RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC02838 (Homo sapiens)

Ensembl gene IDs: ENSG00000285536

Ensembl transcript IDs: ENST00000649656.1

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp AGAGCAGCCCAAGTTCTGTTCCAATCTCTCCTAGAATTGGATGTCTaGCGATGTTTGACAAACAGGAGAACTGTTTCCAAGGTTCCTGAG +
Preference number: 5 (lower is better)
Translates to: RAAQVLFQSLLELDV*RCLTNRRTVSKVPE
Trigger: CTCAGGAACCTTGGAAACAGTTCTCCTGTTTGTCAAACATCGCCAGACATCCAATTCTAGGAGAGATTGGAACAGAACTTGGGCTGCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000649656.1
CDS CCA 90 bp CATCAAGCAGTGCAGGCTTTATTCAATGGCCATGGACTTAAGAAGTaGGAGCTTGACTCACAGATTAACTTCTCAATTAATGAGAGACAG +
Preference number: 5 (lower is better)
Translates to: HQAVQALFNGHGLKK*ELDSQINFSINERQ
Trigger: CTGTCTCTCATTAATTGAGAAGTTAATCTGTGAGTCAAGCTCCCACTTCTTAAGTCCATGGCCATTGAATAAAGCCTGCACTGCTTGATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000649656.1
CDS CCA 90 bp GGTGATTATAAACTGTCATGGCACTGGTGGGAGTGTCATTTAGTATaGAAAATAAATTATAATGAAGTTGGAGGTTCTTCAAAGGCGAAG +
Preference number: 5 (lower is better)
Translates to: GDYKLSWHWWECHLV*KINYNEVGGSSKAK
Trigger: CTTCGCCTTTGAAGAACCTCCAACTTCATTATAATTTATTTTCCATACTAAATGACACTCCCACCAGTGCCATGACAGTTTATAATCACC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000649656.1
CDS CCA 90 bp TCTTCTGGTCATTGTCATGGTGATTATAAACTGTCATGGCACTGGTaGGAGTGTCATTTAGTATGGAAAATAAATTATAATGAAGTTGGA +
Preference number: 5 (lower is better)
Translates to: SSGHCHGDYKLSWHW*ECHLVWKINYNEVG
Trigger: TCCAACTTCATTATAATTTATTTTCCATACTAAATGACACTCCCACCAGTGCCATGACAGTTTATAATCACCATGACAATGACCAGAAGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000649656.1
CDS GCA 72 bp CTGTCTCCTAAAGAGTTCCCTGGGGAGAACACAGCGTaGCATGCCACAGGGGGCCACTCGTGGGAGCACCAG +
Preference number: 6 (lower is better)
Translates to: LSPKEFPGENTA*HATGGHSWEHQ
Trigger: CTGGTGCTCCCACGAGTGGCCCCCTGTGGCATGGCACGCTGTGTTCTCCCCAGGGAACTCTTTAGGAGACAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000649656.1
CDS TCA 72 bp TTTTGTGGTTTCTGGCTCCGAGGCACATATGGCGACTaGATAGCGGCCAAGGGTCTGAGAGACAAACAAGGA +
Preference number: 6 (lower is better)
Translates to: FCGFWLRGTYGD*IAAKGLRDKQG
Trigger: TCCTTGTTTGTCTCTCAGACCCTTGGCCGCTATTCAGTCGCCATATGTGCCTCGGAGCCAGAAACCACAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000649656.1
CDS TCA 72 bp GCGGCCAAGGGTCTGAGAGACAAACAAGGAGGTAATTaGGGATCGGACTTAATTGACCCCACAAGAAAAGGG +
Preference number: 6 (lower is better)
Translates to: AAKGLRDKQGGN*GSDLIDPTRKG
Trigger: CCCTTTTCTTGTGGGGTCAATTAAGTCCGATCCTCAATTACCTCCTTGTTTGTCTCTCAGACCCTTGGCCGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000649656.1
CDS TCA 72 bp TCAGTCTTAACTGGTTTGGTCACCAGGGGGAACTTCTaGCCTCAGACATCCTGTCTCCTAAAGAGTTCCCTG +
Preference number: 6 (lower is better)
Translates to: SVLTGLVTRGNF*PQTSCLLKSSL
Trigger: CAGGGAACTCTTTAGGAGACAGGATGTCTGAGGTCAGAAGTTCCCCCTGGTGACCAAACCAGTTAAGACTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000649656.1
CDS CCA 72 bp AAGGGGAGGAGTATTCTTGTCTTTTCTGGGAATGGGTaGAGAATTCCTCAGAACCGGAGTTGTGGTCTTCCT +
Preference number: 6 (lower is better)
Translates to: KGRSILVFSGNG*RIPQNRSCGLP
Trigger: AGGAAGACCACAACTCCGGTTCTGAGGAATTCTCCACCCATTCCCAGAAAAGACAAGAATACTCCTCCCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000649656.1
CDS CCA 72 bp AAACAAGGGGAGGAGTATTCTTGTCTTTTCTGGGAATaGGTGGAGAATTCCTCAGAACCGGAGTTGTGGTCT +
Preference number: 6 (lower is better)
Translates to: KQGEEYSCLFWE*VENSSEPELWS
Trigger: AGACCACAACTCCGGTTCTGAGGAATTCTCCACCCATTCCCAGAAAAGACAAGAATACTCCTCCCCTTGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000649656.1
CDS CAA 72 bp AGAGCAGCCCAAGTTCTGTTCCAATCTCTCCTAGAATaGGATGTCTGGCGATGTTTGACAAACAGGAGAACT +
Preference number: 6 (lower is better)
Translates to: RAAQVLFQSLLE*DVWRCLTNRRT
Trigger: AGTTCTCCTGTTTGTCAAACATCGCCAGACATCCAATTCTAGGAGAGATTGGAACAGAACTTGGGCTGCTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000649656.1
CDS CAA 72 bp TTCTGGGAATGGGTGGAGAATTCCTCAGAACCGGAGTaGTGGTCTTCCTTTTTGTCCTTTCATAATTTCTTC +
Preference number: 6 (lower is better)
Translates to: FWEWVENSSEPE*WSSFLSFHNFF
Trigger: GAAGAAATTATGAAAGGACAAAAAGGAAGACCACAACTCCGGTTCTGAGGAATTCTCCACCCATTCCCAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000649656.1
CDS CAA 90 bp TCTTGTCTTTTCTGGGAATGGGTGGAGAATTCCTCAGAACCGGAGTaGTGGTCTTCCTTTTTGTCCTTTCATAATTTCTTCTGGTCATTG +
Preference number: 6 (lower is better)
Translates to: SCLFWEWVENSSEPE*WSSFLSFHNFFWSL
Trigger: CAATGACCAGAAGAAATTATGAAAGGACAAAAAGGAAGACCACAACTCCGGTTCTGAGGAATTCTCCACCCATTCCCAGAAAAGACAAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000649656.1
CDS CAA 90 bp CAGTGCAGGCTTTATTCAATGGCCATGGACTTAAGAAGTGGGAGCTaGACTCACAGATTAACTTCTCAATTAATGAGAGACAGGAAGTCA +
Preference number: 6 (lower is better)
Translates to: QCRLYSMAMDLRSGS*THRLTSQLMRDRKS
Trigger: TGACTTCCTGTCTCTCATTAATTGAGAAGTTAATCTGTGAGTCAAGCTCCCACTTCTTAAGTCCATGGCCATTGAATAAAGCCTGCACTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000649656.1
CDS TCA 72 bp AGAATAACTATAGAATGTGCTAACAATGCAACATTCTaGGATAAAGAGGGGCTCTCCAGAGCAGCCCAAGTT +
Preference number: 6 (lower is better)
Translates to: RITIECANNATF*DKEGLSRAAQV
Trigger: AACTTGGGCTGCTCTGGAGAGCCCCTCTTTATCTCAGAATGTTGCATTGTTAGCACATTCTATAGTTATTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000649656.1
CDS CAA 72 bp GGAAGTCACAGATATGGGACATCTTTAATGAAGGGTTaGGGCATTAAAAACAAGGGGAGGAGTATTCTTGTC +
Preference number: 6 (lower is better)
Translates to: GSHRYGTSLMKG*GIKNKGRSILV
Trigger: GACAAGAATACTCCTCCCCTTGTTTTTAATGCCCAAACCCTTCATTAAAGATGTCCCATATCTGTGACTTCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000649656.1
CDS CCA 72 bp GTGCAGGCTTTATTCAATGGCCATGGACTTAAGAAGTaGGAGCTTGACTCACAGATTAACTTCTCAATTAAT +
Preference number: 6 (lower is better)
Translates to: VQALFNGHGLKK*ELDSQINFSIN
Trigger: ATTAATTGAGAAGTTAATCTGTGAGTCAAGCTCCCACTTCTTAAGTCCATGGCCATTGAATAAAGCCTGCAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000649656.1
CDS CCA 72 bp TCTTCTGGTCATTGTCATGGTGATTATAAACTGTCATaGCACTGGTGGGAGTGTCATTTAGTATGGAAAATA +
Preference number: 6 (lower is better)
Translates to: SSGHCHGDYKLS*HWWECHLVWKI
Trigger: TATTTTCCATACTAAATGACACTCCCACCAGTGCCATGACAGTTTATAATCACCATGACAATGACCAGAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000649656.1
CDS CAA 72 bp CTTTATTCAATGGCCATGGACTTAAGAAGTGGGAGCTaGACTCACAGATTAACTTCTCAATTAATGAGAGAC +
Preference number: 6 (lower is better)
Translates to: LYSMAMDLRSGS*THRLTSQLMRD
Trigger: GTCTCTCATTAATTGAGAAGTTAATCTGTGAGTCAAGCTCCCACTTCTTAAGTCCATGGCCATTGAATAAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000649656.1
CDS CCA 72 bp GGTCATTGTCATGGTGATTATAAACTGTCATGGCACTaGTGGGAGTGTCATTTAGTATGGAAAATAAATTAT +
Preference number: 6 (lower is better)
Translates to: GHCHGDYKLSWH*WECHLVWKINY
Trigger: ATAATTTATTTTCCATACTAAATGACACTCCCACCAGTGCCATGACAGTTTATAATCACCATGACAATGACC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000649656.1