTTATCTAACGCTGTCTTCTTTTCCTATCAAGAA +
Preference number: 5 (lower is better)
Translates to: CLVFLSHHIMASLKL*SQILSNAVFFSYQE
Trigger: TTCTTGATAGGAAAAGAAGACAGCGTTAGATAAAATTTGGGATCACAGCTTCAAAGATGCCATTATGTGATGGGAAAGAAATACTAGACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS CCA 72 bp TTGAACAATGAGAACACATGGACACGAGGGTGGGGGTaGCATCACACACCGAGGCCTGTCAGGGAGTGGGGG +
Preference number: 6 (lower is better)
Translates to: LNNENTWTRGWG*HHTPRPVREWG
Trigger: CCCCCACTCCCTGACAGGCCTCGGTGTGTGATGCCACCCCCACCCTCGTGTCCATGTGTTCTCATTGTTCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000663653.1
ENST00000671138.1
CDS TCA 72 bp TGCGTGGGATCCTCTTGCTCTCAAGTCCCATGGGGATaGTGTGCGGGCCGCAGATGGGAACTGGATACACAG +
Preference number: 6 (lower is better)
Translates to: CVGSSCSQVPWG*CAGRRWELDTQ
Trigger: CTGTGTATCCAGTTCCCATCTGCGGCCCGCACATCATCCCCATGGGACTTGAGAGCAAGAGGATCCCACGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENST00000652681.1
ENST00000654424.1
ENST00000656248.1
ENST00000658966.1
ENST00000663653.1
ENST00000666093.1
ENST00000667732.1
ENST00000670414.1
ENST00000670640.1
ENST00000671138.1
CDS TCA 72 bp CCTCTAGAAGCTGCTCTCTTGGTATGTCCCAGGACATaGTCCCCTGCCACAGGCCCTTCCAGCTCATCCCTC +
Preference number: 6 (lower is better)
Translates to: PLEAALLVCPRT*SPATGPSSSSL
Trigger: GAGGGATGAGCTGGAAGGGCCTGTGGCAGGGGATCATGTCCTGGGACATACCAAGAGAGCAGCTTCTAGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000654424.1
ENST00000656248.1
CDS GCA 72 bp AGCTGCTCTCTTGGTATGTCCCAGGACATGATCCCCTaGCACAGGACCCCTTCCAGCTCATCCCTCATCTCC +
Preference number: 6 (lower is better)
Translates to: SCSLGMSQDMIP*HRTPSSSSLIS
Trigger: GGAGATGAGGGATGAGCTGGAAGGGGTCCTGTGGCAGGGGATCATGTCCTGGGACATACCAAGAGAGCAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000657202.1
ENST00000659837.1
ENST00000666093.1
ENST00000670640.1
CDS CCA 72 bp TGGGAGTTGAACAATGAGAACACATGGACACGAGGGTaGGGGTGGCATCACACACCGAGGCCTGTCAGGGAG +
Preference number: 6 (lower is better)
Translates to: WELNNENTWTRG*GWHHTPRPVRE
Trigger: CTCCCTGACAGGCCTCGGTGTGTGATGCCACCCCCACCCTCGTGTCCATGTGTTCTCATTGTTCAACTCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000663653.1
ENST00000671138.1
CDS GCA 72 bp GGGATCCTCTTGCTCTCAAGTCCCATGGGGATGATGTaGGGGCCGCAGATGGGAACTGGATACACAGTGGAT +
Preference number: 6 (lower is better)
Translates to: GILLLSSPMGMM*GPQMGTGYTVD
Trigger: ATCCACTGTGTATCCAGTTCCCATCTGCGGCCCGCACATCATCCCCATGGGACTTGAGAGCAAGAGGATCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENST00000652681.1
ENST00000654424.1
ENST00000656248.1
ENST00000658966.1
ENST00000663653.1
ENST00000666093.1
ENST00000667732.1
ENST00000670414.1
ENST00000670640.1
ENST00000671138.1
CDS GCA 72 bp AGCTGCTCTCTTGGTATGTCCCAGGACATGATCCCCTaGCACAGGCCCTTCCAGCTCATCCCTCATCTCCAA +
Preference number: 6 (lower is better)
Translates to: SCSLGMSQDMIP*HRPFQLIPHLQ
Trigger: TTGGAGATGAGGGATGAGCTGGAAGGGCCTGTGGCAGGGGATCATGTCCTGGGACATACCAAGAGAGCAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000654424.1
ENST00000656248.1
CDS CAA 72 bp GAGCATAGCAAGCAACATGATTTGCGTGGGATCCTCTaGCTCTCAAGTCCCATGGGGATGATGTGCGGGCCG +
Preference number: 6 (lower is better)
Translates to: EHSKQHDLRGIL*LSSPMGMMCGP
Trigger: CGGCCCGCACATCATCCCCATGGGACTTGAGAGCAAGAGGATCCCACGCAAATCATGTTGCTTGCTATGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000654424.1
ENST00000666093.1
CDS CAA 72 bp CAGCATAGCAAGCAACATGATTTGCGTGGGATCCTCTaGCTCTCAAGTCCCATGGGGATGATGTGCGGGCCG +
Preference number: 6 (lower is better)
Translates to: QHSKQHDLRGIL*LSSPMGMMCGP
Trigger: CGGCCCGCACATCATCCCCATGGGACTTGAGAGCAAGAGGATCCCACGCAAATCATGTTGCTTGCTATGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000652681.1
ENST00000656248.1
ENST00000663653.1
ENST00000667732.1
ENST00000670640.1
ENST00000671138.1
CDS GCA 72 bp GTTCTCCAGGGAGCCAGCATAGCAAGCAACATGATTTaGGTGGGATCCTCTTGCTCTCAAGTCCCATGGGGA +
Preference number: 6 (lower is better)
Translates to: VLQGASIASNMI*VGSSCSQVPWG
Trigger: TCCCCATGGGACTTGAGAGCAAGAGGATCCCACGCAAATCATGTTGCTTGCTATGCTGGCTCCCTGGAGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000652681.1
CDS GCA 72 bp CAGGGAGCCCTGGATAGCATAGCAAGCAACATGATTTaGGTGGGATCCTCTTGCTCTCAAGTCCCATGGGGA +
Preference number: 6 (lower is better)
Translates to: QGALDSIASNMI*VGSSCSQVPWG
Trigger: TCCCCATGGGACTTGAGAGCAAGAGGATCCCACGCAAATCATGTTGCTTGCTATGCTATCCAGGGCTCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000658966.1
CDS CCA 72 bp TCTTCAGGTTTTACAGACCTGGCCGTGTATTGGTGGTaGGGAGGCAACTCTGGTGCCATGCAGGCTTCATCT +
Preference number: 6 (lower is better)
Translates to: SSGFTDLAVYWW*GGNSGAMQASS
Trigger: AGATGAAGCCTGCATGGCACCAGAGTTGCCTCCCCACCACCAATACACGGCCAGGTCTGTAAAACCTGAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS CAA 72 bp CATTCCAGGCAGCAGGAGCATAGCAAGCAACATGATTaGCGTGGGATCCTCTTGCTCTCAAGTCCCATGGGG +
Preference number: 6 (lower is better)
Translates to: HSRQQEHSKQHD*RGILLLSSPMG
Trigger: CCCCATGGGACTTGAGAGCAAGAGGATCCCACGCAAATCATGTTGCTTGCTATGCTCCTGCTGCCTGGAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000654424.1
ENST00000666093.1
CDS CAA 72 bp AGTTCTCCAGGGAGCCAGCATAGCAAGCAACATGATTaGCGTGGGATCCTCTTGCTCTCAAGTCCCATGGGG +
Preference number: 6 (lower is better)
Translates to: SSPGSQHSKQHD*RGILLLSSPMG
Trigger: CCCCATGGGACTTGAGAGCAAGAGGATCCCACGCAAATCATGTTGCTTGCTATGCTGGCTCCCTGGAGAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000652681.1
CDS GCA 72 bp ATTCCAGGCAGCAGGAGCATAGCAAGCAACATGATTTaGGTGGGATCCTCTTGCTCTCAAGTCCCATGGGGA +
Preference number: 6 (lower is better)
Translates to: IPGSRSIASNMI*VGSSCSQVPWG
Trigger: TCCCCATGGGACTTGAGAGCAAGAGGATCCCACGCAAATCATGTTGCTTGCTATGCTCCTGCTGCCTGGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000654424.1
ENST00000666093.1
CDS GCA 72 bp GATGCACAGGGATGCCCAGAGCCCTTCGTGGATTGCTaGTCCAAACGCTTACCCTTCCCATTTTGTGATACT +
Preference number: 6 (lower is better)
Translates to: DAQGCPEPFVDC*SKRLPFPFCDT
Trigger: AGTATCACAAAATGGGAAGGGTAAGCGTTTGGAGCAGCAATCCACGAAGGGCTCTGGGCATCCCTGTGCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS CCA 72 bp AAAGAATCTTCAGGTTTTACAGACCTGGCCGTGTATTaGTGGTGGGGAGGCAACTCTGGTGCCATGCAGGCT +
Preference number: 6 (lower is better)
Translates to: KESSGFTDLAVY*WWGGNSGAMQA
Trigger: AGCCTGCATGGCACCAGAGTTGCCTCCCCACCACCAATACACGGCCAGGTCTGTAAAACCTGAAGATTCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS CAA 72 bp GTCCGCATCTCCAAACAGCATAGCAAGCAACATGATTaGCGTGGGATCCTCTTGCTCTCAAGTCCCATGGGG +
Preference number: 6 (lower is better)
Translates to: VRISKQHSKQHD*RGILLLSSPMG
Trigger: CCCCATGGGACTTGAGAGCAAGAGGATCCCACGCAAATCATGTTGCTTGCTATGCTGTTTGGAGATGCGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000656248.1
ENST00000670640.1
CDS CAA 90 bp GAATTAGCCAGTTCTCCAGGGAGCCAGCATAGCAAGCAACATGATTaGCGTGGGATCCTCTTGCTCTCAAGTCCCATGGGGATGATGTGC +
Preference number: 6 (lower is better)
Translates to: ELASSPGSQHSKQHD*RGILLLSSPMGMMC
Trigger: GCACATCATCCCCATGGGACTTGAGAGCAAGAGGATCCCACGCAAATCATGTTGCTTGCTATGCTGGCTCCCTGGAGAACTGGCTAATTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000652681.1
CDS CAA 90 bp TCACATATGCATTCCAGGCAGCAGGAGCATAGCAAGCAACATGATTaGCGTGGGATCCTCTTGCTCTCAAGTCCCATGGGGATGATGTGC +
Preference number: 6 (lower is better)
Translates to: SHMHSRQQEHSKQHD*RGILLLSSPMGMMC
Trigger: GCACATCATCCCCATGGGACTTGAGAGCAAGAGGATCCCACGCAAATCATGTTGCTTGCTATGCTCCTGCTGCCTGGAATGCATATGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000654424.1
ENST00000666093.1
CDS TCA 72 bp CACATATGCATTCCAGGCAGCAGGATGATCACCAGGTaGAATCGCACAGTAGGCCATCTGCAAGCTGAGGAA +
Preference number: 6 (lower is better)
Translates to: HICIPGSRMITR*NRTVGHLQAEE
Trigger: TTCCTCAGCTTGCAGATGGCCTACTGTGCGATTTCACCTGGTGATCATCCTGCTGCCTGGAATGCATATGTG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000656248.1
ENST00000657202.1
ENST00000670640.1
CDS GCA 72 bp AATGATGCACAGGGATGCCCAGAGCCCTTCGTGGATTaGTGCTCCAAACGCTTACCCTTCCCATTTTGTGAT +
Preference number: 6 (lower is better)
Translates to: NDAQGCPEPFVD*CSKRLPFPFCD
Trigger: ATCACAAAATGGGAAGGGTAAGCGTTTGGAGCAGCAATCCACGAAGGGCTCTGGGCATCCCTGTGCATCATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS GCA 72 bp TCCGCATCTCCAAACAGCATAGCAAGCAACATGATTTaGGTGGGATCCTCTTGCTCTCAAGTCCCATGGGGA +
Preference number: 6 (lower is better)
Translates to: SASPNSIASNMI*VGSSCSQVPWG
Trigger: TCCCCATGGGACTTGAGAGCAAGAGGATCCCACGCAAATCATGTTGCTTGCTATGCTGTTTGGAGATGCGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000656248.1
ENST00000670640.1
CDS CAA 90 bp ACACCAGCCTCTCCTTCATCTATACAGCATAGCAAGCAACATGATTaGCGTGGGATCCTCTTGCTCTCAAGTCCCATGGGGATGATGTGC +
Preference number: 6 (lower is better)
Translates to: TPASPSSIQHSKQHD*RGILLLSSPMGMMC
Trigger: GCACATCATCCCCATGGGACTTGAGAGCAAGAGGATCCCACGCAAATCATGTTGCTTGCTATGCTGTATAGATGAAGGAGAGGCTGGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000663653.1
ENST00000671138.1
CDS GCA 72 bp TTCCAGTTCCTCTCTGATAATCAGTCCTCTAGAAGCTaGTCTCTTGGTATGTCCCAGGACATGATCCCCTGC +
Preference number: 6 (lower is better)
Translates to: FQFLSDNQSSRS*SLGMSQDMIPC
Trigger: GCAGGGGATCATGTCCTGGGACATACCAAGAGAGCAGCTTCTAGAGGACTGATTATCAGAGAGGAACTGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000654424.1
ENST00000656248.1
ENST00000657202.1
ENST00000659837.1
ENST00000666093.1
ENST00000670640.1
CDS GCA 72 bp GTTACCTCCATCTTCTTCCTGGCACAACAGAGCAACTaGCCCTTTTGCCATGCTCTTATGAATGCTTCAGGC +
Preference number: 6 (lower is better)
Translates to: VTSIFFLAQQSN*PFCHALMNASG
Trigger: GCCTGAAGCATTCATAAGAGCATGGCAAAAGGGGCAGTTGCTCTGTTGTGCCAGGAAGAAGATGGAGGTAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000663653.1
ENST00000671138.1
CDS CCA 72 bp TGCCACAGGCCCTTCCAGCTCATCCCTCATCTCCAATaGTGTGGCACTTTTCCTCATGATCCAAAATTAGAG +
Preference number: 6 (lower is better)
Translates to: CHRPFQLIPHLQ*CGTFPHDPKLE
Trigger: CTCTAATTTTGGATCATGAGGAAAAGTGCCACACCATTGGAGATGAGGGATGAGCTGGAAGGGCCTGTGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000654424.1
ENST00000656248.1
CDS TCA 72 bp ACCAAATACCACATGTCCTCACTCATAAGTGGGAGTTaGACAATGAGAACACATGGACACGAGGGTGGGGGT +
Preference number: 6 (lower is better)
Translates to: TKYHMSSLISGS*TMRTHGHEGGG
Trigger: ACCCCCACCCTCGTGTCCATGTGTTCTCATTGTTCAACTCCCACTTATGAGTGAGGACATGTGGTATTTGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000663653.1
ENST00000671138.1
CDS GCA 72 bp CTCCTTCATCTATACAGCATAGCAAGCAACATGATTTaGGTGGGATCCTCTTGCTCTCAAGTCCCATGGGGA +
Preference number: 6 (lower is better)
Translates to: LLHLYSIASNMI*VGSSCSQVPWG
Trigger: TCCCCATGGGACTTGAGAGCAAGAGGATCCCACGCAAATCATGTTGCTTGCTATGCTGTATAGATGAAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000663653.1
ENST00000671138.1
CDS GCA 72 bp GGACATTTTACTCACAGCATAGCAAGCAACATGATTTaGGTGGGATCCTCTTGCTCTCAAGTCCCATGGGGA +
Preference number: 6 (lower is better)
Translates to: GHFTHSIASNMI*VGSSCSQVPWG
Trigger: TCCCCATGGGACTTGAGAGCAAGAGGATCCCACGCAAATCATGTTGCTTGCTATGCTGTGAGTAAAATGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000667732.1
CDS CCA 72 bp AAAGGGAAACTAAAGAATCTTCAGGTTTTACAGACCTaGCCGTGTATTGGTGGTGGGGAGGCAACTCTGGTG +
Preference number: 6 (lower is better)
Translates to: KGKLKNLQVLQT*PCIGGGEATLV
Trigger: CACCAGAGTTGCCTCCCCACCACCAATACACGGCCAGGTCTGTAAAACCTGAAGATTCTTTAGTTTCCCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS CAA 72 bp TCTCCTTCATCTATACAGCATAGCAAGCAACATGATTaGCGTGGGATCCTCTTGCTCTCAAGTCCCATGGGG +
Preference number: 6 (lower is better)
Translates to: SPSSIQHSKQHD*RGILLLSSPMG
Trigger: CCCCATGGGACTTGAGAGCAAGAGGATCCCACGCAAATCATGTTGCTTGCTATGCTGTATAGATGAAGGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000663653.1
ENST00000671138.1
CDS CAA 72 bp AACCAAATACCACATGTCCTCACTCATAAGTGGGAGTaGAACAATGAGAACACATGGACACGAGGGTGGGGG +
Preference number: 6 (lower is better)
Translates to: NQIPHVLTHKWE*NNENTWTRGWG
Trigger: CCCCCACCCTCGTGTCCATGTGTTCTCATTGTTCAACTCCCACTTATGAGTGAGGACATGTGGTATTTGGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000663653.1
ENST00000671138.1
CDS CAA 72 bp AGGACATTTTACTCACAGCATAGCAAGCAACATGATTaGCGTGGGATCCTCTTGCTCTCAAGTCCCATGGGG +
Preference number: 6 (lower is better)
Translates to: RTFYSQHSKQHD*RGILLLSSPMG
Trigger: CCCCATGGGACTTGAGAGCAAGAGGATCCCACGCAAATCATGTTGCTTGCTATGCTGTGAGTAAAATGTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000667732.1
CDS CAA 72 bp ATCTTACTTTGTCTACTTATCTCCTGGGTGGGGACCTaGTCTCCTGCCCTCTCCCCTAAACTCATGTTTCTT +
Preference number: 6 (lower is better)
Translates to: ILLCLLISWVGT*SPALSPKLMFL
Trigger: AAGAAACATGAGTTTAGGGGAGAGGGCAGGAGACAAGGTCCCCACCCAGGAGATAAGTAGACAAAGTAAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS CAA 90 bp TGGGCCTTTATCTTACTTTGTCTACTTATCTCCTGGGTGGGGACCTaGTCTCCTGCCCTCTCCCCTAAACTCATGTTTCTTCACATAAAA +
Preference number: 6 (lower is better)
Translates to: WAFILLCLLISWVGT*SPALSPKLMFLHIK
Trigger: TTTTATGTGAAGAAACATGAGTTTAGGGGAGAGGGCAGGAGACAAGGTCCCCACCCAGGAGATAAGTAGACAAAGTAAGATAAAGGCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS CAA 90 bp GCCAGGCATGCTGATGGAGTTTTCACCAGTGACTTCAGTAAACTCTaGGGTCAACTTTCTGCCAAAAAGTACCTTGAGTCTCTTATGGGA +
Preference number: 6 (lower is better)
Translates to: ARHADGVFTSDFSKL*GQLSAKKYLESLMG
Trigger: TCCCATAAGAGACTCAAGGTACTTTTTGGCAGAAAGTTGACCCAAGAGTTTACTGAAGTCACTGGTGAAAACTCCATCAGCATGCCTGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000666093.1
CDS TCA 72 bp CATCCCTCATCTCCAATGGTGTGGCACTTTTCCTCATaGTCCAAAATTAGAGCTAGCATTCCAGCCATCACA +
Preference number: 6 (lower is better)
Translates to: HPSSPMVWHFSS*SKIRASIPAIT
Trigger: TGTGATGGCTGGAATGCTAGCTCTAATTTTGGATCATGAGGAAAAGTGCCACACCATTGGAGATGAGGGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000654424.1
ENST00000656248.1
ENST00000657202.1
ENST00000659837.1
ENST00000666093.1
ENST00000670640.1
CDS TCA 72 bp CACAACAGAGCAACTGCCCCTTTTGCCATGCTCTTATaGATGCTTCAGGCAAATGTGATTCCCAGGAATCTT +
Preference number: 6 (lower is better)
Translates to: HNRATAPFAMLL*MLQANVIPRNL
Trigger: AAGATTCCTGGGAATCACATTTGCCTGAAGCATTCATAAGAGCATGGCAAAAGGGGCAGTTGCTCTGTTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000663653.1
ENST00000671138.1
CDS TCA 72 bp GCCTTTGTTACAGTGTCTATGTTACCTGGCACTGTGTaGATTATAGGGCATCTGCCCAACCAAGTCTCGATA +
Preference number: 6 (lower is better)
Translates to: AFVTVSMLPGTV*IIGHLPNQVSI
Trigger: TATCGAGACTTGGTTGGGCAGATGCCCTATAATTCACACAGTGCCAGGTAACATAGACACTGTAACAAAGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS GCA 72 bp ATCTTCTTCCTGGCACAACAGAGCAACTGCCCCTTTTaGCATGCTCTTATGAATGCTTCAGGCAAATGTGAT +
Preference number: 6 (lower is better)
Translates to: IFFLAQQSNCPF*HALMNASGKCD
Trigger: ATCACATTTGCCTGAAGCATTCATAAGAGCATGGCAAAAGGGGCAGTTGCTCTGTTGTGCCAGGAAGAAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000663653.1
ENST00000671138.1
CDS CCA 72 bp CAGCGTATATGCCTTTGTTACAGTGTCTATGTTACCTaGCACTGTGTGAATTATAGGGCATCTGCCCAACCA +
Preference number: 6 (lower is better)
Translates to: QRICLCYSVYVT*HCVNYRASAQP
Trigger: TGGTTGGGCAGATGCCCTATAATTCACACAGTGCCAGGTAACATAGACACTGTAACAAAGGCATATACGCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS CCA 72 bp CTCCCAAACCAATTGCCAGGAAATCGGTGTCTTCGGTaGTGTGGCCCTAGACATACATTTCTTTTAAGAGTT +
Preference number: 6 (lower is better)
Translates to: LPNQLPGNRCLR*CGPRHTFLLRV
Trigger: AACTCTTAAAAGAAATGTATGTCTAGGGCCACACCACCGAAGACACCGATTTCCTGGCAATTGGTTTGGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000666093.1
CDS GCA 72 bp AGTGAGACACAGACACATCTCCCTATAACCCACCTATaGCTTAGGCTCATTCATGGGCCTTTATCTTACTTT +
Preference number: 6 (lower is better)
Translates to: SETQTHLPITHL*LRLIHGPLSYF
Trigger: AAAGTAAGATAAAGGCCCATGAATGAGCCTAAGGCATAGGTGGGTTATAGGGAGATGTGTCTGTGTCTCACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS GCA 72 bp GTACACAATTGTTCCATCTTGATCCCTTGGTTAAGATaGTGTCTGCTAGGTTCCTCCATTGTAGAGTCACCA +
Preference number: 6 (lower is better)
Translates to: VHNCSILIPWLR*CLLGSSIVESP
Trigger: TGGTGACTCTACAATGGAGGAACCTAGCAGACAGCATCTTAACCAAGGGATCAAGATGGAACAATTGTGTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000658966.1
ENST00000667732.1
CDS GCA 72 bp TCTGAGAGCCTTAATATGTACAATGTTTTTCTGGTCTaGAGCAGTGAGGGAGAATCTCCCGACTTTCCAGAA +
Preference number: 6 (lower is better)
Translates to: SESLNMYNVFLV*SSEGESPDFPE
Trigger: TTCTGGAAAGTCGGGAGATTCTCCCTCACTGCTGCAGACCAGAAAAACATTGTACATATTAAGGCTCTCAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000666093.1
CDS CCA 72 bp AAGTTCTCTTCTACAGCTTTGAGAGCTTTGGATAACTaGAATGAAGGCATGGGGTTACCTCCATCTTCTTCC +
Preference number: 6 (lower is better)
Translates to: KFSSTALRALDN*NEGMGLPPSSS
Trigger: GGAAGAAGATGGAGGTAACCCCATGCCTTCATTCCAGTTATCCAAAGCTCTCAAAGCTGTAGAAGAGAACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000663653.1
ENST00000671138.1
CDS CCA 72 bp ACCTTCTTCCCTTTCTCTTCTGGGTCTAGCTTTTCTTaGGGTATGGCAGAGAGAAGAAAAGGGAAACTAAAG +
Preference number: 6 (lower is better)
Translates to: TFFPFSSGSSFS*GMAERRKGKLK
Trigger: CTTTAGTTTCCCTTTTCTTCTCTCTGCCATACCCCAAGAAAAGCTAGACCCAGAAGAGAAAGGGAAGAAGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS CCA 72 bp ACCTTTGGAGCAAAGCTGATGACAACTTCCCAGTGGTaGGTATATTCGTGCATTCCTTCTGTATTCTTATGG +
Preference number: 6 (lower is better)
Translates to: TFGAKLMTTSQW*VYSCIPSVFLW
Trigger: CCATAAGAATACAGAAGGAATGCACGAATATACCCACCACTGGGAAGTTGTCATCAGCTTTGCTCCAAAGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000666093.1
CDS GCA 72 bp AAGCTGATGACAACTTCCCAGTGGTGGGTATATTCGTaGATTCCTTCTGTATTCTTATGGCTGTCTCTGATT +
Preference number: 6 (lower is better)
Translates to: KLMTTSQWWVYS*IPSVFLWLSLI
Trigger: AATCAGAGACAGCCATAAGAATACAGAAGGAATGCACGAATATACCCACCACTGGGAAGTTGTCATCAGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000666093.1
CDS CCA 72 bp GCAGATGGGAACTGGATACACAGTGGATTTGCAGCATaGCTGAAGAACTTATTGGTTTGTAGCAAAATAAGC +
Preference number: 6 (lower is better)
Translates to: ADGNWIHSGFAA*LKNLLVCSKIS
Trigger: GCTTATTTTGCTACAAACCAATAAGTTCTTCAGCCATGCTGCAAATCCACTGTGTATCCAGTTCCCATCTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENST00000652681.1
ENST00000654424.1
ENST00000656248.1
ENST00000658966.1
ENST00000663653.1
ENST00000666093.1
ENST00000667732.1
ENST00000670414.1
ENST00000670640.1
ENST00000671138.1
CDS CCA 72 bp AGGTTTTCAACAGTCATCAAGAGTGGACATGGTGTCTaGGAAGATACCTGCTTAATTGACTGCTTTTGTCCA +
Preference number: 6 (lower is better)
Translates to: RFSTVIKSGHGV*EDTCLIDCFCP
Trigger: TGGACAAAAGCAGTCAATTAAGCAGGTATCTTCCCAGACACCATGTCCACTCTTGATGACTGTTGAAAACCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000656248.1
ENST00000657202.1
ENST00000666093.1
ENST00000670640.1
CDS CCA 72 bp AAGACCTTTGGAGCAAAGCTGATGACAACTTCCCAGTaGTGGGTATATTCGTGCATTCCTTCTGTATTCTTA +
Preference number: 6 (lower is better)
Translates to: KTFGAKLMTTSQ*WVYSCIPSVFL
Trigger: TAAGAATACAGAAGGAATGCACGAATATACCCACCACTGGGAAGTTGTCATCAGCTTTGCTCCAAAGGTCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000666093.1
CDS CCA 72 bp CTGATGGAGTTTTCACCAGTGACTTCAGTAAACTCTTaGGTCAACTTTCTGCCAAAAAGTACCTTGAGTCTC +
Preference number: 6 (lower is better)
Translates to: LMEFSPVTSVNS*VNFLPKSTLSL
Trigger: GAGACTCAAGGTACTTTTTGGCAGAAAGTTGACCCAAGAGTTTACTGAAGTCACTGGTGAAAACTCCATCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000666093.1
CDS CAA 72 bp GCTGATGGAGTTTTCACCAGTGACTTCAGTAAACTCTaGGGTCAACTTTCTGCCAAAAAGTACCTTGAGTCT +
Preference number: 6 (lower is better)
Translates to: ADGVFTSDFSKL*GQLSAKKYLES
Trigger: AGACTCAAGGTACTTTTTGGCAGAAAGTTGACCCAAGAGTTTACTGAAGTCACTGGTGAAAACTCCATCAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000666093.1
CDS TCA 72 bp CAAACTAGAGGGCTTTGGCCTTTTCAGTTTGGCTCTTaGCAAAGACATTTTCCATTTGTAGACGCTGTCAAA +
Preference number: 6 (lower is better)
Translates to: QTRGLWPFQFGS*QRHFPFVDAVK
Trigger: TTTGACAGCGTCTACAAATGGAAAATGTCTTTGTCAAGAGCCAAACTGAAAAGGCCAAAGCCCTCTAGTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS TCA 72 bp CAAACTAAAGGCAATTCATGGCCTTACCTCAGTTCCTaGTGGGGTTATCTAAGGTTTTCAACAGTCATCAAG +
Preference number: 6 (lower is better)
Translates to: QTKGNSWPYLSS*WGYLRFSTVIK
Trigger: CTTGATGACTGTTGAAAACCTTAGATAACCCCATCAGGAACTGAGGTAAGGCCATGAATTGCCTTTAGTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000656248.1
ENST00000657202.1
ENST00000666093.1
ENST00000670640.1
CDS TCA 72 bp GAGACCTCTCTATCTCACTTATCTAGCTATACTACGTaGAGCAGTGATTTTCAACCTTGGCTGACATTAGAC +
Preference number: 6 (lower is better)
Translates to: ETSLSHLSSYTT*SSDFQPWLTLD
Trigger: GTCTAATGTCAGCCAAGGTTGAAAATCACTGCTTCACGTAGTATAGCTAGATAAGTGAGATAGAGAGGTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000666093.1
CDS CCA 72 bp GATGCCTTTCAAACAGACTCCTATGTCCTTTTCACATaGTCCCATCATTCTTTGAGCACGTTCTTACTTTCT +
Preference number: 6 (lower is better)
Translates to: DAFQTDSYVLFT*SHHSLSTFLLS
Trigger: AGAAAGTAAGAACGTGCTCAAAGAATGATGGGACCATGTGAAAAGGACATAGGAGTCTGTTTGAAAGGCATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000652681.1
ENST00000658966.1
ENST00000667732.1
CDS CCA 72 bp GTCTTTGAGAAGACTGAGGGGGAAGGTAAAAGTATGTaGACTTCTCTTATTTACACACCTTCTTCCCTTTCT +
Preference number: 6 (lower is better)
Translates to: VFEKTEGEGKSM*TSLIYTPSSLS
Trigger: AGAAAGGGAAGAAGGTGTGTAAATAAGAGAAGTCCACATACTTTTACCTTCCCCCTCAGTCTTCTCAAAGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS TCA 72 bp ATGGTCCCATCATTCTTTGAGCACGTTCTTACTTTCTaGCACAGAAAGCTTCTCCAGGTTCATCTTGTATTT +
Preference number: 6 (lower is better)
Translates to: MVPSFFEHVLTF*HRKLLQVHLVF
Trigger: AAATACAAGATGAACCTGGAGAAGCTTTCTGTGTCAGAAAGTAAGAACGTGCTCAAAGAATGATGGGACCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000652681.1
ENST00000658966.1
ENST00000667732.1
CDS CCA 72 bp CATTTTTATCCTCAGAGTTATCCTATATTTGGCCAGTaGGATGCCTTTCAAACAGACTCCTATGTCCTTTTC +
Preference number: 6 (lower is better)
Translates to: HFYPQSYPIFGQ*DAFQTDSYVLF
Trigger: GAAAAGGACATAGGAGTCTGTTTGAAAGGCATCCCACTGGCCAAATATAGGATAACTCTGAGGATAAAAATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000652681.1
ENST00000658966.1
ENST00000667732.1
CDS CAA 72 bp AGTGCTTGTATATTACCCCCGGCCAATTGTAAATGCTaGGAAAGGAAGCCTTATCGTATATGCCTTTGTTTA +
Preference number: 6 (lower is better)
Translates to: SACILPPANCKC*ERKPYRICLCL
Trigger: TAAACAAAGGCATATACGATAAGGCTTCCTTTCCAAGCATTTACAATTGGCCGGGGGTAATATACAAGCACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS CAA 72 bp GTAAACTCTTGGGTCAACTTTCTGCCAAAAAGTACCTaGAGTCTCTTATGGGAAAACGTGTTAGGTAAAGAG +
Preference number: 6 (lower is better)
Translates to: VNSWVNFLPKST*SLLWENVLGKE
Trigger: CTCTTTACCTAACACGTTTTCCCATAAGAGACTCAAGGTACTTTTTGGCAGAAAGTTGACCCAAGAGTTTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000666093.1
CDS TCA 72 bp TTTAATATAGATAAACTTCTAGTGAGCAGCTTCTTTTaGCTGTGTACATCCTGCTTGATTCACAGGGGGCAA +
Preference number: 6 (lower is better)
Translates to: FNIDKLLVSSFF*LCTSCLIHRGQ
Trigger: TTGCCCCCTGTGAATCAAGCAGGATGTACACAGTCAAAAGAAGCTGCTCACTAGAAGTTTATCTATATTAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000417654.1
CDS TCA 72 bp AAGAGAGCACTCACAATAAGCAAACGTTTTGAGATCTaGATAGTGTTCCTGGCTTACTTGGGGTTATTTCTA +
Preference number: 6 (lower is better)
Translates to: KRALTISKRFEI*IVFLAYLGLFL
Trigger: TAGAAATAACCCCAAGTAAGCCAGGAACACTATTCAGATCTCAAAACGTTTGCTTATTGTGAGTGCTCTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000666093.1
CDS TCA 72 bp TTAAGGATAATTCTGTTTGGGTGTGATCAGACAAGATaGCCTCTTTGCCCACTAGATGATAATTCTGTGAGA +
Preference number: 6 (lower is better)
Translates to: LRIILFGCDQTR*PLCPLDDNSVR
Trigger: TCTCACAGAATTATCATCTAGTGGGCAAAGAGGTCATCTTGTCTGATCACACCCAAACAGAATTATCCTTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000666093.1
CDS TCA 72 bp AATTCTTCCCAATCAGTTGATTCACTATCGTTCAGGTaGTCTGCAGTTGCAGATAAGCGTGGTATACAAATT +
Preference number: 6 (lower is better)
Translates to: NSSQSVDSLSFR*SAVADKRGIQI
Trigger: AATTTGTATACCACGCTTATCTGCAACTGCAGATCACCTGAACGATAGTGAATCAACTGATTGGGAAGAATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000670414.1
CDS CAA 72 bp TTTACTGACATTTTTATCCTCAGAGTTATCCTATATTaGGCCAGTGGGATGCCTTTCAAACAGACTCCTATG +
Preference number: 6 (lower is better)
Translates to: FTDIFILRVILY*ASGMPFKQTPM
Trigger: CATAGGAGTCTGTTTGAAAGGCATCCCACTGGCCAAATATAGGATAACTCTGAGGATAAAAATGTCAGTAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000652681.1
ENST00000658966.1
ENST00000667732.1
CDS TCA 72 bp TTTCTTTCCCATCACATAATGGCATCTTTGAAGCTGTaGTCCCAAATTTTATCTAACGCTGTCTTCTTTTCC +
Preference number: 6 (lower is better)
Translates to: FLSHHIMASLKL*SQILSNAVFFS
Trigger: GGAAAAGAAGACAGCGTTAGATAAAATTTGGGATCACAGCTTCAAAGATGCCATTATGTGATGGGAAAGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS TCA 72 bp GGAAATAGCACCAAATTAGAGCATGGCCCATTACTATaGAAATATCAAGGCATTCTGGGTCTAACTATATTC +
Preference number: 6 (lower is better)
Translates to: GNSTKLEHGPLL*KYQGILGLTIF
Trigger: GAATATAGTTAGACCCAGAATGCCTTGATATTTTCATAGTAATGGGCCATGCTCTAATTTGGTGCTATTTCC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000656248.1
ENST00000666093.1
ENST00000670640.1
CDS GCA 72 bp TCACATAAAAACACAGAAATAGGAACTCTTTTACACTaGTGGTGGGAGTGTAAATTAGTTCAACCATTGTGG +
Preference number: 6 (lower is better)
Translates to: SHKNTEIGTLLH*WWECKLVQPLW
Trigger: CCACAATGGTTGAACTAATTTACACTCCCACCAGCAGTGTAAAAGAGTTCCTATTTCTGTGTTTTTATGTGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS GCA 72 bp TGGAATTTGATTTTGGGTTATTTTAACGAGTTAGCCTaGCACGGTTTCATGGATGCTAATAGAAGATACAAG +
Preference number: 6 (lower is better)
Translates to: WNLILGYFNELA*HGFMDANRRYK
Trigger: CTTGTATCTTCTATTAGCATCCATGAAACCGTGGCAGGCTAACTCGTTAAAATAACCCAAAATCAAATTCCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000667732.1
CDS CCA 72 bp CATAAAAACACAGAAATAGGAACTCTTTTACACTGCTaGTGGGAGTGTAAATTAGTTCAACCATTGTGGAAG +
Preference number: 6 (lower is better)
Translates to: HKNTEIGTLLHC*WECKLVQPLWK
Trigger: CTTCCACAATGGTTGAACTAATTTACACTCCCACCAGCAGTGTAAAAGAGTTCCTATTTCTGTGTTTTTATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS CCA 72 bp GATAGAAAATTAGTTGGGTGGGAATTGCTTTTTATGTaGCTCCAAGAAACCTGGAACATGTGTGTATTTATC +
Preference number: 6 (lower is better)
Translates to: DRKLVGWELLFM*LQETWNMCVFI
Trigger: GATAAATACACACATGTTCCAGGTTTCTTGGAGCCACATAAAAAGCAATTCCCACCCAACTAATTTTCTATC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000666093.1
CDS CAA 90 bp GATAACTTAAGTGCTTGTATATTACCCCCGGCCAATTGTAAATGCTaGGAAAGGAAGCCTTATCGTATATGCCTTTGTTTATTTGTGTTT +
Preference number: 6 (lower is better)
Translates to: DNLSACILPPANCKC*ERKPYRICLCLFVF
Trigger: AAACACAAATAAACAAAGGCATATACGATAAGGCTTCCTTTCCAAGCATTTACAATTGGCCGGGGGTAATATACAAGCACTTAAGTTATC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000663653.1
CDS CAA 90 bp GATCGACCCATGCTGCTTTTATTAATTGAAGGTTTAGTCTCACAATaGACTGTTAGCTCCTCAATTAAGTATAGGGAAATAGCACCAAAT +
Preference number: 6 (lower is better)
Translates to: DRPMLLLLIEGLVSQ*TVSSSIKYREIAPN
Trigger: ATTTGGTGCTATTTCCCTATACTTAATTGAGGAGCTAACAGTCAATTGTGAGACTAAACCTTCAATTAATAAAAGCAGCATGGGTCGATC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000656248.1
ENST00000666093.1
CDS TCA 72 bp TTTGACCTGGAACTGTCTTTTATGACCTTCACATTTTaGAGAGCACAGATCACTTATTGCAAAGAATATTGT +
Preference number: 6 (lower is better)
Translates to: FDLELSFMTFTF*RAQITYCKEYC
Trigger: ACAATATTCTTTGCAATAAGTGATCTGTGCTCTTCAAAATGTGAAGGTCATAAAAGACAGTTCCAGGTCAAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000658966.1
ENST00000667732.1