RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC02827 (Homo sapiens)

Ensembl gene IDs: ENSG00000236908

Ensembl transcript IDs: ENST00000432994.2, ENST00000543036.1

Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp TTCCATCATGGAGGCAGCGAGACTGAGCAAGCAGGCCCTGGGCTCTaGGTCCTGGTCCTGGCCCTGCCCCTAACTCGGGCCATTTACCTC +
Preference number: 5 (lower is better)
Translates to: FHHGGSETEQAGPGL*VLVLALPLTRAIYL
Trigger: GAGGTAAATGGCCCGAGTTAGGGGCAGGGCCAGGACCAGGACTCAGAGCCCAGGGCCTGCTTGCTCAGTCTCGCTGCCTCCATGATGGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000432994.2
CDS CCA 90 bp TCCCTCCTCCTGTGGTCCCAGGGAGCTCCAACTTGTCCAGCACAGTaGCCCTTCCATCATGGAGGCAGCGAGACTGAGCAAGCAGGCCCT +
Preference number: 5 (lower is better)
Translates to: SLLLWSQGAPTCPAQ*PFHHGGSETEQAGP
Trigger: AGGGCCTGCTTGCTCAGTCTCGCTGCCTCCATGATGGAAGGGCCACTGTGCTGGACAAGTTGGAGCTCCCTGGGACCACAGGAGGAGGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000432994.2
CDS CCA 90 bp GCACACCTGCACATGCACACACCTGCACGTGCATGCATGCACACTTaGCCACCAGTTCAGGACTGCAAGGACAGGCATCTCTGCCAGGGG +
Preference number: 5 (lower is better)
Translates to: AHLHMHTPARACMHT*PPVQDCKDRHLCQG
Trigger: CCCCTGGCAGAGATGCCTGTCCTTGCAGTCCTGAACTGGTGGCCAAGTGTGCATGCATGCACGTGCAGGTGTGTGCATGTGCAGGTGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000432994.2
CDS GCA 90 bp GCGCACATACACGCATGCACACCTGCACATGCACACACCTGCACGTaGATGCATGCACACTTGGCCACCAGTTCAGGACTGCAAGGACAG +
Preference number: 5 (lower is better)
Translates to: AHIHACTPAHAHTCT*MHAHLATSSGLQGQ
Trigger: CTGTCCTTGCAGTCCTGAACTGGTGGCCAAGTGTGCATGCATGCACGTGCAGGTGTGTGCATGTGCAGGTGTGCATGCGTGTATGTGCGC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000432994.2
CDS GCA 90 bp ACACGCATGCACACCTGCACATGCACACACCTGCACGTGCATGCATaGACACTTGGCCACCAGTTCAGGACTGCAAGGACAGGCATCTCT +
Preference number: 5 (lower is better)
Translates to: TRMHTCTCTHLHVHA*TLGHQFRTARTGIS
Trigger: AGAGATGCCTGTCCTTGCAGTCCTGAACTGGTGGCCAAGTGTGCATGCATGCACGTGCAGGTGTGTGCATGTGCAGGTGTGCATGCGTGT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000432994.2
CDS GCA 90 bp GTGTGTGCGCACATACACGCATGCACACCTGCACATGCACACACCTaGACGTGCATGCATGCACACTTGGCCACCAGTTCAGGACTGCAA +
Preference number: 5 (lower is better)
Translates to: VCAHIHACTPAHAHT*TCMHAHLATSSGLQ
Trigger: TTGCAGTCCTGAACTGGTGGCCAAGTGTGCATGCATGCACGTGCAGGTGTGTGCATGTGCAGGTGTGCATGCGTGTATGTGCGCACACAC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000432994.2
CDS GCA 90 bp ACATACACGCATGCACACCTGCACATGCACACACCTGCACGTGCATaGATGCACACTTGGCCACCAGTTCAGGACTGCAAGGACAGGCAT +
Preference number: 5 (lower is better)
Translates to: TYTHAHLHMHTPARA*MHTWPPVQDCKDRH
Trigger: ATGCCTGTCCTTGCAGTCCTGAACTGGTGGCCAAGTGTGCATGCATGCACGTGCAGGTGTGTGCATGTGCAGGTGTGCATGCGTGTATGT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000432994.2
CDS GCA 90 bp ATGTACAAGCATGAATGTGTGTGCGCACATACACGCATGCACACCTaGACATGCACACACCTGCACGTGCATGCATGCACACTTGGCCAC +
Preference number: 5 (lower is better)
Translates to: MYKHECVCAHTRMHT*TCTHLHVHACTLGH
Trigger: GTGGCCAAGTGTGCATGCATGCACGTGCAGGTGTGTGCATGTGCAGGTGTGCATGCGTGTATGTGCGCACACACATTCATGCTTGTACAT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000432994.2
CDS CCA 90 bp CCGGCTTCCTGGGCAACAGCACCATCTCCTGGGTTAGAGCATATTTaGTTCGGAAGGGAACTTGAAGGTCACAAGGTCCAATCCTCCATC +
Preference number: 5 (lower is better)
Translates to: PASWATAPSPGLEHI*FGRELEGHKVQSSI
Trigger: GATGGAGGATTGGACCTTGTGACCTTCAAGTTCCCTTCCGAACCAAATATGCTCTAACCCAGGAGATGGTGCTGTTGCCCAGGAAGCCGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000432994.2
ENST00000543036.1
CDS TCA 90 bp CAGAAGTCAGACCCAGATTCAAAATCTGCAGCTCGCTTACATGTGTaGCCTTGGACAAGCCTGCAAACCTCTCTCAGCCTCCGTTTCCTC +
Preference number: 5 (lower is better)
Translates to: QKSDPDSKSAARLHV*PWTSLQTSLSLRFL
Trigger: GAGGAAACGGAGGCTGAGAGAGGTTTGCAGGCTTGTCCAAGGTCACACATGTAAGCGAGCTGCAGATTTTGAATCTGGGTCTGACTTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000432994.2
CDS GCA 90 bp ACACAAACATGTACAAGCATGAATGTGTGTGCGCACATACACGCATaGACACCTGCACATGCACACACCTGCACGTGCATGCATGCACAC +
Preference number: 5 (lower is better)
Translates to: TQTCTSMNVCAHIHA*TPAHAHTCTCMHAH
Trigger: GTGTGCATGCATGCACGTGCAGGTGTGTGCATGTGCAGGTGTGCATGCGTGTATGTGCGCACACACATTCATGCTTGTACATGTTTGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000432994.2
CDS TCA 90 bp GAGGCCTGGATTTGCCCTCAAATAACTGGGTTTGCACCTCAATTCTaGCCCTCTGATGGTGTCATCTTGGGCACATTCTTATTCTCTCCA +
Preference number: 5 (lower is better)
Translates to: EAWICPQITGFAPQF*PSDGVILGTFLFSP
Trigger: TGGAGAGAATAAGAATGTGCCCAAGATGACACCATCAGAGGGTCAGAATTGAGGTGCAAACCCAGTTATTTGAGGGCAAATCCAGGCCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000432994.2
CDS GCA 90 bp AAGTCATTTCTCCCCGCCTCATATGCAGTAGGAACCATAGTAAGATaGACAGAATCAGAAGTCAGACCCAGATTCAAAATCTGCAGCTCG +
Preference number: 5 (lower is better)
Translates to: KSFLPASYAVGTIVR*TESEVRPRFKICSS
Trigger: CGAGCTGCAGATTTTGAATCTGGGTCTGACTTCTGATTCTGTGCATCTTACTATGGTTCCTACTGCATATGAGGCGGGGAGAAATGACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000432994.2
CDS CAA 72 bp CTCCTCCCTCCTCCTGTGGTCCCAGGGAGCTCCAACTaGTCCAGCACAGTGGCCCTTCCATCATGGAGGCAG +
Preference number: 6 (lower is better)
Translates to: LLPPPVVPGSSN*SSTVALPSWRQ
Trigger: CTGCCTCCATGATGGAAGGGCCACTGTGCTGGACAAGTTGGAGCTCCCTGGGACCACAGGAGGAGGGAGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000432994.2
CDS CAA 90 bp TGCACACCTGCACATGCACACACCTGCACGTGCATGCATGCACACTaGGCCACCAGTTCAGGACTGCAAGGACAGGCATCTCTGCCAGGG +
Preference number: 6 (lower is better)
Translates to: CTPAHAHTCTCMHAH*ATSSGLQGQASLPG
Trigger: CCCTGGCAGAGATGCCTGTCCTTGCAGTCCTGAACTGGTGGCCAAGTGTGCATGCATGCACGTGCAGGTGTGTGCATGTGCAGGTGTGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000432994.2
CDS TCA 72 bp AATCAGCAGTGTCCCGTCCCTGCCCCCTCTCAGGACTaGAAGGGAGTCAGACAGCAAAGAAGGCTCTCCTCC +
Preference number: 6 (lower is better)
Translates to: NQQCPVPAPSQD*KGVRQQRRLSS
Trigger: GGAGGAGAGCCTTCTTTGCTGTCTGACTCCCTTTCAGTCCTGAGAGGGGGCAGGGACGGGACACTGCTGATT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000432994.2
CDS GCA 72 bp CACGCATGCACACCTGCACATGCACACACCTGCACGTaGATGCATGCACACTTGGCCACCAGTTCAGGACTG +
Preference number: 6 (lower is better)
Translates to: HACTPAHAHTCT*MHAHLATSSGL
Trigger: CAGTCCTGAACTGGTGGCCAAGTGTGCATGCATGCACGTGCAGGTGTGTGCATGTGCAGGTGTGCATGCGTG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000432994.2
CDS CAA 72 bp CTGGGAAAACACTCCAAACAGCCCCCATCTGGCACCTaGAGGACACTTGCACCCACCCACTATGCTCTGCTG +
Preference number: 6 (lower is better)
Translates to: LGKHSKQPPSGT*RTLAPTHYALL
Trigger: CAGCAGAGCATAGTGGGTGGGTGCAAGTGTCCTCAAGGTGCCAGATGGGGGCTGTTTGGAGTGTTTTCCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000432994.2
CDS GCA 72 bp CTCCAAACAGCCCCCATCTGGCACCTTGAGGACACTTaGACCCACCCACTATGCTCTGCTGAGGATAACAGT +
Preference number: 6 (lower is better)
Translates to: LQTAPIWHLEDT*THPLCSAEDNS
Trigger: ACTGTTATCCTCAGCAGAGCATAGTGGGTGGGTGCAAGTGTCCTCAAGGTGCCAGATGGGGGCTGTTTGGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000432994.2
CDS GCA 72 bp AGGAGGCCTAAATTGAATAAGACAATGCACGAGAAGTaGCTGGTACCCAGCGGGCACTCAAGGAATGGCAGC +
Preference number: 6 (lower is better)
Translates to: RRPKLNKTMHEK*LVPSGHSRNGS
Trigger: GCTGCCATTCCTTGAGTGCCCGCTGGGTACCAGGCACTTCTCGTGCATTGTCTTATTCAATTTAGGCCTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000432994.2
CDS CAA 72 bp GCCTACTCTGGGGGATCCAAGGACAGAGGCCTGGATTaGCCCTCAAATAACTGGGTTTGCACCTCAATTCTG +
Preference number: 6 (lower is better)
Translates to: AYSGGSKDRGLD*PSNNWVCTSIL
Trigger: CAGAATTGAGGTGCAAACCCAGTTATTTGAGGGCAAATCCAGGCCTCTGTCCTTGGATCCCCCAGAGTAGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000432994.2
CDS CCA 72 bp TGGGCAACAGCACCATCTCCTGGGTTAGAGCATATTTaGTTCGGAAGGGAACTTGAAGGTCACAAGGTCCAA +
Preference number: 6 (lower is better)
Translates to: WATAPSPGLEHI*FGRELEGHKVQ
Trigger: TTGGACCTTGTGACCTTCAAGTTCCCTTCCGAACCAAATATGCTCTAACCCAGGAGATGGTGCTGTTGCCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000432994.2
ENST00000543036.1
CDS TCA 72 bp CCACACTGTTCTCACAGGCTCTTAGGAGGCCTAAATTaGATAAGACAATGCACGAGAAGTGCCTGGTACCCA +
Preference number: 6 (lower is better)
Translates to: PHCSHRLLGGLN*IRQCTRSAWYP
Trigger: TGGGTACCAGGCACTTCTCGTGCATTGTCTTATTCAATTTAGGCCTCCTAAGAGCCTGTGAGAACAGTGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000432994.2
CDS CAA 72 bp AGATTCAAAATCTGCAGCTCGCTTACATGTGTGACCTaGGACAAGCCTGCAAACCTCTCTCAGCCTCCGTTT +
Preference number: 6 (lower is better)
Translates to: RFKICSSLTCVT*DKPANLSQPPF
Trigger: AAACGGAGGCTGAGAGAGGTTTGCAGGCTTGTCCAAGGTCACACATGTAAGCGAGCTGCAGATTTTGAATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000432994.2
CDS TCA 72 bp TCCTGGGTTAGAGCATATTTGGTTCGGAAGGGAACTTaGAGGTCACAAGGTCCAATCCTCCATCCAAAGGTT +
Preference number: 6 (lower is better)
Translates to: SWVRAYLVRKGT*RSQGPILHPKV
Trigger: AACCTTTGGATGGAGGATTGGACCTTGTGACCTTCAAGTTCCCTTCCGAACCAAATATGCTCTAACCCAGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000432994.2
ENST00000543036.1
CDS GCA 72 bp TGCACAGAATCAGAAGTCAGACCCAGATTCAAAATCTaGAGCTCGCTTACATGTGTGACCTTGGACAAGCCT +
Preference number: 6 (lower is better)
Translates to: CTESEVRPRFKI*SSLTCVTLDKP
Trigger: AGGCTTGTCCAAGGTCACACATGTAAGCGAGCTGCAGATTTTGAATCTGGGTCTGACTTCTGATTCTGTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000432994.2
CDS GCA 72 bp CTCCCCGCCTCATATGCAGTAGGAACCATAGTAAGATaGACAGAATCAGAAGTCAGACCCAGATTCAAAATC +
Preference number: 6 (lower is better)
Translates to: LPASYAVGTIVR*TESEVRPRFKI
Trigger: GATTTTGAATCTGGGTCTGACTTCTGATTCTGTGCATCTTACTATGGTTCCTACTGCATATGAGGCGGGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000432994.2
CDS TCA 72 bp TCAAATAACTGGGTTTGCACCTCAATTCTGACCCTCTaGTGGTGTCATCTTGGGCACATTCTTATTCTCTCC +
Preference number: 6 (lower is better)
Translates to: SNNWVCTSILTL*WCHLGHILILS
Trigger: GGAGAGAATAAGAATGTGCCCAAGATGACACCATCAGAGGGTCAGAATTGAGGTGCAAACCCAGTTATTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000432994.2
CDS TCA 72 bp ATTTGCCCTCAAATAACTGGGTTTGCACCTCAATTCTaGCCCTCTGATGGTGTCATCTTGGGCACATTCTTA +
Preference number: 6 (lower is better)
Translates to: ICPQITGFAPQF*PSDGVILGTFL
Trigger: TAAGAATGTGCCCAAGATGACACCATCAGAGGGTCAGAATTGAGGTGCAAACCCAGTTATTTGAGGGCAAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000432994.2
CDS CCA 72 bp TTGCACCTCAATTCTGACCCTCTGATGGTGTCATCTTaGGCACATTCTTATTCTCTCCAAGCCTCAATTTTC +
Preference number: 6 (lower is better)
Translates to: LHLNSDPLMVSS*AHSYSLQASIF
Trigger: GAAAATTGAGGCTTGGAGAGAATAAGAATGTGCCCAAGATGACACCATCAGAGGGTCAGAATTGAGGTGCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000432994.2