Pregenerated sensors for LINC02833 (Homo sapiens)
Ensembl gene IDs: ENSG00000258742Ensembl transcript IDs: ENST00000553485.2, ENST00000554653.5, ENST00000556466.6, ENST00000557689.1, ENST00000625500.2, ENST00000627536.2, ENST00000629677.1, ENST00000630284.1
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TCCTTGACTTCCATTTCTCTGGGTGGTGGGTGCAGCAGTTTGGGCTaGAGGAAGCTGGGGCGGTTCCATCCAGTGGAGCTGTGGTGGGAG | + |
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Preference number: 5 (lower is better) Translates to: SLTSISLGGGCSSLG*RKLGRFHPVELWWE Trigger: CTCCCACCACAGCTCCACTGGATGGAACCGCCCCAGCTTCCTCCAGCCCAAACTGCTGCACCCACCACCCAGAGAAATGGAAGTCAAGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000553485.2 ENST00000556466.6 ENST00000557689.1 ENST00000630284.1 |
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| CDS TCA 90 bp | CCCCTGAAGTTGCTTCAGAAGGGCTGCCTTGGACTGCTGAGTCCTTaGCTTCCATTTCTCTGGGTGGTGGGTGCAGCAGTTTGGGCTGGA | + |
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Preference number: 5 (lower is better) Translates to: PLKLLQKGCLGLLSP*LPFLWVVGAAVWAG Trigger: TCCAGCCCAAACTGCTGCACCCACCACCCAGAGAAATGGAAGTCAAGGACTCAGCAGTCCAAGGCAGCCCTTCTGAAGCAACTTCAGGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000553485.2 ENST00000556466.6 ENST00000557689.1 ENST00000630284.1 |
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| CDS GCA 90 bp | TGGAGTCCTTTCAGAGATCCTGATCTTCCTATCCACCCCCACACCTaGCCTTTTGATGTTCTCTTAGTGATGGGAGTGGGTCCTGCCCAT | + |
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Preference number: 5 (lower is better) Translates to: WSPFRDPDLPIHPHT*PFDVLLVMGVGPAH Trigger: ATGGGCAGGACCCACTCCCATCACTAAGAGAACATCAAAAGGGCAGGTGTGGGGGTGGATAGGAAGATCAGGATCTCTGAAAGGACTCCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000556466.6 ENST00000625500.2 |
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| CDS TCA 90 bp | GCTCCTTATGCTCTGAGTCAGCTTCTGGGTGGACTGGTTGAGTCATaGATCATGGGTCCAGGTGGAGTCCTTTCAGAGATCCTGATCTTC | + |
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Preference number: 5 (lower is better) Translates to: APYALSQLLGGLVES*IMGPGGVLSEILIF Trigger: GAAGATCAGGATCTCTGAAAGGACTCCACCTGGACCCATGATTCATGACTCAACCAGTCCACCCAGAAGCTGACTCAGAGCATAAGGAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000556466.6 ENST00000625500.2 |
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| CDS GCA 90 bp | ACTTACCCTTTCAGAGATCCTGATCTTCCTATCCACCCCCACACCTaGCCTTTTGATGTTCTCTTAGTGATGGGAGTGGGTCCTGCCCAT | + |
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Preference number: 5 (lower is better) Translates to: TYPFRDPDLPIHPHT*PFDVLLVMGVGPAH Trigger: ATGGGCAGGACCCACTCCCATCACTAAGAGAACATCAAAAGGGCAGGTGTGGGGGTGGATAGGAAGATCAGGATCTCTGAAAGGGTAAGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000557689.1 ENST00000630284.1 |
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| CDS GCA 90 bp | AAATTTCCTTTCAGAGATCCTGATCTTCCTATCCACCCCCACACCTaGCCTTTTGATGTTCTCTTAGTGATGGGAGTGGGTCCTGCCCAT | + |
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Preference number: 5 (lower is better) Translates to: KFPFRDPDLPIHPHT*PFDVLLVMGVGPAH Trigger: ATGGGCAGGACCCACTCCCATCACTAAGAGAACATCAAAAGGGCAGGTGTGGGGGTGGATAGGAAGATCAGGATCTCTGAAAGGAAATTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000553485.2 ENST00000554653.5 ENST00000627536.2 ENST00000629677.1 |
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| CDS TCA 90 bp | CCTGACCAGTTCTTCTTGCCAACTGCACAGATAGAGCTAATTTACTaGGATAGCGGTATGGCAGTAGAGAAAGAGTTTAATAAATACAGA | + |
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Preference number: 5 (lower is better) Translates to: PDQFFLPTAQIELIY*DSGMAVEKEFNKYR Trigger: TCTGTATTTATTAAACTCTTTCTCTACTGCCATACCGCTATCTCAGTAAATTAGCTCTATCTGTGCAGTTGGCAAGAAGAACTGGTCAGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000553485.2 ENST00000557689.1 ENST00000630284.1 |
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| CDS TCA 90 bp | CCATTGTTTTGTTTAACAATGCCTATCTGTAGTGTTTTAACCACCTaGCCAGTTCTTCTTGCCAACTGCACAGATAGAGCTAATTTACTG | + |
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Preference number: 5 (lower is better) Translates to: PLFCLTMPICSVLTT*PVLLANCTDRANLL Trigger: CAGTAAATTAGCTCTATCTGTGCAGTTGGCAAGAAGAACTGGTCAGGTGGTTAAAACACTACAGATAGGCATTGTTAAACAAAACAATGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000553485.2 ENST00000557689.1 ENST00000630284.1 |
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| CDS CCA 90 bp | AAAAGACCAATCTTAGGTTCTACAATAGTGATGTTGAGCAATGACTaGTTATCATCTAACTATGCAGACATTTTAGCAGAATTCAGGCCC | + |
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Preference number: 5 (lower is better) Translates to: KRPILGSTIVMLSND*LSSNYADILAEFRP Trigger: GGGCCTGAATTCTGCTAAAATGTCTGCATAGTTAGATGATAACCAGTCATTGCTCAACATCACTATTGTAGAACCTAAGATTGGTCTTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000557689.1 ENST00000630284.1 |
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| CDS CAA 90 bp | GCCCCTGAAGTTGCTTCAGAAGGGCTGCCTTGGACTGCTGAGTCCTaGACTTCCATTTCTCTGGGTGGTGGGTGCAGCAGTTTGGGCTGG | + |
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Preference number: 6 (lower is better) Translates to: APEVASEGLPWTAES*TSISLGGGCSSLGW Trigger: CCAGCCCAAACTGCTGCACCCACCACCCAGAGAAATGGAAGTCAAGGACTCAGCAGTCCAAGGCAGCCCTTCTGAAGCAACTTCAGGGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000553485.2 ENST00000556466.6 ENST00000557689.1 ENST00000630284.1 |
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| CDS CCA 72 bp | GTAGCTGAGGCAGGATTGGAACCTGGCTCTGATAACTaGCTTCCTTCCCCTGGGGCTGCAGGAGCATCCTTG | + |
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Preference number: 6 (lower is better) Translates to: VAEAGLEPGSDN*LPSPGAAGASL Trigger: CAAGGATGCTCCTGCAGCCCCAGGGGAAGGAAGCCAGTTATCAGAGCCAGGTTCCAATCCTGCCTCAGCTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000557689.1 ENST00000630284.1 |
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| CDS TCA 72 bp | CTCCCCAGGTTTGCTTGGCCTACGTTCGGGAAAGAGTaGGGACAGCCAGCCTGTGGGGCTAGAAATAAGACG | + |
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Preference number: 6 (lower is better) Translates to: LPRFAWPTFGKE*GQPACGARNKT Trigger: CGTCTTATTTCTAGCCCCACAGGCTGGCTGTCCTCACTCTTTCCCGAACGTAGGCCAAGCAAACCTGGGGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000557689.1 ENST00000630284.1 |
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| CDS CCA 72 bp | TGGAGGAAGCTGGGGCGGTTCCATCCAGTGGAGCTGTaGTGGGAGATTCATTACCTAGAAGCACGAGGTTCC | + |
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Preference number: 6 (lower is better) Translates to: WRKLGRFHPVEL*WEIHYLEARGS Trigger: GGAACCTCGTGCTTCTAGGTAATGAATCTCCCACCACAGCTCCACTGGATGGAACCGCCCCAGCTTCCTCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000553485.2 ENST00000556466.6 ENST00000557689.1 ENST00000630284.1 |
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| CDS CAA 72 bp | GTTGCTTCAGAAGGGCTGCCTTGGACTGCTGAGTCCTaGACTTCCATTTCTCTGGGTGGTGGGTGCAGCAGT | + |
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Preference number: 6 (lower is better) Translates to: VASEGLPWTAES*TSISLGGGCSS Trigger: ACTGCTGCACCCACCACCCAGAGAAATGGAAGTCAAGGACTCAGCAGTCCAAGGCAGCCCTTCTGAAGCAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000553485.2 ENST00000556466.6 ENST00000557689.1 ENST00000630284.1 |
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| CDS TCA 72 bp | TTGCTTCAGAAGGGCTGCCTTGGACTGCTGAGTCCTTaGCTTCCATTTCTCTGGGTGGTGGGTGCAGCAGTT | + |
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Preference number: 6 (lower is better) Translates to: LLQKGCLGLLSP*LPFLWVVGAAV Trigger: AACTGCTGCACCCACCACCCAGAGAAATGGAAGTCAAGGACTCAGCAGTCCAAGGCAGCCCTTCTGAAGCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000553485.2 ENST00000556466.6 ENST00000557689.1 ENST00000630284.1 |
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| CDS CCA 72 bp | GTCAGCTTCTGGGTGGACTGGTTGAGTCATGAATCATaGGTCCAGGTGGAGTCTGTAGGTTACCACAATGCA | + |
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Preference number: 6 (lower is better) Translates to: VSFWVDWLSHES*VQVESVGYHNA Trigger: TGCATTGTGGTAACCTACAGACTCCACCTGGACCCATGATTCATGACTCAACCAGTCCACCCAGAAGCTGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000553485.2 ENST00000554653.5 ENST00000557689.1 ENST00000627536.2 ENST00000629677.1 ENST00000630284.1 |
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| CDS GCA 72 bp | TTCAGAGATCCTGATCTTCCTATCCACCCCCACACCTaGCCTTTTGATGTTCTCTTAGTGATGGGAGTGGGT | + |
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Preference number: 6 (lower is better) Translates to: FRDPDLPIHPHT*PFDVLLVMGVG Trigger: ACCCACTCCCATCACTAAGAGAACATCAAAAGGGCAGGTGTGGGGGTGGATAGGAAGATCAGGATCTCTGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 8 transcripts: ENST00000553485.2 ENST00000554653.5 ENST00000556466.6 ENST00000557689.1 ENST00000625500.2 ENST00000627536.2 ENST00000629677.1 ENST00000630284.1 |
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| CDS CAA 72 bp | TCAAAGTTAAACTATAAACTAAGTTCCTCCCCAGGTTaGCTTGGCCTACGTTCGGGAAAGAGTGAGGACAGC | + |
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Preference number: 6 (lower is better) Translates to: SKLNYKLSSSPG*LGLRSGKSEDS Trigger: GCTGTCCTCACTCTTTCCCGAACGTAGGCCAAGCAAACCTGGGGAGGAACTTAGTTTATAGTTTAACTTTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000557689.1 ENST00000630284.1 |
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| CDS TCA 72 bp | TTCTTCTTGCCAACTGCACAGATAGAGCTAATTTACTaGGATAGCGGTATGGCAGTAGAGAAAGAGTTTAAT | + |
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Preference number: 6 (lower is better) Translates to: FFLPTAQIELIY*DSGMAVEKEFN Trigger: ATTAAACTCTTTCTCTACTGCCATACCGCTATCTCAGTAAATTAGCTCTATCTGTGCAGTTGGCAAGAAGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000553485.2 ENST00000557689.1 ENST00000630284.1 |
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| CDS CCA 72 bp | ATCTTAGGTTCTACAATAGTGATGTTGAGCAATGACTaGTTATCATCTAACTATGCAGACATTTTAGCAGAA | + |
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Preference number: 6 (lower is better) Translates to: ILGSTIVMLSND*LSSNYADILAE Trigger: TTCTGCTAAAATGTCTGCATAGTTAGATGATAACCAGTCATTGCTCAACATCACTATTGTAGAACCTAAGAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000557689.1 ENST00000630284.1 |
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