Pregenerated sensors for LINC02820 (Homo sapiens)

Ensembl gene IDs: ENSG00000258815

Ensembl transcript IDs: ENST00000555596.1

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CAAGGTCTTCAAGCTTTTCTGCACCAGGTTGACAGAAGAAGAGTGTaGCTAATCACCTATGAGAAGCTTCCATGCACCAATTCTAGAAGT	+
Preference number: 5 (lower is better) Translates to: QGLQAFLHQVDRRRV*LITYEKLPCTNSRS Trigger: ACTTCTAGAATTGGTGCATGGAAGCTTCTCATAGGTGATTAGCCACACTCTTCTTCTGTCAACCTGGTGCAGAAAAGCTTGAAGACCTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555596.1
CDS TCA 90 bp	TCCCCTCCAGACAGAGCAGACTGTAAAAGCAAAGTCACAGAGGTCTaGTCCTGTATGGCATGTGTATTAGTTAAAGTCATGCTAACAGTT	+
Preference number: 5 (lower is better) Translates to: SPPDRADCKSKVTEV*SCMACVLVKVMLTV Trigger: AACTGTTAGCATGACTTTAACTAATACACATGCCATACAGGATCAGACCTCTGTGACTTTGCTTTTACAGTCTGCTCTGTCTGGAGGGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555596.1
CDS TCA 72 bp	TTGTCTTCAATTCCATTTCCCATAAGTTTTGATAGCTaGTGCCTGGCTCGGAGGGTCCTACGCCCACGGAGT	+
Preference number: 6 (lower is better) Translates to: LSSIPFPISFDS*CLARRVLRPRS Trigger: ACTCCGTGGGCGTAGGACCCTCCGAGCCAGGCATCAGCTATCAAAACTTATGGGAAATGGAATTGAAGACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555596.1
CDS CCA 72 bp	CAAGCTTTTCTGCACCAGGTTGACAGAAGAAGAGTGTaGCTAATCACCTATGAGAAGCTTCCATGCACCAAT	+
Preference number: 6 (lower is better) Translates to: QAFLHQVDRRRV*LITYEKLPCTN Trigger: ATTGGTGCATGGAAGCTTCTCATAGGTGATTAGCCACACTCTTCTTCTGTCAACCTGGTGCAGAAAAGCTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555596.1
CDS CAA 90 bp	GTCAAAATGAGTGCTCTTGATTTCAAGGAGTCTCTTCTTAGAGTGTaGATTCAGGAACCCAGGGTCCTTCATTCTTGTATCTCCTCCATC	+
Preference number: 6 (lower is better) Translates to: VKMSALDFKESLLRV*IQEPRVLHSCISSI Trigger: GATGGAGGAGATACAAGAATGAAGGACCCTGGGTTCCTGAATCAACACTCTAAGAAGAGACTCCTTGAAATCAAGAGCACTCATTTTGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555596.1
CDS TCA 72 bp	GTGCTCTTGATTTCAAGGAGTCTCTTCTTAGAGTGTTaGTTCAGGAACCCAGGGTCCTTCATTCTTGTATCT	+
Preference number: 6 (lower is better) Translates to: VLLISRSLFLEC*FRNPGSFILVS Trigger: AGATACAAGAATGAAGGACCCTGGGTTCCTGAATCAACACTCTAAGAAGAGACTCCTTGAAATCAAGAGCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555596.1
CDS CAA 72 bp	AGTGCTCTTGATTTCAAGGAGTCTCTTCTTAGAGTGTaGATTCAGGAACCCAGGGTCCTTCATTCTTGTATC	+
Preference number: 6 (lower is better) Translates to: SALDFKESLLRV*IQEPRVLHSCI Trigger: GATACAAGAATGAAGGACCCTGGGTTCCTGAATCAACACTCTAAGAAGAGACTCCTTGAAATCAAGAGCACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555596.1
CDS TCA 72 bp	GTCCTTCATTCTTGTATCTCCTCCATCATCAATATGTaGTTTCCAAGGTCTTCAAGCTTTTCTGCACCAGGT	+
Preference number: 6 (lower is better) Translates to: VLHSCISSIINM*FPRSSSFSAPG Trigger: ACCTGGTGCAGAAAAGCTTGAAGACCTTGGAAATCACATATTGATGATGGAGGAGATACAAGAATGAAGGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555596.1
CDS TCA 72 bp	GACAGAGCAGACTGTAAAAGCAAAGTCACAGAGGTCTaGTCCTGTATGGCATGTGTATTAGTTAAAGTCATG	+
Preference number: 6 (lower is better) Translates to: DRADCKSKVTEV*SCMACVLVKVM Trigger: CATGACTTTAACTAATACACATGCCATACAGGATCAGACCTCTGTGACTTTGCTTTTACAGTCTGCTCTGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555596.1

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