Pregenerated sensors for LINC02816 (Homo sapiens)
Ensembl gene IDs: ENSG00000225857Ensembl transcript IDs: ENST00000422858.1, ENST00000434447.5
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TGTTTCCTTCCAGGATTCCCAGGTGATGTTGAGGCCCGGTCAGTCTaGTTCACTCCACACACACACATCCTGCTGTGGACTGAACTGTGG | + |
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Preference number: 5 (lower is better) Translates to: CFLPGFPGDVEARSV*FTPHTHILLWTELW Trigger: CCACAGTTCAGTCCACAGCAGGATGTGTGTGTGTGGAGTGAAGCAGACTGACCGGGCCTCAACATCACCTGGGAATCCTGGAAGGAAACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422858.1 |
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| CDS CCA 90 bp | GTCTGCTTCACTCCACACACACACATCCTGCTGTGGACTGAACTGTaGCCCCCTCCAAATTCTTATGTTGATGCCCTAACCCCTCCGTGG | + |
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Preference number: 5 (lower is better) Translates to: VCFTPHTHILLWTEL*PPPNSYVDALTPPW Trigger: CCACGGAGGGGTTAGGGCATCAACATAAGAATTTGGAGGGGGCCACAGTTCAGTCCACAGCAGGATGTGTGTGTGTGGAGTGAAGCAGAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000422858.1 |
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| CDS CCA 90 bp | GAAATACGGCGCCATGTGAGCTATGCAGATTCGGGTTCCTTAGGTTaGAGCAAGGCCCAGGAACCTGTTTCCTTCCAGGATTCCCAGGTG | + |
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Preference number: 5 (lower is better) Translates to: EIRRHVSYADSGSLG*SKAQEPVSFQDSQV Trigger: CACCTGGGAATCCTGGAAGGAAACAGGTTCCTGGGCCTTGCTCCAACCTAAGGAACCCGAATCTGCATAGCTCACATGGCGCCGTATTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000422858.1 ENST00000434447.5 |
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| CDS GCA 90 bp | ATGTTGAGGCCCGGTCAGTCTGCTTCACTCCACACACACACATCCTaGTGTGGACTGAACTGTGGCCCCCTCCAAATTCTTATGTTGATG | + |
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Preference number: 5 (lower is better) Translates to: MLRPGQSASLHTHTS*CGLNCGPLQILMLM Trigger: CATCAACATAAGAATTTGGAGGGGGCCACAGTTCAGTCCACAGCAGGATGTGTGTGTGTGGAGTGAAGCAGACTGACCGGGCCTCAACAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000422858.1 |
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| CDS GCA 90 bp | TTCCAATGTGCTCTGAACGTTGGAAATACGGCGCCATGTGAGCTATaGAGATTCGGGTTCCTTAGGTTGGAGCAAGGCCCAGGAACCTGT | + |
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Preference number: 5 (lower is better) Translates to: FQCALNVGNTAPCEL*RFGFLRLEQGPGTC Trigger: ACAGGTTCCTGGGCCTTGCTCCAACCTAAGGAACCCGAATCTGCATAGCTCACATGGCGCCGTATTTCCAACGTTCAGAGCACATTGGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000422858.1 ENST00000434447.5 |
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| CDS TCA 90 bp | GACTGGCAGCCCCTCGGGTGTGGTCTTGACCAACACCTTAGCCCTTaGGCTGGGCACATAACCATCTTATTTATTTCCTTATGCGTCAGA | + |
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Preference number: 5 (lower is better) Translates to: DWQPLGCGLDQHLSP*AGHITILFISLCVR Trigger: TCTGACGCATAAGGAAATAAATAAGATGGTTATGTGCCCAGCTCAAGGGCTAAGGTGTTGGTCAAGACCACACCCGAGGGGCTGCCAGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434447.5 |
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| CDS TCA 90 bp | GACGTTTCAGGTAAAGAGATGAGCATAGATGCAGGCTCGGAGGTGTaGAACTGCCTGGTTTCAGTGTTACTAAGTGTAAAATTTAACCCA | + |
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Preference number: 5 (lower is better) Translates to: DVSGKEMSIDAGSEV*NCLVSVLLSVKFNP Trigger: TGGGTTAAATTTTACACTTAGTAACACTGAAACCAGGCAGTTTCACACCTCCGAGCCTGCATCTATGCTCATCTCTTTACCTGAAACGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434447.5 |
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| CDS CCA 72 bp | CCAGGATTCCCAGGTGATGTTGAGGCCCGGTCAGTCTaGTCGGGGTCAGCCCACGCCACTCCCCCAGGCTGG | + |
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Preference number: 6 (lower is better) Translates to: PGFPGDVEARSV*SGSAHATPPGW Trigger: CCAGCCTGGGGGAGTGGCGTGGGCTGACCCCGACCAGACTGACCGGGCCTCAACATCACCTGGGAATCCTGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000434447.5 |
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| CDS CAA 90 bp | AGCAAGGCCCAGGAACCTGTTTCCTTCCAGGATTCCCAGGTGATGTaGAGGCCCGGTCAGTCTGGTCGGGGTCAGCCCACGCCACTCCCC | + |
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Preference number: 6 (lower is better) Translates to: SKAQEPVSFQDSQVM*RPGQSGRGQPTPLP Trigger: GGGGAGTGGCGTGGGCTGACCCCGACCAGACTGACCGGGCCTCAACATCACCTGGGAATCCTGGAAGGAAACAGGTTCCTGGGCCTTGCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434447.5 |
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| CDS CAA 72 bp | CAGGAACCTGTTTCCTTCCAGGATTCCCAGGTGATGTaGAGGCCCGGTCAGTCTGGTCGGGGTCAGCCCACG | + |
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Preference number: 6 (lower is better) Translates to: QEPVSFQDSQVM*RPGQSGRGQPT Trigger: CGTGGGCTGACCCCGACCAGACTGACCGGGCCTCAACATCACCTGGGAATCCTGGAAGGAAACAGGTTCCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434447.5 |
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| CDS TCA 72 bp | CGTGGGATAGTATTAGGAGGCGGGGCCTTTGGGAGGTaGTTAGGGTTAGAGGAGGTCATGACGGTGAGGCCC | + |
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Preference number: 6 (lower is better) Translates to: RGIVLGGGAFGR*LGLEEVMTVRP Trigger: GGGCCTCACCGTCATGACCTCCTCTAACCCTAATCACCTCCCAAAGGCCCCGCCTCCTAATACTATCCCACG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000422858.1 |
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| CDS GCA 72 bp | CCCGGTCAGTCTGCTTCACTCCACACACACACATCCTaGTGTGGACTGAACTGTGGCCCCCTCCAAATTCTT | + |
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Preference number: 6 (lower is better) Translates to: PGQSASLHTHTS*CGLNCGPLQIL Trigger: AAGAATTTGGAGGGGGCCACAGTTCAGTCCACAGCAGGATGTGTGTGTGTGGAGTGAAGCAGACTGACCGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000422858.1 |
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| CDS CAA 72 bp | CAGGAACCTGTTTCCTTCCAGGATTCCCAGGTGATGTaGAGGCCCGGTCAGTCTGCTTCACTCCACACACAC | + |
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Preference number: 6 (lower is better) Translates to: QEPVSFQDSQVM*RPGQSASLHTH Trigger: GTGTGTGTGGAGTGAAGCAGACTGACCGGGCCTCAACATCACCTGGGAATCCTGGAAGGAAACAGGTTCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422858.1 |
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| CDS CAA 90 bp | GGAAATACGGCGCCATGTGAGCTATGCAGATTCGGGTTCCTTAGGTaGGAGCAAGGCCCAGGAACCTGTTTCCTTCCAGGATTCCCAGGT | + |
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Preference number: 6 (lower is better) Translates to: GNTAPCELCRFGFLR*EQGPGTCFLPGFPG Trigger: ACCTGGGAATCCTGGAAGGAAACAGGTTCCTGGGCCTTGCTCCAACCTAAGGAACCCGAATCTGCATAGCTCACATGGCGCCGTATTTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000422858.1 ENST00000434447.5 |
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| CDS GCA 72 bp | GCTCTGAACGTTGGAAATACGGCGCCATGTGAGCTATaGAGATTCGGGTTCCTTAGGTTGGAGCAAGGCCCA | + |
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Preference number: 6 (lower is better) Translates to: ALNVGNTAPCEL*RFGFLRLEQGP Trigger: TGGGCCTTGCTCCAACCTAAGGAACCCGAATCTGCATAGCTCACATGGCGCCGTATTTCCAACGTTCAGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000422858.1 ENST00000434447.5 |
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| CDS CCA 72 bp | CCTCCAAATTCTTATGTTGATGCCCTAACCCCTCCGTaGGATAGTATTAGGAGGCGGGGCCTTTGGGAGGTG | + |
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Preference number: 6 (lower is better) Translates to: PPNSYVDALTPP*DSIRRRGLWEV Trigger: CACCTCCCAAAGGCCCCGCCTCCTAATACTATCCCACGGAGGGGTTAGGGCATCAACATAAGAATTTGGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000422858.1 |
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| CDS CCA 72 bp | CGCCATGTGAGCTATGCAGATTCGGGTTCCTTAGGTTaGAGCAAGGCCCAGGAACCTGTTTCCTTCCAGGAT | + |
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Preference number: 6 (lower is better) Translates to: RHVSYADSGSLG*SKAQEPVSFQD Trigger: ATCCTGGAAGGAAACAGGTTCCTGGGCCTTGCTCCAACCTAAGGAACCCGAATCTGCATAGCTCACATGGCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000422858.1 ENST00000434447.5 |
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| CDS CCA 72 bp | TCAGTCTGCTTCACTCCACACACACACATCCTGCTGTaGACTGAACTGTGGCCCCCTCCAAATTCTTATGTT | + |
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Preference number: 6 (lower is better) Translates to: SVCFTPHTHILL*TELWPPPNSYV Trigger: AACATAAGAATTTGGAGGGGGCCACAGTTCAGTCCACAGCAGGATGTGTGTGTGTGGAGTGAAGCAGACTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000422858.1 |
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| CDS TCA 72 bp | CCCCTCGGGTGTGGTCTTGACCAACACCTTAGCCCTTaGGCTGGGCACATAACCATCTTATTTATTTCCTTA | + |
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Preference number: 6 (lower is better) Translates to: PLGCGLDQHLSP*AGHITILFISL Trigger: TAAGGAAATAAATAAGATGGTTATGTGCCCAGCTCAAGGGCTAAGGTGTTGGTCAAGACCACACCCGAGGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434447.5 |
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| CDS TCA 72 bp | GGTAAAGAGATGAGCATAGATGCAGGCTCGGAGGTGTaGAACTGCCTGGTTTCAGTGTTACTAAGTGTAAAA | + |
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Preference number: 6 (lower is better) Translates to: GKEMSIDAGSEV*NCLVSVLLSVK Trigger: TTTTACACTTAGTAACACTGAAACCAGGCAGTTTCACACCTCCGAGCCTGCATCTATGCTCATCTCTTTACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000434447.5 |
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