Pregenerated sensors for LINC02818 (Homo sapiens)
Ensembl gene IDs: ENSG00000231966Ensembl transcript IDs: ENST00000442108.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | ACAACTTTGACCCCTGAGATCCGTTACTCTAATGGTGAACCGACGTaGTCCTACGCTGAAGTGTGCAGTAAGCCCAATCCGTGCCTGGAT | + |
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Preference number: 5 (lower is better) Translates to: TTLTPEIRYSNGEPT*SYAEVCSKPNPCLD Trigger: ATCCAGGCACGGATTGGGCTTACTGCACACTTCAGCGTAGGAGCACGTCGGTTCACCATTAGAGTAACGGATCTCAGGGGTCAAAGTTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000442108.1 |
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| CDS GCA 90 bp | TTTTCAGAAATCCAACTCATCTACAACTTTCAGGAGTCTCCGTGTTaGATGAAGTTATGTAGAAAGGGGCCGGAAACGATCATTCTCTTG | + |
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Preference number: 5 (lower is better) Translates to: FSEIQLIYNFQESPC*MKLCRKGPETIILL Trigger: CAAGAGAATGATCGTTTCCGGCCCCTTTCTACATAACTTCATGCAACACGGAGACTCCTGAAAGTTGTAGATGAGTTGGATTTCTGAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000442108.1 |
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| CDS TCA 90 bp | ATTATTGTTATGTGTTTGGAGTTTCAGAGATGTGCCAACTCCAGGTaGAAGCTTCAAACGGCATCTCATGTAATATTGTGTCTGCAATTG | + |
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Preference number: 5 (lower is better) Translates to: IIVMCLEFQRCANSR*KLQTASHVILCLQL Trigger: CAATTGCAGACACAATATTACATGAGATGCCGTTTGAAGCTTTCACCTGGAGTTGGCACATCTCTGAAACTCCAAACACATAACAATAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000442108.1 |
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| CDS GCA 72 bp | ACCCCTGAGATCCGTTACTCTAATGGTGAACCGACGTaGTCCTACGCTGAAGTGTGCAGTAAGCCCAATCCG | + |
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Preference number: 6 (lower is better) Translates to: TPEIRYSNGEPT*SYAEVCSKPNP Trigger: CGGATTGGGCTTACTGCACACTTCAGCGTAGGAGCACGTCGGTTCACCATTAGAGTAACGGATCTCAGGGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000442108.1 |
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| CDS CAA 90 bp | CTCTTGGTGAGCCCAGTGGTTTCCTCTACGATTGAGTCCACAACTTaGACCCCTGAGATCCGTTACTCTAATGGTGAACCGACGTGCTCC | + |
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Preference number: 6 (lower is better) Translates to: LLVSPVVSSTIESTT*TPEIRYSNGEPTCS Trigger: GGAGCACGTCGGTTCACCATTAGAGTAACGGATCTCAGGGGTCAAAGTTGTGGACTCAATCGTAGAGGAAACCACTGGGCTCACCAAGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000442108.1 |
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| CDS TCA 72 bp | GCCCAGTGGTTTCCTCTACGATTGAGTCCACAACTTTaGCCCCTGAGATCCGTTACTCTAATGGTGAACCGA | + |
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Preference number: 6 (lower is better) Translates to: AQWFPLRLSPQL*PLRSVTLMVNR Trigger: TCGGTTCACCATTAGAGTAACGGATCTCAGGGGTCAAAGTTGTGGACTCAATCGTAGAGGAAACCACTGGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000442108.1 |
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| CDS CAA 72 bp | AGCCCAGTGGTTTCCTCTACGATTGAGTCCACAACTTaGACCCCTGAGATCCGTTACTCTAATGGTGAACCG | + |
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Preference number: 6 (lower is better) Translates to: SPVVSSTIESTT*TPEIRYSNGEP Trigger: CGGTTCACCATTAGAGTAACGGATCTCAGGGGTCAAAGTTGTGGACTCAATCGTAGAGGAAACCACTGGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000442108.1 |
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| CDS GCA 72 bp | TCTAATGGTGAACCGACGTGCTCCTACGCTGAAGTGTaGAGTAAGCCCAATCCGTGCCTGGATTTTGAAAAA | + |
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Preference number: 6 (lower is better) Translates to: SNGEPTCSYAEV*SKPNPCLDFEK Trigger: TTTTTCAAAATCCAGGCACGGATTGGGCTTACTGCACACTTCAGCGTAGGAGCACGTCGGTTCACCATTAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000442108.1 |
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| CDS CAA 72 bp | AAGTTATGTAGAAAGGGGCCGGAAACGATCATTCTCTaGGTGAGCCCAGTGGTTTCCTCTACGATTGAGTCC | + |
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Preference number: 6 (lower is better) Translates to: KLCRKGPETIIL*VSPVVSSTIES Trigger: GGACTCAATCGTAGAGGAAACCACTGGGCTCACCAAGAGAATGATCGTTTCCGGCCCCTTTCTACATAACTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000442108.1 |
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| CDS CAA 90 bp | TGTTGCATGAAGTTATGTAGAAAGGGGCCGGAAACGATCATTCTCTaGGTGAGCCCAGTGGTTTCCTCTACGATTGAGTCCACAACTTTG | + |
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Preference number: 6 (lower is better) Translates to: CCMKLCRKGPETIIL*VSPVVSSTIESTTL Trigger: CAAAGTTGTGGACTCAATCGTAGAGGAAACCACTGGGCTCACCAAGAGAATGATCGTTTCCGGCCCCTTTCTACATAACTTCATGCAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000442108.1 |
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| CDS TCA 72 bp | AACTCATCTACAACTTTCAGGAGTCTCCGTGTTGCATaGAGTTATGTAGAAAGGGGCCGGAAACGATCATTC | + |
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Preference number: 6 (lower is better) Translates to: NSSTTFRSLRVA*SYVERGRKRSF Trigger: GAATGATCGTTTCCGGCCCCTTTCTACATAACTTCATGCAACACGGAGACTCCTGAAAGTTGTAGATGAGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000442108.1 |
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