Pregenerated sensors for LINC02821 (Homo sapiens)
Ensembl gene IDs: ENSG00000257139Ensembl transcript IDs: ENST00000552324.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGCAGAGGCGCTCCTCACATCCCAGACAGGGCGGCGGGGCAGAGGTaGTCCCCACATCTCAGACGATGGGCGGCCGGGCAGAGACGCTCC | + |
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Preference number: 5 (lower is better) Translates to: SRGAPHIPDRAAGQR*SPHLRRWAAGQRRS Trigger: GGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000552324.1 |
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| CDS GCA 90 bp | GTGGTTGCCGGACGGAGGGGCTCCTCACTTCTCAGACGGGGCGGTTaGCAGGCAGAGGGTTTCCTCACTTCTCAGACGGAGCGGCCGGGC | + |
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Preference number: 5 (lower is better) Translates to: VVAGRRGSSLLRRGG*QAEGFLTSQTERPG Trigger: GCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCAC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000552324.1 |
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| CDS TCA 90 bp | AAGCCAGGGAAGCTGGTAGCATCGTTCAGTCCAAGTCCAAAGTCCTaGGAACTTCAGGCAGTAAGGGGATGCTGGATTAAGTCCCAGTGT | + |
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Preference number: 5 (lower is better) Translates to: KPGKLVASFSPSPKS*ELQAVRGCWIKSQC Trigger: ACACTGGGACTTAATCCAGCATCCCCTTACTGCCTGAAGTTCTCAGGACTTTGGACTTGGACTGAACGATGCTACCAGCTTCCCTGGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000552324.1 |
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| CDS TCA 90 bp | GCTCCTCACTTCCTGTGTTCGCAGCTATTAAGCCTGTATTCCTCTTaGAGTGTCATTTGTCAGTGGCCAGTGATTTTTGTGGTTCTTGGT | + |
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Preference number: 5 (lower is better) Translates to: APHFLCSQLLSLYSS*SVICQWPVIFVVLG Trigger: ACCAAGAACCACAAAAATCACTGGCCACTGACAAATGACACTTCAAGAGGAATACAGGCTTAATAGCTGCGAACACAGGAAGTGAGGAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000552324.1 |
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| CDS CAA 90 bp | GGTGGTTGCCGGACGGAGGGGCTCCTCACTTCTCAGACGGGGCGGTaGCCAGGCAGAGGGTTTCCTCACTTCTCAGACGGAGCGGCCGGG | + |
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Preference number: 6 (lower is better) Translates to: GGCRTEGLLTSQTGR*PGRGFPHFSDGAAG Trigger: CCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCACC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000552324.1 |
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| CDS GCA 72 bp | GGACGGAGGGGCTCCTCACTTCTCAGACGGGGCGGTTaGCAGGCAGAGGGTTTCCTCACTTCTCAGACGGAG | + |
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Preference number: 6 (lower is better) Translates to: GRRGSSLLRRGG*QAEGFLTSQTE Trigger: CTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000552324.1 |
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| CDS CAA 72 bp | CGGACGGAGGGGCTCCTCACTTCTCAGACGGGGCGGTaGCCAGGCAGAGGGTTTCCTCACTTCTCAGACGGA | + |
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Preference number: 6 (lower is better) Translates to: RTEGLLTSQTGR*PGRGFPHFSDG Trigger: TCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000552324.1 |
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| CDS TCA 72 bp | AAGCTGGTAGCATCGTTCAGTCCAAGTCCAAAGTCCTaGGAACTTCAGGCAGTAAGGGGATGCTGGATTAAG | + |
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Preference number: 6 (lower is better) Translates to: KLVASFSPSPKS*ELQAVRGCWIK Trigger: CTTAATCCAGCATCCCCTTACTGCCTGAAGTTCTCAGGACTTTGGACTTGGACTGAACGATGCTACCAGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000552324.1 |
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| CDS CAA 90 bp | CGCTCCTCACTTCCTGTGTTCGCAGCTATTAAGCCTGTATTCCTCTaGAAGTGTCATTTGTCAGTGGCCAGTGATTTTTGTGGTTCTTGG | + |
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Preference number: 6 (lower is better) Translates to: RSSLPVFAAIKPVFL*KCHLSVASDFCGSW Trigger: CCAAGAACCACAAAAATCACTGGCCACTGACAAATGACACTTCAAGAGGAATACAGGCTTAATAGCTGCGAACACAGGAAGTGAGGAGCG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000552324.1 |
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| CDS CAA 72 bp | GCAGCTATTAAGCCTGTATTCCTCTTGAAGTGTCATTaGTCAGTGGCCAGTGATTTTTGTGGTTCTTGGTTG | + |
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Preference number: 6 (lower is better) Translates to: AAIKPVFLLKCH*SVASDFCGSWL Trigger: CAACCAAGAACCACAAAAATCACTGGCCACTGACAAATGACACTTCAAGAGGAATACAGGCTTAATAGCTGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000552324.1 |
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