Pregenerated sensors for LINC02828 (Homo sapiens)
Ensembl gene IDs: ENSG00000224164Ensembl transcript IDs: ENST00000423504.2, ENST00000453179.1, ENST00000665572.1, ENST00000668439.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCAGCTGTCCCTGCTCGGGACCCTTCGTCAACTCTCCTTTCTACTTaGCTCTTGAATCTGGGCATTCTAAATGGCCCCATCTCCATCCTT | + |
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Preference number: 5 (lower is better) Translates to: PAVPARDPSSTLLST*LLNLGILNGPISIL Trigger: AAGGATGGAGATGGGGCCATTTAGAATGCCCAGATTCAAGAGGCAAGTAGAAAGGAGAGTTGACGAAGGGTCCCGAGCAGGGACAGCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000423504.2 ENST00000453179.1 ENST00000665572.1 |
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| CDS TCA 90 bp | GCTGTAGGTCTGAGGTCTTGGGGGATTCTAACAGAAAGTGTGTTCTaGCAGCAGTGGGTAAAAATCCACGAGTCAGACTGGGCTGCTCCT | + |
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Preference number: 5 (lower is better) Translates to: AVGLRSWGILTESVF*QQWVKIHESDWAAP Trigger: AGGAGCAGCCCAGTCTGACTCGTGGATTTTTACCCACTGCTGTCAGAACACACTTTCTGTTAGAATCCCCCAAGACCTCAGACCTACAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000665572.1 ENST00000668439.1 |
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| CDS GCA 90 bp | TGTGTTCTGACAGCAGTGGGTAAAAATCCACGAGTCAGACTGGGCTaGTCCTCTCCTAAGCCACAGCAGCAACGTCTGAACAACGTCTTT | + |
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Preference number: 5 (lower is better) Translates to: CVLTAVGKNPRVRLG*SSPKPQQQRLNNVF Trigger: AAAGACGTTGTTCAGACGTTGCTGCTGTGGCTTAGGAGAGGAGCAGCCCAGTCTGACTCGTGGATTTTTACCCACTGCTGTCAGAACACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000665572.1 |
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| CDS GCA 72 bp | TCTCCAAGTTCCACCAGCTGCTTTTCCAGCTGTCCCTaGTCGGGACCCTTCGTCAACTCTCCTTTCTACTTG | + |
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Preference number: 6 (lower is better) Translates to: SPSSTSCFSSCP*SGPFVNSPFYL Trigger: CAAGTAGAAAGGAGAGTTGACGAAGGGTCCCGAGCAGGGACAGCTGGAAAAGCAGCTGGTGGAACTTGGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000453179.1 |
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| CDS GCA 72 bp | ACAGCAGTGGGTAAAAATCCACGAGTCAGACTGGGCTaGTCCTCTCCTAAGCCACAGCAGCAACGTCTGAAC | + |
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Preference number: 6 (lower is better) Translates to: TAVGKNPRVRLG*SSPKPQQQRLN Trigger: GTTCAGACGTTGCTGCTGTGGCTTAGGAGAGGAGCAGCCCAGTCTGACTCGTGGATTTTTACCCACTGCTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000665572.1 |
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| CDS CAA 90 bp | GTCCCTGCTCGGGACCCTTCGTCAACTCTCCTTTCTACTTGCCTCTaGAATCTGGGCATTCTAAATGGCCCCATCTCCATCCTTAGTCTC | + |
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Preference number: 6 (lower is better) Translates to: VPARDPSSTLLSTCL*NLGILNGPISILSL Trigger: GAGACTAAGGATGGAGATGGGGCCATTTAGAATGCCCAGATTCAAGAGGCAAGTAGAAAGGAGAGTTGACGAAGGGTCCCGAGCAGGGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000423504.2 ENST00000453179.1 ENST00000665572.1 |
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| CDS GCA 72 bp | GAAAAATGGACTCAACGCTTTTTGGTGCCAAGGACGTaGGACTCGGCGGCAAACGTTTCGATGAAGACAGTG | + |
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Preference number: 6 (lower is better) Translates to: EKWTQRFLVPRT*DSAANVSMKTV Trigger: CACTGTCTTCATCGAAACGTTTGCCGCCGAGTCGCACGTCCTTGGCACCAAAAAGCGTTGAGTCCATTTTTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000665572.1 ENST00000668439.1 |
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| CDS TCA 72 bp | CTGAGGTCTTGGGGGATTCTAACAGAAAGTGTGTTCTaGCAGCAGTGGGTAAAAATCCACGAGTCAGACTGG | + |
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Preference number: 6 (lower is better) Translates to: LRSWGILTESVF*QQWVKIHESDW Trigger: CCAGTCTGACTCGTGGATTTTTACCCACTGCTGTCAGAACACACTTTCTGTTAGAATCCCCCAAGACCTCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000665572.1 ENST00000668439.1 |
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| CDS GCA 72 bp | ATTAGAGCTTTGAAAAATGGACTCAACGCTTTTTGGTaGCAAGGACGTGCGACTCGGCGGCAAACGTTTCGA | + |
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Preference number: 6 (lower is better) Translates to: IRALKNGLNAFW*QGRATRRQTFR Trigger: TCGAAACGTTTGCCGCCGAGTCGCACGTCCTTGGCACCAAAAAGCGTTGAGTCCATTTTTCAAAGCTCTAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000665572.1 ENST00000668439.1 |
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| CDS CCA 72 bp | CACATTAGAGCTTTGAAAAATGGACTCAACGCTTTTTaGTGCCAAGGACGTGCGACTCGGCGGCAAACGTTT | + |
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Preference number: 6 (lower is better) Translates to: HIRALKNGLNAF*CQGRATRRQTF Trigger: AAACGTTTGCCGCCGAGTCGCACGTCCTTGGCACCAAAAAGCGTTGAGTCCATTTTTCAAAGCTCTAATGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000665572.1 ENST00000668439.1 |
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