Pregenerated sensors for LINC02836 (Homo sapiens)
Ensembl gene IDs: ENSG00000237567Ensembl transcript IDs: ENST00000423489.1, ENST00000654953.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | ATCAATGGAAATAAAGGACAGGAAGGAGCAATCCTTGAGGGTCGATaGAGGCTTCATGGAGCCAGTGTTTCCTCCTCTTTCAAGCCTCAG | + |
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Preference number: 5 (lower is better) Translates to: INGNKGQEGAILEGR*RLHGASVSSSFKPQ Trigger: CTGAGGCTTGAAAGAGGAGGAAACACTGGCTCCATGAAGCCTTCATCGACCCTCAAGGATTGCTCCTTCCTGTCCTTTATTTCCATTGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000423489.1 ENST00000654953.1 |
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| CDS TCA 72 bp | GCTTGCACTGCTTCTTGTTGGGTTGTGAGGTCAGGCTaGTCTGAGCTCACCTCCACCAAGGGTGACCTGGGA | + |
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Preference number: 6 (lower is better) Translates to: ACTASCWVVRSG*SELTSTKGDLG Trigger: TCCCAGGTCACCCTTGGTGGAGGTGAGCTCAGATCAGCCTGACCTCACAACCCAACAAGAAGCAGTGCAAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000423489.1 |
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| CDS CAA 72 bp | AGGCACCCAGAGACTAGCGACAGTGGGAAGCTGTTCTaGTACTTCGGCCTGGAAATCAGTTACAGACAGCTT | + |
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Preference number: 6 (lower is better) Translates to: RHPETSDSGKLF*YFGLEISYRQL Trigger: AAGCTGTCTGTAACTGATTTCCAGGCCGAAGTACAAGAACAGCTTCCCACTGTCGCTAGTCTCTGGGTGCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000423489.1 ENST00000654953.1 |
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| CDS CAA 90 bp | CCTCCACCAAGGGTGACCTGGGACAAGTTCTCTTCCACTCTGAGTTaGTCTTCTCACAAGAAAACAGGTAATAAACTCCGCGCCTACAGG | + |
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Preference number: 6 (lower is better) Translates to: PPPRVTWDKFSSTLS*SSHKKTGNKLRAYR Trigger: CCTGTAGGCGCGGAGTTTATTACCTGTTTTCTTGTGAGAAGACAAACTCAGAGTGGAAGAGAACTTGTCCCAGGTCACCCTTGGTGGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000423489.1 |
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| CDS TCA 72 bp | AATAAAGGACAGGAAGGAGCAATCCTTGAGGGTCGATaGAGGCTTCATGGAGCCAGTGTTTCCTCCTCTTTC | + |
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Preference number: 6 (lower is better) Translates to: NKGQEGAILEGR*RLHGASVSSSF Trigger: GAAAGAGGAGGAAACACTGGCTCCATGAAGCCTTCATCGACCCTCAAGGATTGCTCCTTCCTGTCCTTTATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000423489.1 ENST00000654953.1 |
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| CDS CAA 72 bp | AGGGTGACCTGGGACAAGTTCTCTTCCACTCTGAGTTaGTCTTCTCACAAGAAAACAGGTAATAAACTCCGC | + |
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Preference number: 6 (lower is better) Translates to: RVTWDKFSSTLS*SSHKKTGNKLR Trigger: GCGGAGTTTATTACCTGTTTTCTTGTGAGAAGACAAACTCAGAGTGGAAGAGAACTTGTCCCAGGTCACCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000423489.1 |
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| CDS CAA 90 bp | AGCTTTTTCTTATCAATGGAAATAAAGGACAGGAAGGAGCAATCCTaGAGGGTCGATGAAGGCTTCATGGAGCCAGTGTTTCCTCCTCTT | + |
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Preference number: 6 (lower is better) Translates to: SFFLSMEIKDRKEQS*RVDEGFMEPVFPPL Trigger: AAGAGGAGGAAACACTGGCTCCATGAAGCCTTCATCGACCCTCAAGGATTGCTCCTTCCTGTCCTTTATTTCCATTGATAAGAAAAAGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000423489.1 ENST00000654953.1 |
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| CDS CCA 72 bp | TTTCAAGCCTCAGCACAAGCATTTCCCTCTTCTGTATaGATTTCTCTAGGCAGATGTAGCTGTTCCTTTCTC | + |
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Preference number: 6 (lower is better) Translates to: FQASAQAFPSSV*ISLGRCSCSFL Trigger: GAGAAAGGAACAGCTACATCTGCCTAGAGAAATCCATACAGAAGAGGGAAATGCTTGTGCTGAGGCTTGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000423489.1 ENST00000654953.1 |
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| CDS TCA 72 bp | GTCTTCATGCCTGAGGTTTCTTCTTGTCAACTTGGATaGATGGACTATAGAATGTACACATTTCCTGCTTGC | + |
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Preference number: 6 (lower is better) Translates to: VFMPEVSSCQLG*MDYRMYTFPAC Trigger: GCAAGCAGGAAATGTGTACATTCTATAGTCCATTCATCCAAGTTGACAAGAAGAAACCTCAGGCATGAAGAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000423489.1 ENST00000654953.1 |
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| CDS CCA 72 bp | TCATGCCTGAGGTTTCTTCTTGTCAACTTGGATGAATaGACTATAGAATGTACACATTTCCTGCTTGCACTG | + |
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Preference number: 6 (lower is better) Translates to: SCLRFLLVNLDE*TIECTHFLLAL Trigger: CAGTGCAAGCAGGAAATGTGTACATTCTATAGTCCATTCATCCAAGTTGACAAGAAGAAACCTCAGGCATGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000423489.1 |
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| CDS CCA 72 bp | GGTATATTTGAGATGACTAGCATTTTCCAGCATAGATaGAAAATCAAAGCTGAATGTTGCTTGGGAGTATTC | + |
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Preference number: 6 (lower is better) Translates to: GIFEMTSIFQHR*KIKAECCLGVF Trigger: GAATACTCCCAAGCAACATTCAGCTTTGATTTTCCATCTATGCTGGAAAATGCTAGTCATCTCAAATATACC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000654953.1 |
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